Clone Sequence Records
BO16935.3prime Sequence
497 bp (497 high quality bases) assembled on 2006-10-13
> BO16935.3prime
ATGGTCTAGAAAGCTTGCGCTAAGCAGGGCACTCCTTCGCAGCTTTGTGA
TCGAATCCAGCGCTTCTCCTAGCTGCCGCTGCAGATTAGTGCTCTCGGCG
ACCAGCTCTATGCAGTCCTTGAACTTGTTAACAGCATTGCGCAAGCTCAT
CGGTGGCAGTACCGAGAACCAATGCAGGGGCTCCACGAAGCCCTTGGACT
TGTCAACCGCCTGTCGCTCGATGCAGACGCCATCCGTGGAGTCCACGACC
CGGCAGAGGGCGTTAAACTCGGCACTGTTCTCCGTGGGAATCTGGGCCGT
GGACACGCACTGGCTGCCTCCGTGCTGAAATCTAGTGCGGGCCAGGAGAA
TCGCCCCACTGGCGTTACATCGCTCCAAATTTATCCGACACTGGGTGTGC
TCCTCAACGAGGTGGAACATGTCCAGGTACAAGTCATCCAGTAGCTGGCC
CGCGGCCTCCTTTTCGCTTCTTTGAATGCTCATGTCGACTGATAACT
BO16935.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14671-PA | 468 | CG14671-RA | 1..465 | 483..19 | 2325 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:54:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14671-RB | 774 | CG14671-RB | 91..555 | 483..19 | 2325 | 100 | Minus |
| CG14671-RA | 629 | CG14671-RA | 91..555 | 483..19 | 2325 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:54:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5564405..5564725 | 163..483 | 1605 | 100 | Plus |
| 3R | 32079331 | 3R | 5564196..5564340 | 19..163 | 725 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:54:31 has no hits.
BO16935.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:59:43 Download gff for
BO16935.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14671-PA | 1..468 | 18..483 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:21:03 Download gff for
BO16935.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14671-RA | 81..555 | 19..492 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:05:41 Download gff for
BO16935.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14671-RA | 81..555 | 19..492 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:05:41 Download gff for
BO16935.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5564196..5564340 | 19..163 | 100 | <- | Plus |
| 3R | 5564406..5564735 | 164..492 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:21:03 Download gff for
BO16935.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1389918..1390062 | 19..163 | 100 | <- | Plus |
| arm_3R | 1390128..1390457 | 164..492 | 98 | | Plus |
BO16935.5prime Sequence
497 bp (497 high quality bases) assembled on 2006-10-13
> BO16935.5prime
GAAGTTATCAGTCGACATGAGCATTCAAAGAAGCGAAAAGGAGGCCGCGG
GCCAGCTACTGGATGACTTGTACCTGGACATGTTCCACCTCGTTGAGGAG
CACACCCAGTGTCGGATAAATTTGGAGCGATGTAACGCCAGTGGGGCGAT
TCTCCTGGCCCGCACTAGATTTCAGCACGGAGGCAGCCAGTGCGTGTCCA
CGGCCCAGATTCCCACGGAGAACAGTGCCGAGTTTAACGCCCTCTGCCGG
GTCGTGGACTCCACGGATGGCGTCTGCATCGAGCGACAGGCGGTTGACAA
GTCCAAGGGCTTCGTGGAGCCCCTGCATTGGTTCTCGGTACTGCCACCGA
TGAGCTTGCGCAATGCTGTTAACAAGTTCAAGGACTGCATAGAGCTGGTC
GCCGAGAGCACTAATCTGCAGCGGCAGCTAGGAGAAGCGCTGGATTCGAT
CACAAAGCTGCGAAGGAGTGCCCTGCTTAGCGCAAGCTTTCTAGACC
BO16935.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14671-PA | 468 | CG14671-RA | 1..465 | 17..481 | 2325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:01:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14671-RB | 774 | CG14671-RB | 91..555 | 17..481 | 2325 | 100 | Plus |
| CG14671-RA | 629 | CG14671-RA | 91..555 | 17..481 | 2325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:01:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5564405..5564725 | 337..17 | 1605 | 100 | Minus |
| 3R | 32079331 | 3R | 5564196..5564340 | 481..337 | 725 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 12:01:16 has no hits.
