Clone Sequence Records
BO16938.3prime Sequence
410 bp (410 high quality bases) assembled on 2006-10-13
> BO16938.3prime
ATGGTCTAGAAAGCTTGCAGTCAGCAGACTGAGTCCATTCACGGCGTCTG
TGGGCACTCGGAAATTCCACTGGCGCTTCAAAGGCTTCGGCATCCGTTGG
TTGAGGAAGAAACTCCGGCCATAGTCGACGGGTTTCAGTCTCCGCTCGTA
GCCCTCTGGAAGATCATCCACATGGCAACTGATCTGCAGATACTCCAGGG
AGTCGTTCACCGTCAGTTTCTCTATGGAGCAATTATCTGCCAGATGCACA
AAGTCATCTTGGATCTTTTGAATTTCTTGACAGAGAGTGGCCAGACCGGC
TGACTCCTTTGGACTTCTGTAACTGTCGAAAAAGCCCTGAGCTAGAAAGG
ATAACGCAACGAATAGCAGCGCGAGGCACCGTGAATTTGGATTCATGTCG
ACTGATAACT
BO16938.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14974-PA | 381 | CG14974-RA | 1..378 | 396..19 | 1890 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:08:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14974-RA | 491 | CG14974-RA | 68..445 | 396..19 | 1890 | 100 | Minus |
CG14974-RC | 488 | CG14974-RC | 68..442 | 396..19 | 1835 | 99.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:08:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3620479..3620691 | 19..231 | 1065 | 100 | Plus |
3L | 28110227 | 3L | 3620872..3620965 | 303..396 | 470 | 100 | Plus |
3L | 28110227 | 3L | 3620742..3620812 | 232..302 | 355 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:08:23 has no hits.
BO16938.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:59:48 Download gff for
BO16938.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14974-PA | 1..381 | 16..396 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:41:31 Download gff for
BO16938.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14974-RA | 68..445 | 19..396 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:13:46 Download gff for
BO16938.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14974-RA | 68..445 | 19..396 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:13:46 Download gff for
BO16938.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3620479..3620691 | 19..231 | 100 | <- | Plus |
3L | 3620742..3620812 | 232..302 | 100 | <- | Plus |
3L | 3620872..3620965 | 303..396 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:41:31 Download gff for
BO16938.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3620479..3620691 | 19..231 | 100 | <- | Plus |
arm_3L | 3620742..3620812 | 232..302 | 100 | <- | Plus |
arm_3L | 3620872..3620965 | 303..396 | 100 | | Plus |
BO16938.5prime Sequence
410 bp (410 high quality bases) assembled on 2006-10-13
> BO16938.5prime
GAAGTTATCAGTCGACATGAATCCAAATTCACGGTGCCTCGCGCTGCTAT
TCGTTGCGTTATCCTTTCTAGCTCAGGGCTTTTTCGACAGTTACAGAAGT
CCAAAGGAGTCAGCCGGTCTGGCCACTCTCTGTCAAGAAATTCAAAAGAT
CCAAGATGACTTTGTGCATCTGGCAGATAATTGCTCCATAGAGAAACTGA
CGGTGAACGACTCCCTGGAGTATCTGCAGATCAGTTGCCATGTGGATGAT
CTTCCAGAGGGCTACGAGCGGAGACTGAAACCCGTCGACTATGGCCGGAG
TTTCTTCCTCAACCAACGGATGCCGAAGCCTTTGAAGCGCCAGTGGAATT
TCCGAGTGCCCACAGACGCCGTGAATGGACTCAGTCTGCTGACTGCAAGC
TTTCTAGACC
BO16938.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14974-PA | 381 | CG14974-RA | 1..378 | 17..394 | 1890 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:43:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14974-RA | 491 | CG14974-RA | 68..445 | 17..394 | 1890 | 100 | Plus |
CG14974-RC | 488 | CG14974-RC | 68..442 | 17..394 | 1835 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:42:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3620479..3620691 | 394..182 | 1065 | 100 | Minus |
3L | 28110227 | 3L | 3620872..3620965 | 110..17 | 470 | 100 | Minus |
3L | 28110227 | 3L | 3620742..3620812 | 181..111 | 355 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 06:43:01 has no hits.
