Clone Sequence Records
BO16943.5prime Sequence
443 bp (443 high quality bases) assembled on 2006-10-13
> BO16943.5prime
GAAGTTATCAGTCGACATGGACGACTTAAATCCGCTGGCGGGCACTGCTC
ACCTCCTGGAAGAGGTTGACAAGAAACTGATGGTACTTTTGAGAGACGGA
CGGACTCTGATTGGATACCTGCGGTCCGTGGACCAGTTCGCCAACCTGGT
GCTGCAACGCACCATCGAGCGGATACATGTGGGCAACGAATACGGCGACA
TTCCTCGCGGAGTCTTCATCATTCGCGGGGAGAATGTGGTGCTACTGGGC
GAAATAGACCGTGAAAAGGAGCAGAAACTGCCACTCAAAGAGATATCCGT
CGATGAAATCCTGGACGCCCAGCGTAGGGAACAGGAGCAGCGGCAGGAGA
AACACCGCCTAGTATCCAAGGCACTAAAGGAACGAGGCCTGGCCGTAGAT
GCCAACATAATCAACGAGGACTTCTGCGCAAGCTTTCTAGACC
BO16943.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:49:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4279-PA | 414 | CG4279-RA | 1..411 | 17..427 | 2030 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:34:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
LSm1-RA | 588 | CG4279-RA | 78..489 | 16..427 | 2045 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:34:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21170300..21170485 | 257..72 | 930 | 100 | Minus |
2R | 25286936 | 2R | 21170068..21170238 | 427..257 | 855 | 100 | Minus |
2R | 25286936 | 2R | 21170540..21170595 | 71..16 | 265 | 98.2 | Minus |
Blast to na_te.dros performed on 2015-02-12 07:34:30 has no hits.
BO16943.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:59:55 Download gff for
BO16943.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4279-PA | 1..414 | 17..431 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:06:52 Download gff for
BO16943.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LSm1-RA | 69..493 | 5..432 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:20:27 Download gff for
BO16943.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LSm1-RA | 69..493 | 5..432 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:20:27 Download gff for
BO16943.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21170064..21170238 | 257..432 | 98 | <- | Minus |
2R | 21170301..21170485 | 72..256 | 100 | <- | Minus |
2R | 21170540..21170603 | 5..71 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:06:52 Download gff for
BO16943.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17057569..17057743 | 257..432 | 98 | <- | Minus |
arm_2R | 17057806..17057990 | 72..256 | 100 | <- | Minus |
arm_2R | 17058045..17058108 | 5..71 | 92 | | Minus |
BO16943.complete Sequence
445 bp assembled on 2007-10-17
GenBank Submission: FJ633989
> BO16943.complete
GAAGTTATCAGTCGACATGGACGACTTAAATCCGCTGGCGGGCACTGCTC
ACCTCCTGGAAGAGGTTGACAAGAAACTGATGGTACTTTTGAGAGACGGA
CGGACTCTGATTGGATACCTGCGGTCCGTGGACCAGTTCGCCAACCTGGT
GCTGCAACGCACCATCGAGCGGATACATGTGGGCAACGAATACGGCGACA
TTCCTCGCGGAGTCTTCATCATTCGCGGGGAGAATGTGGTGCTACTGGGC
GAAATAGACCGTGAAAAGGAGCAGAAACTGCCACTCAAAGAGATATCCGT
CGATGAAATCCTGGACGCCCAGCGTAGGGAACAGGAGCAGCGGCAGGAGA
AACACCGCCTAGTATCCAAGGCACTAAAGGAACGAGGCCTGGCCGTAGAT
GCCAACATAATCAACGAGGACTTCTGCGCAAGCTTTCTAGACCAT
BO16943.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:01:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
LSm1-RA | 414 | CG4279-PA | 1..411 | 17..427 | 2040 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:01:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
LSm1-RA | 588 | CG4279-RA | 78..489 | 16..427 | 2045 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:01:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21170300..21170485 | 257..72 | 930 | 100 | Minus |
2R | 25286936 | 2R | 21170068..21170238 | 427..257 | 855 | 100 | Minus |
2R | 25286936 | 2R | 21170540..21170595 | 71..16 | 265 | 98.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:01:45 has no hits.
BO16943.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:03:22 Download gff for
BO16943.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4279-RA | 1..414 | 17..431 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:16:59 Download gff for
BO16943.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4279-RA | 42..466 | 5..432 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:34 Download gff for
BO16943.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LSm1-RA | 79..489 | 17..429 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:46:52 Download gff for
BO16943.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4279-RA | 52..462 | 17..429 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:58:14 Download gff for
BO16943.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LSm1-RA | 79..489 | 17..429 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:58:14 Download gff for
BO16943.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21170301..21170485 | 72..256 | 100 | <- | Minus |
2R | 21170540..21170594 | 17..71 | 98 | | Minus |
2R | 21170066..21170238 | 257..429 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:34 Download gff for
BO16943.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17057571..17057743 | 257..429 | 98 | <- | Minus |
arm_2R | 17057806..17057990 | 72..256 | 100 | <- | Minus |
arm_2R | 17058045..17058099 | 17..71 | 98 | | Minus |
BO16943.pep Sequence
Translation from 16 to 445
> BO16943.pep
MDDLNPLAGTAHLLEEVDKKLMVLLRDGRTLIGYLRSVDQFANLVLQRTI
ERIHVGNEYGDIPRGVFIIRGENVVLLGEIDREKEQKLPLKEISVDEILD
AQRREQEQRQEKHRLVSKALKERGLAVDANIINEDFCASFLDH
BO16943.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:28:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
LSm1-PA | 137 | CG4279-PA | 1..137 | 1..137 | 686 | 100 | Plus |