Clone Sequence Records
BO16937.3prime Sequence
344 bp (344 high quality bases) assembled on 2006-10-13
> BO16937.3prime
ATGGTCTAGAAAGCTTGCGTAGTTGCGATATTTTTGGGAGCTCTTCAGCT
GCTCATCCTCCGAGCGCAGCCTGCTCTCGCTCATCTTCATCTTCCAGTTT
TCCGAATAGGTCACCAGCTCCACCACCGTCTTGAATGTGACACTTTTCGA
TGGTTTAACGCCTTTCAGGAGTTTTGCCTTCTCTTTATTGCTGGGATACT
TCATGTAATCGTATTCAACCGACTGATCCGCTACCTCATCGATGATATCC
TTTTTGAACTCGACCTTCTGAGTTCCTGGATGTTTGTCCAGCTTCTTGGG
TTTTAGGCGCTGTTTTACTGGGCTGTCCATGTCGACTGATAACT
BO16937.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15705-PA | 315 | CG15705-RA | 1..312 | 330..19 | 1560 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:26:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15705-RA | 465 | CG15705-RA | 71..384 | 332..19 | 1570 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:26:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16281020..16281303 | 332..49 | 1420 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 10:26:49 has no hits.
BO16937.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:59:47 Download gff for
BO16937.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15705-PA | 1..315 | 16..330 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:41:44 Download gff for
BO16937.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15705-RA | 66..395 | 9..339 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:26:30 Download gff for
BO16937.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15705-RA | 66..395 | 9..339 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:26:30 Download gff for
BO16937.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16281015..16281303 | 49..339 | 98 | -> | Minus |
2R | 16281519..16281559 | 9..48 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:41:44 Download gff for
BO16937.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12168520..12168808 | 49..339 | 98 | -> | Minus |
arm_2R | 12169024..12169064 | 9..48 | 92 | | Minus |
BO16937.5prime Sequence
344 bp (344 high quality bases) assembled on 2006-10-13
> BO16937.5prime
GAAGTTATCAGTCGACATGGACAGCCCAGTAAAACAGCGCCTAAAACCCA
AGAAGCTGGACAAACATCCAGGAACTCAGAAGGTCGAGTTCAAAAAGGAT
ATCATCGATGAGGTAGCGGATCAGTCGGTTGAATACGATTACATGAAGTA
TCCCAGCAATAAAGAGAAGGCAAAACTCCTGAAAGGCGTTAAACCATCGA
AAAGTGTCACATTCAAGACGGTGGTGGAGCTGGTGACCTATTCGGAAAAC
TGGAAGATGAAGATGAGCGAGAGCAGGCTGCGCTCGGAGGATGAGCAGCT
GAAGAGCTCCCAAAAATATCGCAACTACGCAAGCTTTCTAGACC
BO16937.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15705-PA | 315 | CG15705-RA | 1..312 | 17..328 | 1560 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:29:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15705-RA | 465 | CG15705-RA | 71..384 | 15..328 | 1570 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:29:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16281020..16281303 | 15..298 | 1420 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:29:56 has no hits.
BO16937.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:59:47 Download gff for
BO16937.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15705-PA | 1..315 | 17..331 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:06:26 Download gff for
BO16937.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15705-RA | 66..395 | 8..338 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:42:25 Download gff for
BO16937.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15705-RA | 66..395 | 8..338 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:42:25 Download gff for
BO16937.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16281015..16281303 | 8..298 | 98 | -> | Plus |
2R | 16281519..16281559 | 299..338 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:06:26 Download gff for
BO16937.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12168520..12168808 | 8..298 | 98 | -> | Plus |
arm_2R | 12169024..12169064 | 299..338 | 92 | | Plus |
BO16937.complete Sequence
346 bp assembled on 2006-10-11
GenBank Submission: FJ633987
> BO16937.complete
GAAGTTATCAGTCGACATGGACAGCCCAGTAAAACAGCGCCTAAAACCCA
AGAAGCTGGACAAACATCCAGGAACTCAGAAGGTCGAGTTCAAAAAGGAT
ATCATCGATGAGGTAGCGGATCAGTCGGTTGAATACGATTACATGAAGTA
TCCCAGCAATAAAGAGAAGGCAAAACTCCTGAAAGGCGTTAAACCATCGA
AAAGTGTCACATTCAAGACGGTGGTGGAGCTGGTGACCTATTCGGAAAAC
TGGAAGATGAAGATGAGCGAGAGCAGGCTGCGCTCGGAGGATGAGCAGCT
GAAGAGCTCCCAAAAATATCGCAACTACGCAAGCTTTCTAGACCAT
BO16937.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:37:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15705-RA | 315 | CG15705-PA | 1..312 | 17..328 | 1560 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:37:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15705-RA | 465 | CG15705-RA | 71..384 | 15..328 | 1570 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:37:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16281020..16281303 | 15..298 | 1420 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:37:05 has no hits.
BO16937.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:26:04 Download gff for
BO16937.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15705-RA | 1..315 | 17..331 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:46:11 Download gff for
BO16937.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15705-RA | 66..395 | 8..338 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:55:54 Download gff for
BO16937.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15705-RA | 73..384 | 17..330 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:26:04 Download gff for
BO16937.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15705-RA | 66..395 | 8..338 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:23:35 Download gff for
BO16937.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15705-RA | 73..384 | 17..330 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:23:35 Download gff for
BO16937.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16281022..16281303 | 17..298 | 100 | -> | Plus |
2R | 16281519..16281548 | 299..330 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:55:54 Download gff for
BO16937.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12168527..12168808 | 17..298 | 100 | -> | Plus |
arm_2R | 12169024..12169053 | 299..330 | 93 | | Plus |
BO16937.pep Sequence
Translation from 16 to 346
> BO16937.pep
MDSPVKQRLKPKKLDKHPGTQKVEFKKDIIDEVADQSVEYDYMKYPSNKE
KAKLLKGVKPSKSVTFKTVVELVTYSENWKMKMSESRLRSEDEQLKSSQK
YRNYASFLDH
BO16937.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:56:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15705-PA | 104 | CG15705-PA | 1..104 | 1..104 | 534 | 100 | Plus |