Clone BO16922 Report

Search the DGRC for BO16922

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:169
Well:22
Vector:pDNR-Dual
Associated Gene/TranscriptCG14113-RA
Protein status:BO16922.pep: validated full length
Sequenced Size:280

Clone Sequence Records

BO16922.3prime Sequence

278 bp (278 high quality bases) assembled on 2006-10-13

> BO16922.3prime
ATGGTCTAGAAAGCTTGCTGGATCCCGGGCCACGGCTTTATTCTCCTTGT
CATTCCAGTCGAATGACGGTGGCGCCACCTCAGCAACAGGATTCTGTGGC
TCACGGATTCCCATAACCTGATCGCTCAGTGATTTGTTTTCGCGCAGAAT
GCGGACATATCTGAGTGCATACTGCAGCTCCGACATGGGCAGGTCATGCT
CACGAATGAAGGACATGGCCTGATCAGTCTCCTCCTCCGTGTATACCTCT
TCTTCGGATGACATGTCGACTGATAACT

BO16922.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG14113-PA 249 CG14113-RA 1..246 264..19 1230 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:48:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG14113-RA 513 CG14113-RA 84..329 264..19 1230 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:48:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13329286..13329515 248..19 1150 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:48:18 has no hits.

BO16922.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:59:26 Download gff for BO16922.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14113-PA 1..249 15..264 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:42:51 Download gff for BO16922.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14113-RA 73..334 11..276 96   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:00:37 Download gff for BO16922.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14113-RA 73..334 11..276 96   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:00:37 Download gff for BO16922.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 13329288..13329520 11..246 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:42:51 Download gff for BO16922.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13322388..13322620 11..246 98   Minus

BO16922.5prime Sequence

278 bp (278 high quality bases) assembled on 2006-10-13

> BO16922.5prime
GAAGTTATCAGTCGACATGTCATCCGAAGAAGAGGTATACACGGAGGAGG
AGACTGATCAGGCCATGTCCTTCATTCGTGAGCATGACCTGCCCATGTCG
GAGCTGCAGTATGCACTCAGATATGTCCGCATTCTGCGCGAAAACAAATC
ACTGAGCGATCAGGTTATGGGAATCCGTGAGCCACAGAATCCTGTTGCTG
AGGTGGCGCCACCGTCATTCGACTGGAATGACAAGGAGAATAAAGCCGTG
GCCCGGGATCCAGCAAGCTTTCTAGACC

BO16922.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG14113-PA 249 CG14113-RA 1..246 17..262 1230 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:02:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG14113-RA 513 CG14113-RA 84..329 17..262 1230 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:02:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13329286..13329515 33..262 1150 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:02:36 has no hits.

BO16922.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:59:28 Download gff for BO16922.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14113-PA 1..249 17..266 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:24:39 Download gff for BO16922.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14113-RA 73..334 5..270 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:46:39 Download gff for BO16922.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14113-RA 73..334 5..270 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:46:39 Download gff for BO16922.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 13329288..13329520 35..270 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:24:39 Download gff for BO16922.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13322388..13322620 35..270 98   Plus

BO16922.complete Sequence

280 bp assembled on 2006-10-11

GenBank Submission: FJ633984

> BO16922.complete
GAAGTTATCAGTCGACATGTCATCCGAAGAAGAGGTATACACGGAGGAGG
AGACTGATCAGGCCATGTCCTTCATTCGTGAGCATGACCTGCCCATGTCG
GAGCTGCAGTATGCACTCAGATATGTCCGCATTCTGCGCGAAAACAAATC
ACTGAGCGATCAGGTTATGGGAATCCGTGAGCCACAGAATCCTGTTGCTG
AGGTGGCGCCACCGTCATTCGACTGGAATGACAAGGAGAATAAAGCCGTG
GCCCGGGATCCAGCAAGCTTTCTAGACCAT

BO16922.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:54:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG14113-RA 249 CG14113-PA 1..246 17..262 1230 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:54:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG14113-RA 513 CG14113-RA 84..329 17..262 1230 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:54:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13329286..13329515 33..262 1150 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:54:18 has no hits.

BO16922.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:25:57 Download gff for BO16922.complete
Subject Subject Range Query Range Percent Splice Strand
CG14113-RA 1..249 17..266 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:46:06 Download gff for BO16922.complete
Subject Subject Range Query Range Percent Splice Strand
CG14113-RA 1..251 17..270 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:15:25 Download gff for BO16922.complete
Subject Subject Range Query Range Percent Splice Strand
CG14113-RA 84..329 17..264 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:25:57 Download gff for BO16922.complete
Subject Subject Range Query Range Percent Splice Strand
CG14113-RA 1..251 17..270 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:30:37 Download gff for BO16922.complete
Subject Subject Range Query Range Percent Splice Strand
CG14113-RA 84..329 17..264 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:30:37 Download gff for BO16922.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13329218..13329235 17..34 100 -> Plus
3L 13329288..13329515 35..264 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:15:25 Download gff for BO16922.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13322318..13322335 17..34 100 -> Plus
arm_3L 13322388..13322615 35..264 99   Plus

BO16922.pep Sequence

Translation from 16 to 280

> BO16922.pep
MSSEEEVYTEEETDQAMSFIREHDLPMSELQYALRYVRILRENKSLSDQV
MGIREPQNPVAEVAPPSFDWNDKENKAVARDPASFLDH

BO16922.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:56:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG14113-PA 82 CG14113-PA 1..82 1..82 423 100 Plus