Clone Sequence Records
BO16920.5prime Sequence
485 bp (485 high quality bases) assembled on 2006-10-13
> BO16920.5prime
GAAGTTATCAGTCGACATGGAATCACAAGACTACATATTGGCGAATGACG
ATCTTCAAGACATTTGCGAAGCCTTCGAGCTCTGTGATCCTGAGAAGACT
GGAAGAATCAGAGCAGACGATTTGGGAGAAGTGATGCGCACTCTCGGCCA
GAATCACACCGAGTCGGAAATCTACAGATATTCCGAGGGACTCGAGGGAG
ACGTCAACGGGTACATACAACTCACTGATTTCATCGATTTGATGACCAAA
ATCTACAGCGCGATGGGCAGCAGTGACTATTTGAAGGCAGCATATAATGC
CTTCGATTTTGATAAGGACGGTTTGGTAACATATGGCGAGCTACGTCACG
TTTTCATCAATCTTGGCGAAAAAATATCCGACGAAGAGTTCAATGAAGTG
TTTCGTCAGGCTGATGTTGATGGCGATGGCGTTATTAACTTCCGTGATTT
TTGTACAGCCTATAGATCCGCAAGCTTTCTAGACC
BO16920.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13898-PA | 456 | CG13898-RA | 1..453 | 17..469 | 2265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:26:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13898-RA | 625 | CG13898-RA | 79..531 | 17..469 | 2265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:26:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 803521..803973 | 469..17 | 2265 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 10:26:13 has no hits.
BO16920.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:59:25 Download gff for
BO16920.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13898-PA | 1..456 | 17..473 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:41:37 Download gff for
BO16920.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13898-RA | 69..534 | 7..473 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:26:26 Download gff for
BO16920.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13898-RA | 69..534 | 7..473 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:26:26 Download gff for
BO16920.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 803517..803983 | 7..473 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:41:37 Download gff for
BO16920.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 803517..803983 | 7..473 | 98 | | Minus |
BO16920.3prime Sequence
485 bp (485 high quality bases) assembled on 2006-10-13
> BO16920.3prime
ATGGTCTAGAAAGCTTGCGGATCTATAGGCTGTACAAAAATCACGGAAGT
TAATAACGCCATCGCCATCAACATCAGCCTGACGAAACACTTCATTGAAC
TCTTCGTCGGATATTTTTTCGCCAAGATTGATGAAAACGTGACGTAGCTC
GCCATATGTTACCAAACCGTCCTTATCAAAATCGAAGGCATTATATGCTG
CCTTCAAATAGTCACTGCTGCCCATCGCGCTGTAGATTTTGGTCATCAAA
TCGATGAAATCAGTGAGTTGTATGTACCCGTTGACGTCTCCCTCGAGTCC
CTCGGAATATCTGTAGATTTCCGACTCGGTGTGATTCTGGCCGAGAGTGC
GCATCACTTCTCCCAAATCGTCTGCTCTGATTCTTCCAGTCTTCTCAGGA
TCACAGAGCTCGAAGGCTTCGCAAATGTCTTGAAGATCGTCATTCGCCAA
TATGTAGTCTTGTGATTCCATGTCGACTGATAACT
BO16920.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13898-PA | 456 | CG13898-RA | 1..453 | 471..19 | 2265 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:16:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13898-RA | 625 | CG13898-RA | 79..531 | 471..19 | 2265 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:16:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 803521..803973 | 19..471 | 2265 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:16:35 has no hits.
BO16920.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:59:24 Download gff for
BO16920.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13898-PA | 1..456 | 15..471 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:12:15 Download gff for
BO16920.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13898-RA | 69..534 | 15..481 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:45:27 Download gff for
BO16920.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13898-RA | 69..534 | 15..481 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:45:27 Download gff for
BO16920.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 803517..803983 | 15..481 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:12:15 Download gff for
BO16920.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 803517..803983 | 15..481 | 98 | | Plus |
BO16920.complete Sequence
487 bp assembled on 2006-10-11
GenBank Submission: FJ633983
> BO16920.complete
GAAGTTATCAGTCGACATGGAATCACAAGACTACATATTGGCGAATGACG
ATCTTCAAGACATTTGCGAAGCCTTCGAGCTCTGTGATCCTGAGAAGACT
GGAAGAATCAGAGCAGACGATTTGGGAGAAGTGATGCGCACTCTCGGCCA
GAATCACACCGAGTCGGAAATCTACAGATATTCCGAGGGACTCGAGGGAG
ACGTCAACGGGTACATACAACTCACTGATTTCATCGATTTGATGACCAAA
ATCTACAGCGCGATGGGCAGCAGTGACTATTTGAAGGCAGCATATAATGC
CTTCGATTTTGATAAGGACGGTTTGGTAACATATGGCGAGCTACGTCACG
TTTTCATCAATCTTGGCGAAAAAATATCCGACGAAGAGTTCAATGAAGTG
TTTCGTCAGGCTGATGTTGATGGCGATGGCGTTATTAACTTCCGTGATTT
TTGTACAGCCTATAGATCCGCAAGCTTTCTAGACCAT
BO16920.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:28:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13898-RA | 456 | CG13898-PA | 1..453 | 17..469 | 2265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:28:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13898-RA | 625 | CG13898-RA | 79..531 | 17..469 | 2265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:28:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 803521..803973 | 469..17 | 2265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:28:46 has no hits.
BO16920.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:25:54 Download gff for
BO16920.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13898-RA | 1..456 | 17..473 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:46:04 Download gff for
BO16920.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13898-RA | 69..534 | 7..473 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:39:07 Download gff for
BO16920.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13898-RA | 79..531 | 17..471 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:25:54 Download gff for
BO16920.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13898-RA | 18..483 | 7..473 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:22:55 Download gff for
BO16920.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13898-RA | 79..531 | 17..471 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:22:55 Download gff for
BO16920.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 803519..803973 | 17..471 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:39:07 Download gff for
BO16920.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 803519..803973 | 17..471 | 99 | | Minus |
BO16920.pep Sequence
Translation from 16 to 487
> BO16920.pep
MESQDYILANDDLQDICEAFELCDPEKTGRIRADDLGEVMRTLGQNHTES
EIYRYSEGLEGDVNGYIQLTDFIDLMTKIYSAMGSSDYLKAAYNAFDFDK
DGLVTYGELRHVFINLGEKISDEEFNEVFRQADVDGDGVINFRDFCTAYR
SASFLDH
BO16920.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:56:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13898-PA | 151 | CG13898-PA | 1..151 | 1..151 | 794 | 100 | Plus |
| Cam-PD | 149 | CG8472-PD | 5..148 | 8..151 | 297 | 39.6 | Plus |
| Cam-PC | 149 | CG8472-PC | 5..148 | 8..151 | 297 | 39.6 | Plus |
| Cam-PE | 149 | CG8472-PE | 5..148 | 8..151 | 297 | 39.6 | Plus |
| Cam-PB | 149 | CG8472-PB | 5..148 | 8..151 | 297 | 39.6 | Plus |
