Clone Sequence Records
BO16916.3prime Sequence
335 bp (335 high quality bases) assembled on 2006-10-13
> BO16916.3prime
ATGGTCTAGAAAGCTTGCCTTTGCCTTCAACTGGCAAAAAAGGCCAGATA
TAAAGTTCGTACACGATGTTAGAATATCGGGCACAGCCATGAGACCATCT
TTCATTTCCGAAAGAGTGACGAAACGGTATGCCATCAAAAGTGCCACAAT
AACCAATGTTGGTATGGCCAGAGATACCAGGATGCGAGCCACAACGACAA
TGGCAAAGCTGATCACTATCAGGGTCAGAAGAACGGCCAAGATGCGTCCC
ATTTCACCGGGCTTCACTTCACTTTTAGTCCACGCATCCAAACGGTCAAA
CACGTTTTCACCGAAATCCATGTCGACTGATAACT
BO16916.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12784-PA | 306 | CG12784-RA | 1..303 | 321..19 | 1515 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:42:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12784-RA | 437 | CG12784-RA | 55..357 | 321..19 | 1515 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:42:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15763169..15763471 | 321..19 | 1515 | 100 | Minus |
Blast to na_te.dros performed 2015-02-03 06:42:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
transib2 | 2844 | transib2 TRANSIB2 2844bp | 2260..2303 | 302..257 | 108 | 73.9 | Minus |
BO16916.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:59:21 Download gff for
BO16916.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12784-PA | 1..306 | 15..321 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:30:46 Download gff for
BO16916.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12784-RA | 52..364 | 11..324 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:38:47 Download gff for
BO16916.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12784-RA | 52..364 | 11..324 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:38:47 Download gff for
BO16916.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15763166..15763478 | 11..324 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:30:46 Download gff for
BO16916.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11588888..11589200 | 11..324 | 98 | | Minus |
BO16916.5prime Sequence
335 bp (335 high quality bases) assembled on 2006-10-13
> BO16916.5prime
GAAGTTATCAGTCGACATGGATTTCGGTGAAAACGTGTTTGACCGTTTGG
ATGCGTGGACTAAAAGTGAAGTGAAGCCCGGTGAAATGGGACGCATCTTG
GCCGTTCTTCTGACCCTGATAGTGATCAGCTTTGCCATTGTCGTTGTGGC
TCGCATCCTGGTATCTCTGGCCATACCAACATTGGTTATTGTGGCACTTT
TGATGGCATACCGTTTCGTCACTCTTTCGGAAATGAAAGATGGTCTCATG
GCTGTGCCCGATATTCTAACATCGTGTACGAACTTTATATCTGGCCTTTT
TTGCCAGTTGAAGGCAAAGGCAAGCTTTCTAGACC
BO16916.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12784-PA | 306 | CG12784-RA | 1..303 | 17..319 | 1515 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:15:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12784-RA | 437 | CG12784-RA | 55..357 | 17..319 | 1515 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:15:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15763169..15763471 | 17..319 | 1515 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 16:15:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
transib2 | 2844 | transib2 TRANSIB2 2844bp | 2260..2303 | 36..81 | 108 | 73.9 | Plus |
BO16916.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:59:22 Download gff for
BO16916.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12784-PA | 1..306 | 17..323 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:12:07 Download gff for
BO16916.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12784-RA | 52..364 | 14..327 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:45:19 Download gff for
BO16916.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12784-RA | 52..364 | 14..327 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:45:19 Download gff for
BO16916.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15763166..15763478 | 14..327 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:12:07 Download gff for
BO16916.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11588888..11589200 | 14..327 | 98 | | Plus |
BO16916.complete Sequence
337 bp assembled on 2006-10-11
GenBank Submission: FJ633982
> BO16916.complete
GAAGTTATCAGTCGACATGGATTTCGGTGAAAACGTGTTTGACCGTTTGG
ATGCGTGGACTAAAAGTGAAGTGAAGCCCGGTGAAATGGGACGCATCTTG
GCCGTTCTTCTGACCCTGATAGTGATCAGCTTTGCCATTGTCGTTGTGGC
TCGCATCCTGGTATCTCTGGCCATACCAACATTGGTTATTGTGGCACTTT
TGATGGCATACCGTTTCGTCACTCTTTCGGAAATGAAAGATGGTCTCATG
GCTGTGCCCGATATTCTAACATCGTGTACGAACTTTATATCTGGCCTTTT
TTGCCAGTTGAAGGCAAAGGCAAGCTTTCTAGACCAT
BO16916.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:29:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12784-RA | 306 | CG12784-PA | 1..303 | 17..319 | 1515 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:29:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12784-RA | 437 | CG12784-RA | 55..357 | 17..319 | 1515 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:29:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15763169..15763471 | 17..319 | 1515 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 16:29:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
transib2 | 2844 | transib2 TRANSIB2 2844bp | 2260..2303 | 36..81 | 108 | 73.9 | Plus |
BO16916.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:25:52 Download gff for
BO16916.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12784-RA | 1..306 | 17..323 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:46:03 Download gff for
BO16916.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12784-RA | 52..364 | 14..327 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:02:16 Download gff for
BO16916.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12784-RA | 55..357 | 17..321 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:25:52 Download gff for
BO16916.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12784-RA | 52..364 | 14..327 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:20:27 Download gff for
BO16916.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12784-RA | 55..357 | 17..321 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:20:27 Download gff for
BO16916.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15763169..15763471 | 17..321 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:02:16 Download gff for
BO16916.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11588891..11589193 | 17..321 | 99 | | Plus |
BO16916.pep Sequence
Translation from 16 to 337
> BO16916.pep
MDFGENVFDRLDAWTKSEVKPGEMGRILAVLLTLIVISFAIVVVARILVS
LAIPTLVIVALLMAYRFVTLSEMKDGLMAVPDILTSCTNFISGLFCQLKA
KASFLDH
BO16916.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:56:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12784-PA | 101 | CG12784-PA | 1..101 | 1..101 | 494 | 100 | Plus |