Clone BO16938 Report

Search the DGRC for BO16938

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:169
Well:38
Vector:pDNR-Dual
Associated Gene/TranscriptCG14974-RA
Protein status:BO16938.pep: validated full length
Sequenced Size:412

Clone Sequence Records

BO16938.3prime Sequence

410 bp (410 high quality bases) assembled on 2006-10-13

> BO16938.3prime
ATGGTCTAGAAAGCTTGCAGTCAGCAGACTGAGTCCATTCACGGCGTCTG
TGGGCACTCGGAAATTCCACTGGCGCTTCAAAGGCTTCGGCATCCGTTGG
TTGAGGAAGAAACTCCGGCCATAGTCGACGGGTTTCAGTCTCCGCTCGTA
GCCCTCTGGAAGATCATCCACATGGCAACTGATCTGCAGATACTCCAGGG
AGTCGTTCACCGTCAGTTTCTCTATGGAGCAATTATCTGCCAGATGCACA
AAGTCATCTTGGATCTTTTGAATTTCTTGACAGAGAGTGGCCAGACCGGC
TGACTCCTTTGGACTTCTGTAACTGTCGAAAAAGCCCTGAGCTAGAAAGG
ATAACGCAACGAATAGCAGCGCGAGGCACCGTGAATTTGGATTCATGTCG
ACTGATAACT

BO16938.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG14974-PA 381 CG14974-RA 1..378 396..19 1890 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:08:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG14974-RA 491 CG14974-RA 68..445 396..19 1890 100 Minus
CG14974-RC 488 CG14974-RC 68..442 396..19 1835 99.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:08:19
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3620479..3620691 19..231 1065 100 Plus
3L 28110227 3L 3620872..3620965 303..396 470 100 Plus
3L 28110227 3L 3620742..3620812 232..302 355 100 Plus
Blast to na_te.dros performed on 2015-02-02 18:08:23 has no hits.

BO16938.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:59:48 Download gff for BO16938.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14974-PA 1..381 16..396 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:41:31 Download gff for BO16938.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14974-RA 68..445 19..396 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:13:46 Download gff for BO16938.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14974-RA 68..445 19..396 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:13:46 Download gff for BO16938.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 3620479..3620691 19..231 100 <- Plus
3L 3620742..3620812 232..302 100 <- Plus
3L 3620872..3620965 303..396 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:41:31 Download gff for BO16938.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3620479..3620691 19..231 100 <- Plus
arm_3L 3620742..3620812 232..302 100 <- Plus
arm_3L 3620872..3620965 303..396 100   Plus

BO16938.5prime Sequence

410 bp (410 high quality bases) assembled on 2006-10-13

> BO16938.5prime
GAAGTTATCAGTCGACATGAATCCAAATTCACGGTGCCTCGCGCTGCTAT
TCGTTGCGTTATCCTTTCTAGCTCAGGGCTTTTTCGACAGTTACAGAAGT
CCAAAGGAGTCAGCCGGTCTGGCCACTCTCTGTCAAGAAATTCAAAAGAT
CCAAGATGACTTTGTGCATCTGGCAGATAATTGCTCCATAGAGAAACTGA
CGGTGAACGACTCCCTGGAGTATCTGCAGATCAGTTGCCATGTGGATGAT
CTTCCAGAGGGCTACGAGCGGAGACTGAAACCCGTCGACTATGGCCGGAG
TTTCTTCCTCAACCAACGGATGCCGAAGCCTTTGAAGCGCCAGTGGAATT
TCCGAGTGCCCACAGACGCCGTGAATGGACTCAGTCTGCTGACTGCAAGC
TTTCTAGACC

BO16938.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG14974-PA 381 CG14974-RA 1..378 17..394 1890 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:43:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG14974-RA 491 CG14974-RA 68..445 17..394 1890 100 Plus
CG14974-RC 488 CG14974-RC 68..442 17..394 1835 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:42:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3620479..3620691 394..182 1065 100 Minus
3L 28110227 3L 3620872..3620965 110..17 470 100 Minus
3L 28110227 3L 3620742..3620812 181..111 355 100 Minus
Blast to na_te.dros performed on 2015-02-03 06:43:01 has no hits.

