Clone Sequence Records
BO16929.5prime Sequence
458 bp (458 high quality bases) assembled on 2006-10-13
> BO16929.5prime
NAANTTATCANTCNACATGTGTGGACNGNCTGTGCGCGATTGGTTGGTGC
TATTGACCATGGAGAAGTACATTGGTAAATTCCTGGAGCGGGGGTACGAC
AGCATTGAACGCTGCAAGCTTATTATCGTAAGCGATCTGATCATGCTGGG
AGTGGATAATCCCGCTCATAGGAAGCTCCTGCTCGAGGGAGTCCGGTTCT
TGGTCAACGCACCCGAGCAGTTCATCTGCAAGGAGCCGTGTGAGCTGCAT
GAGGAGATTGAACTGAAATTAGACCCGGATGTTGAGTTGTTTGCTTCGCT
AAAGTGCCTGGAAAATGTTGATTTCCTAGAAACACCTGTTCCATATTCGC
TAACATCTCCACAAAAGACGCTCACAACTCGGGACTCTTGCAAATGGAAT
GTCAAAGGTGTGGATCAGTTACCTTCCGATAACATATTTAACGCAAGCTT
TCTAGACC
BO16929.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17625-PA | 429 | CG17625-RA | 1..426 | 17..442 | 2092 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:42:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17625-RA | 559 | CG17625-RA | 56..481 | 17..442 | 2108 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:42:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22686904..22687329 | 17..442 | 2108 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-03 06:42:31 has no hits.
BO16929.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:59:36 Download gff for
BO16929.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17625-PA | 1..429 | 17..446 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:30:48 Download gff for
BO16929.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17625-RA | 56..484 | 17..446 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:38:48 Download gff for
BO16929.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17625-RA | 56..484 | 17..446 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:38:48 Download gff for
BO16929.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22686904..22687332 | 17..446 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:30:48 Download gff for
BO16929.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18512626..18513054 | 17..446 | 99 | | Plus |
BO16929.complete Sequence
460 bp assembled on 2006-10-11
GenBank Submission: FJ633985
> BO16929.complete
GAAGTTATCAGTCGACATGTGTGGACGGGCTGTGCGCGATTGGTTGGTGC
TATTGACCATGGAGAAGTACATTGGTAAATTCCTGGAGCGGGGGTACGAC
AGCATTGAACGCTGCAAGCTTATTATCGTAAGCGATCTGATCATGCTGGG
AGTGGATAATCCCGCTCATAGGAAGCTCCTGCTCGAGGGAGTCCGGTTCT
TGGTCAACGCACCCGAGCAGTTCATCTGCAAGGAGCCGTGTGAGCTGCAT
GAGGAGATTGAACTGAAATTAGACCCGGATGTTGAGTTGTTTGCTTCGCT
AAAGTGCCTGGAAAATGTTGATTTCCTAGAAACACCTGTTCCATATTCGC
TAACATCTCCACAAAAGACGCTCACAACTCGGGACTCTTGCAAATGGAAT
GTCAAAGGTGTGGATCAGTTACCTTCCGATAACATATTTAACGCAAGCTT
TCTAGACCAT
BO16929.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:47:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17625-RA | 429 | CG17625-PA | 1..426 | 17..442 | 2130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:47:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17625-RA | 559 | CG17625-RA | 56..481 | 17..442 | 2130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:47:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22686904..22687329 | 17..442 | 2130 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:47:28 has no hits.
BO16929.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:25:59 Download gff for
BO16929.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17625-RA | 1..429 | 17..446 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:46:07 Download gff for
BO16929.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17625-RA | 56..484 | 17..446 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:44:35 Download gff for
BO16929.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17625-RA | 56..481 | 17..444 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:26:00 Download gff for
BO16929.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17625-RA | 56..484 | 17..446 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:03:46 Download gff for
BO16929.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17625-RA | 56..481 | 17..444 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:03:46 Download gff for
BO16929.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22686904..22687329 | 17..444 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:44:35 Download gff for
BO16929.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18512626..18513051 | 17..444 | 99 | | Plus |
BO16929.pep Sequence
Translation from 16 to 460
> BO16929.pep
MCGRAVRDWLVLLTMEKYIGKFLERGYDSIERCKLIIVSDLIMLGVDNPA
HRKLLLEGVRFLVNAPEQFICKEPCELHEEIELKLDPDVELFASLKCLEN
VDFLETPVPYSLTSPQKTLTTRDSCKWNVKGVDQLPSDNIFNASFLDH
BO16929.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:56:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17625-PA | 142 | CG17625-PA | 1..142 | 1..142 | 751 | 100 | Plus |
| SKIP-PH | 128 | CG31163-PH | 7..118 | 6..111 | 137 | 36.6 | Plus |