BO16935.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:59:44 Download gff for
BO16935.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14671-PA | 1..468 | 17..482 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:38:59 Download gff for
BO16935.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14671-RA | 81..555 | 8..481 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:43:52 Download gff for
BO16935.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14671-RA | 81..555 | 8..481 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:43:52 Download gff for
BO16935.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5564196..5564340 | 337..481 | 100 | <- | Minus |
| 3R | 5564406..5564735 | 8..336 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:38:59 Download gff for
BO16935.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1389918..1390062 | 337..481 | 100 | <- | Minus |
| arm_3R | 1390128..1390457 | 8..336 | 98 | | Minus |
BO16935.complete Sequence
499 bp assembled on 2006-10-11
GenBank Submission: FJ633986
> BO16935.complete
GAAGTTATCAGTCGACATGAGCATTCAAAGAAGCGAAAAGGAGGCCGCGG
GCCAGCTACTGGATGACTTGTACCTGGACATGTTCCACCTCGTTGAGGAG
CACACCCAGTGTCGGATAAATTTGGAGCGATGTAACGCCAGTGGGGCGAT
TCTCCTGGCCCGCACTAGATTTCAGCACGGAGGCAGCCAGTGCGTGTCCA
CGGCCCAGATTCCCACGGAGAACAGTGCCGAGTTTAACGCCCTCTGCCGG
GTCGTGGACTCCACGGATGGCGTCTGCATCGAGCGACAGGCGGTTGACAA
GTCCAAGGGCTTCGTGGAGCCCCTGCATTGGTTCTCGGTACTGCCACCGA
TGAGCTTGCGCAATGCTGTTAACAAGTTCAAGGACTGCATAGAGCTGGTC
GCCGAGAGCACTAATCTGCAGCGGCAGCTAGGAGAAGCGCTGGATTCGAT
CACAAAGCTGCGAAGGAGTGCCCTGCTTAGCGCAAGCTTTCTAGACCAT
BO16935.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:41:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14671-RB | 468 | CG14671-PB | 1..465 | 17..481 | 2325 | 100 | Plus |
| CG14671-RA | 468 | CG14671-PA | 1..465 | 17..481 | 2325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:41:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14671-RB | 774 | CG14671-RB | 91..555 | 17..481 | 2325 | 100 | Plus |
| CG14671-RA | 629 | CG14671-RA | 91..555 | 17..481 | 2325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:41:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5564405..5564725 | 337..17 | 1605 | 100 | Minus |
| 3R | 32079331 | 3R | 5564196..5564340 | 481..337 | 725 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:41:05 has no hits.
BO16935.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:26:02 Download gff for
BO16935.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14671-RA | 1..468 | 17..482 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:46:09 Download gff for
BO16935.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14671-RA | 1..468 | 17..482 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:20:22 Download gff for
BO16935.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14671-RA | 91..555 | 17..483 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:26:02 Download gff for
BO16935.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14671-RA | 1..468 | 17..482 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:15:11 Download gff for
BO16935.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14671-RA | 91..555 | 17..483 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:15:11 Download gff for
BO16935.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5564194..5564340 | 337..483 | 98 | <- | Minus |
| 3R | 5564406..5564725 | 17..336 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:20:22 Download gff for
BO16935.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1389916..1390062 | 337..483 | 98 | <- | Minus |
| arm_3R | 1390128..1390447 | 17..336 | 100 | | Minus |
BO16935.pep Sequence
Translation from 16 to 499
> BO16935.pep
MSIQRSEKEAAGQLLDDLYLDMFHLVEEHTQCRINLERCNASGAILLART
RFQHGGSQCVSTAQIPTENSAEFNALCRVVDSTDGVCIERQAVDKSKGFV
EPLHWFSVLPPMSLRNAVNKFKDCIELVAESTNLQRQLGEALDSITKLRR
SALLSASFLDH
BO16935.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:56:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14671-PB | 155 | CG14671-PB | 1..155 | 1..155 | 792 | 100 | Plus |
| CG14671-PA | 155 | CG14671-PA | 1..155 | 1..155 | 792 | 100 | Plus |