BO16938.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:59:49 Download gff for BO16938.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14974-PA 1..381 17..397 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:30:56 Download gff for BO16938.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14974-RA 68..445 17..394 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:38:52 Download gff for BO16938.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14974-RA 68..445 17..394 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:38:52 Download gff for BO16938.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 3620479..3620691 182..394 100 <- Minus
3L 3620742..3620812 111..181 100 <- Minus
3L 3620872..3620965 17..110 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:30:56 Download gff for BO16938.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3620479..3620691 182..394 100 <- Minus
arm_3L 3620742..3620812 111..181 100 <- Minus
arm_3L 3620872..3620965 17..110 100   Minus

BO16938.complete Sequence

412 bp assembled on 2006-10-11

GenBank Submission: FJ633988

> BO16938.complete
GAAGTTATCAGTCGACATGAATCCAAATTCACGGTGCCTCGCGCTGCTAT
TCGTTGCGTTATCCTTTCTAGCTCAGGGCTTTTTCGACAGTTACAGAAGT
CCAAAGGAGTCAGCCGGTCTGGCCACTCTCTGTCAAGAAATTCAAAAGAT
CCAAGATGACTTTGTGCATCTGGCAGATAATTGCTCCATAGAGAAACTGA
CGGTGAACGACTCCCTGGAGTATCTGCAGATCAGTTGCCATGTGGATGAT
CTTCCAGAGGGCTACGAGCGGAGACTGAAACCCGTCGACTATGGCCGGAG
TTTCTTCCTCAACCAACGGATGCCGAAGCCTTTGAAGCGCCAGTGGAATT
TCCGAGTGCCCACAGACGCCGTGAATGGACTCAGTCTGCTGACTGCAAGC
TTTCTAGACCAT

BO16938.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:53:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG14974-RA 381 CG14974-PA 1..378 17..394 1890 100 Plus
CG14974-RC 378 CG14974-PC 1..375 17..394 1810 99.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:53:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG14974-RA 491 CG14974-RA 68..445 17..394 1890 100 Plus
CG14974-RC 488 CG14974-RC 68..442 17..394 1810 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:53:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3620479..3620691 394..182 1065 100 Minus
3L 28110227 3L 3620872..3620965 110..17 470 100 Minus
3L 28110227 3L 3620742..3620812 181..111 355 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:53:30 has no hits.

BO16938.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:26:06 Download gff for BO16938.complete
Subject Subject Range Query Range Percent Splice Strand
CG14974-RA 1..381 17..397 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:46:12 Download gff for BO16938.complete
Subject Subject Range Query Range Percent Splice Strand
CG14974-RA 53..430 17..394 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:31 Download gff for BO16938.complete
Subject Subject Range Query Range Percent Splice Strand
CG14974-RA 68..445 17..396 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:26:06 Download gff for BO16938.complete
Subject Subject Range Query Range Percent Splice Strand
CG14974-RA 37..414 17..394 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:55:01 Download gff for BO16938.complete
Subject Subject Range Query Range Percent Splice Strand
CG14974-RA 68..445 17..396 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:55:01 Download gff for BO16938.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3620742..3620812 111..181 100 <- Minus
3L 3620872..3620965 17..110 100   Minus
3L 3620476..3620691 182..396 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:31 Download gff for BO16938.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3620476..3620691 182..396 99 <- Minus
arm_3L 3620742..3620812 111..181 100 <- Minus
arm_3L 3620872..3620965 17..110 100   Minus

BO16938.pep Sequence

Translation from 16 to 412

> BO16938.pep
MNPNSRCLALLFVALSFLAQGFFDSYRSPKESAGLATLCQEIQKIQDDFV
HLADNCSIEKLTVNDSLEYLQISCHVDDLPEGYERRLKPVDYGRSFFLNQ
RMPKPLKRQWNFRVPTDAVNGLSLLTASFLDH

BO16938.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:56:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG14974-PA 126 CG14974-PA 1..126 1..126 663 100 Plus
CG14974-PC 125 CG14974-PC 1..125 1..126 647 99.2 Plus