Clone Sequence Records
BO16922.3prime Sequence
278 bp (278 high quality bases) assembled on 2006-10-13
> BO16922.3prime
ATGGTCTAGAAAGCTTGCTGGATCCCGGGCCACGGCTTTATTCTCCTTGT
CATTCCAGTCGAATGACGGTGGCGCCACCTCAGCAACAGGATTCTGTGGC
TCACGGATTCCCATAACCTGATCGCTCAGTGATTTGTTTTCGCGCAGAAT
GCGGACATATCTGAGTGCATACTGCAGCTCCGACATGGGCAGGTCATGCT
CACGAATGAAGGACATGGCCTGATCAGTCTCCTCCTCCGTGTATACCTCT
TCTTCGGATGACATGTCGACTGATAACT
BO16922.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14113-PA | 249 | CG14113-RA | 1..246 | 264..19 | 1230 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:48:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14113-RA | 513 | CG14113-RA | 84..329 | 264..19 | 1230 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:48:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13329286..13329515 | 248..19 | 1150 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:48:18 has no hits.
BO16922.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:59:26 Download gff for
BO16922.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14113-PA | 1..249 | 15..264 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:42:51 Download gff for
BO16922.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14113-RA | 73..334 | 11..276 | 96 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:00:37 Download gff for
BO16922.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14113-RA | 73..334 | 11..276 | 96 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:00:37 Download gff for
BO16922.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13329288..13329520 | 11..246 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:42:51 Download gff for
BO16922.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13322388..13322620 | 11..246 | 98 | | Minus |
BO16922.5prime Sequence
278 bp (278 high quality bases) assembled on 2006-10-13
> BO16922.5prime
GAAGTTATCAGTCGACATGTCATCCGAAGAAGAGGTATACACGGAGGAGG
AGACTGATCAGGCCATGTCCTTCATTCGTGAGCATGACCTGCCCATGTCG
GAGCTGCAGTATGCACTCAGATATGTCCGCATTCTGCGCGAAAACAAATC
ACTGAGCGATCAGGTTATGGGAATCCGTGAGCCACAGAATCCTGTTGCTG
AGGTGGCGCCACCGTCATTCGACTGGAATGACAAGGAGAATAAAGCCGTG
GCCCGGGATCCAGCAAGCTTTCTAGACC
BO16922.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14113-PA | 249 | CG14113-RA | 1..246 | 17..262 | 1230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:02:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14113-RA | 513 | CG14113-RA | 84..329 | 17..262 | 1230 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:02:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13329286..13329515 | 33..262 | 1150 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:02:36 has no hits.
BO16922.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:59:28 Download gff for
BO16922.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14113-PA | 1..249 | 17..266 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:24:39 Download gff for
BO16922.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14113-RA | 73..334 | 5..270 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:46:39 Download gff for
BO16922.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14113-RA | 73..334 | 5..270 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:46:39 Download gff for
BO16922.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13329288..13329520 | 35..270 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:24:39 Download gff for
BO16922.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13322388..13322620 | 35..270 | 98 | | Plus |
BO16922.complete Sequence
280 bp assembled on 2006-10-11
GenBank Submission: FJ633984
> BO16922.complete
GAAGTTATCAGTCGACATGTCATCCGAAGAAGAGGTATACACGGAGGAGG
AGACTGATCAGGCCATGTCCTTCATTCGTGAGCATGACCTGCCCATGTCG
GAGCTGCAGTATGCACTCAGATATGTCCGCATTCTGCGCGAAAACAAATC
ACTGAGCGATCAGGTTATGGGAATCCGTGAGCCACAGAATCCTGTTGCTG
AGGTGGCGCCACCGTCATTCGACTGGAATGACAAGGAGAATAAAGCCGTG
GCCCGGGATCCAGCAAGCTTTCTAGACCAT
BO16922.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:54:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14113-RA | 249 | CG14113-PA | 1..246 | 17..262 | 1230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:54:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14113-RA | 513 | CG14113-RA | 84..329 | 17..262 | 1230 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:54:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13329286..13329515 | 33..262 | 1150 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:54:18 has no hits.
BO16922.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:25:57 Download gff for
BO16922.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14113-RA | 1..249 | 17..266 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:46:06 Download gff for
BO16922.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14113-RA | 1..251 | 17..270 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:15:25 Download gff for
BO16922.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14113-RA | 84..329 | 17..264 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:25:57 Download gff for
BO16922.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14113-RA | 1..251 | 17..270 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:30:37 Download gff for
BO16922.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14113-RA | 84..329 | 17..264 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:30:37 Download gff for
BO16922.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13329218..13329235 | 17..34 | 100 | -> | Plus |
3L | 13329288..13329515 | 35..264 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:15:25 Download gff for
BO16922.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13322318..13322335 | 17..34 | 100 | -> | Plus |
arm_3L | 13322388..13322615 | 35..264 | 99 | | Plus |
BO16922.pep Sequence
Translation from 16 to 280
> BO16922.pep
MSSEEEVYTEEETDQAMSFIREHDLPMSELQYALRYVRILRENKSLSDQV
MGIREPQNPVAEVAPPSFDWNDKENKAVARDPASFLDH
BO16922.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:56:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14113-PA | 82 | CG14113-PA | 1..82 | 1..82 | 423 | 100 | Plus |