BO16938.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:59:49 Download gff for
BO16938.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14974-PA | 1..381 | 17..397 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:30:56 Download gff for
BO16938.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14974-RA | 68..445 | 17..394 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:38:52 Download gff for
BO16938.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14974-RA | 68..445 | 17..394 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:38:52 Download gff for
BO16938.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3620479..3620691 | 182..394 | 100 | <- | Minus |
3L | 3620742..3620812 | 111..181 | 100 | <- | Minus |
3L | 3620872..3620965 | 17..110 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:30:56 Download gff for
BO16938.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3620479..3620691 | 182..394 | 100 | <- | Minus |
arm_3L | 3620742..3620812 | 111..181 | 100 | <- | Minus |
arm_3L | 3620872..3620965 | 17..110 | 100 | | Minus |
BO16938.complete Sequence
412 bp assembled on 2006-10-11
GenBank Submission: FJ633988
> BO16938.complete
GAAGTTATCAGTCGACATGAATCCAAATTCACGGTGCCTCGCGCTGCTAT
TCGTTGCGTTATCCTTTCTAGCTCAGGGCTTTTTCGACAGTTACAGAAGT
CCAAAGGAGTCAGCCGGTCTGGCCACTCTCTGTCAAGAAATTCAAAAGAT
CCAAGATGACTTTGTGCATCTGGCAGATAATTGCTCCATAGAGAAACTGA
CGGTGAACGACTCCCTGGAGTATCTGCAGATCAGTTGCCATGTGGATGAT
CTTCCAGAGGGCTACGAGCGGAGACTGAAACCCGTCGACTATGGCCGGAG
TTTCTTCCTCAACCAACGGATGCCGAAGCCTTTGAAGCGCCAGTGGAATT
TCCGAGTGCCCACAGACGCCGTGAATGGACTCAGTCTGCTGACTGCAAGC
TTTCTAGACCAT
BO16938.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:53:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14974-RA | 381 | CG14974-PA | 1..378 | 17..394 | 1890 | 100 | Plus |
CG14974-RC | 378 | CG14974-PC | 1..375 | 17..394 | 1810 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:53:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14974-RA | 491 | CG14974-RA | 68..445 | 17..394 | 1890 | 100 | Plus |
CG14974-RC | 488 | CG14974-RC | 68..442 | 17..394 | 1810 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:53:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3620479..3620691 | 394..182 | 1065 | 100 | Minus |
3L | 28110227 | 3L | 3620872..3620965 | 110..17 | 470 | 100 | Minus |
3L | 28110227 | 3L | 3620742..3620812 | 181..111 | 355 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:53:30 has no hits.
BO16938.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:26:06 Download gff for
BO16938.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14974-RA | 1..381 | 17..397 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:46:12 Download gff for
BO16938.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14974-RA | 53..430 | 17..394 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:31 Download gff for
BO16938.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14974-RA | 68..445 | 17..396 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:26:06 Download gff for
BO16938.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14974-RA | 37..414 | 17..394 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:55:01 Download gff for
BO16938.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14974-RA | 68..445 | 17..396 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:55:01 Download gff for
BO16938.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3620742..3620812 | 111..181 | 100 | <- | Minus |
3L | 3620872..3620965 | 17..110 | 100 | | Minus |
3L | 3620476..3620691 | 182..396 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:31 Download gff for
BO16938.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3620476..3620691 | 182..396 | 99 | <- | Minus |
arm_3L | 3620742..3620812 | 111..181 | 100 | <- | Minus |
arm_3L | 3620872..3620965 | 17..110 | 100 | | Minus |
BO16938.pep Sequence
Translation from 16 to 412
> BO16938.pep
MNPNSRCLALLFVALSFLAQGFFDSYRSPKESAGLATLCQEIQKIQDDFV
HLADNCSIEKLTVNDSLEYLQISCHVDDLPEGYERRLKPVDYGRSFFLNQ
RMPKPLKRQWNFRVPTDAVNGLSLLTASFLDH
BO16938.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:56:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14974-PA | 126 | CG14974-PA | 1..126 | 1..126 | 663 | 100 | Plus |
CG14974-PC | 125 | CG14974-PC | 1..125 | 1..126 | 647 | 99.2 | Plus |