BO16918.complete Sequence
460 bp assembled on 2008-11-10
GenBank Submission: KX796658
> BO16918.complete
GAAGTTATCAGTCGACATGCAGTTGTTGGCTGCGATTCTAGTGCTAATCC
TGGCCAGCTTGGCCCACGGTAGACCCACTTTCGATAAGATTGCGGAGCTT
CTGTTCGGCGACCCAAATCATTATCCGCCAGCAAGGCCAGTTGATCCACA
GCTACATCCTGGACCAGGTCCACTCATCCAGGAGGGCTACGAGCAGGGCT
ACGACTATCACTATGGTGGAGGCTACGGCTACGGTGGTAGCCACCAGCAG
ACGCATCCAGGTGGCTATGCCTATTACCCACCACGACCGGTTCCGGCAGC
AAATGACTACTATCCACCACCTTGGTCAGTGCGTCCTTCGCCTGGATACT
ACTCTCAGCCGTCTCATCCTGCCAGTGTCCATTATCCGCACAAGAATCAG
GATCTTTACGGAGGTGGAGGTGGTTACAAGCAGCGGGGTTACGCAAGCTT
TCTAGACCAT
BO16918.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:31:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13641-RA | 429 | CG13641-PA | 1..426 | 17..442 | 2130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:31:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13641-RA | 542 | CG13641-RA | 27..452 | 17..442 | 2130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:31:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24864281..24864706 | 442..17 | 2130 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:31:33 has no hits.
BO16918.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:17:09 Download gff for
BO16918.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13641-RA | 75..508 | 17..452 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:01 Download gff for
BO16918.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13641-RA | 27..452 | 17..444 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:27:33 Download gff for
BO16918.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13641-RA | 75..500 | 17..444 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:23:02 Download gff for
BO16918.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13641-RA | 27..452 | 17..444 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:23:02 Download gff for
BO16918.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24864279..24864706 | 17..444 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:01 Download gff for
BO16918.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20690001..20690428 | 17..444 | 99 | | Minus |
BO16918.5prime Sequence
458 bp (458 high quality bases) assembled on 2006-10-13
> BO16918.5prime
NAANTTATCANTCNACATNCANTTNTTNNCTNCNATTCTAATGCTAATCC
TGGCCANCTTGGCCCANCATAAACCCACTTTCNATAAAATTGCNAANCTT
CTGTTCANCNACCCAAATCATTATCCNCCANCAANACCAATTAATCCACA
NCTACATCCTNAACCAANTCCACTCATCCANNAANNCTACAAACANNNCT
ACAACTATCACTATNATNAANNCTACANCTACNNTNNTANCCACCAACAA
ACNCATCCANNTANCTATNCCTATTACCCACCACNACCNNTTCCNNCANC
AAATAACTACTATCCACCACCTTNNTCANTNCNTCCTTCNCCTAAATACT
ACTCTCAACCNTCTCATCCTNCCAATNTCCATTATCCNCACAAAAATCAN
NATCTTTACNNANATNNANNTANTTACAANCANCNNNATTACNCAANCTT
TCTAAACC
BO16918.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:46:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13641-PA | 429 | CG13641-RA | 249..307 | 265..323 | 137 | 86.4 | Plus |
| CG13641-PA | 429 | CG13641-RA | 330..393 | 346..409 | 131 | 85.9 | Plus |
| CG13641-PA | 429 | CG13641-RA | 57..164 | 73..180 | 131 | 82.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:36:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13641-RA | 542 | CG13641-RA | 45..419 | 35..409 | 872 | 78.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:36:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24864314..24864688 | 409..35 | 872 | 78.4 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:36:54 has no hits.
BO16918.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed on 2007-05-11 12:59:22 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed on 2013-08-31 02:38:54 has no hits.
Sim4 to dmel-all-transcript-r6.02.fasta performed on 2015-02-12 19:52:10 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed on 2015-02-12 19:52:10 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-31 02:38:54 has no hits.
BO16918.pep Sequence
Translation from 16 to 460
> BO16918.pep
MQLLAAILVLILASLAHGRPTFDKIAELLFGDPNHYPPARPVDPQLHPGP
GPLIQEGYEQGYDYHYGGGYGYGGSHQQTHPGGYAYYPPRPVPAANDYYP
PPWSVRPSPGYYSQPSHPASVHYPHKNQDLYGGGGGYKQRGYASFLDH
BO16918.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:07:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13641-PA | 142 | CG13641-PA | 1..142 | 1..142 | 818 | 100 | Plus |
