Clone BO16944 Report

Search the DGRC for BO16944

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:169
Well:44
Vector:pDNR-Dual
Associated Gene/TranscriptVha16-2-RA
Protein status:BO16944.pep: validated full length
Sequenced Size:508

Clone Sequence Records

BO16944.3prime Sequence

506 bp (442 high quality bases) assembled on 2006-10-13

> BO16944.3prime
ATGGTCTAGAAAGCTTGCAAGCTTAGTGTACAAATAGATGGCCACAATGA
GGCCGTATAGAGCCAGGACCTCGGCGAAGATCAGGATCAGGACCATGCCC
ACGAAAAGGCGTGGCTGTTCGGCGGTACCCCGGACTCCAGCATCGCCTGC
GATTCCAATGGCTACTCCTGCGGTGAGTCCTGGAAGTCCGACGGACAATC
CGGCGCCCAGATGCACATAACTGTCTTCCATCGTATAATCATCGCCAATC
GATCCGGCTATCAGGACGGATACCACCAATCCGTAGATCGCAATAATTCC
CGCCATTACGACCGGAATGATGGCCTTCATGATCATATCCGGTCGATTGA
CCGCCATCTTGGCGATTCCGACACCGGAAACTGCTGTTCCGTAAGACGCT
CCCAAGGTCGTGAATATAATCGCAACTGCAGCCCCCGTGCATCCCAAGAA
GAAGGCGTATGATGGCTCTTCATTTAAAGCGGCAGTAACCATGTCGACTG
ATAACT

BO16944.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG32089-PA 477 Vha16-2-RA 1..474 492..19 2370 100 Minus
CG32090-PA 477 Vha16-3-RA 379..428 117..68 200 96 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:19:03
Subject Length Description Subject Range Query Range Score Percent Strand
Vha16-2-RA 595 CG32089-RA 41..514 492..19 2370 100 Minus
Vha16-3-RB 633 CG32090-RB 219..542 345..22 380 75.6 Minus
Vha16-3-RA 587 CG32090-RA 173..496 345..22 380 75.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:18:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11474998..11475471 492..19 2370 100 Minus
3L 28110227 3L 11473558..11473881 345..22 375 74.4 Minus
2L 23513712 2L 10736638..10736774 266..402 220 77.4 Plus
2R 25286936 2R 6627477..6627556 26..105 205 83.8 Plus
2L 23513712 2L 10736392..10736483 26..117 190 80.4 Plus
Blast to na_te.dros performed on 2015-02-10 16:19:00 has no hits.

BO16944.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:59:55 Download gff for BO16944.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32089-PA 1..477 18..492 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:12:39 Download gff for BO16944.3prime
Subject Subject Range Query Range Percent Splice Strand
Vha16-2-RA 31..521 10..504 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:45:52 Download gff for BO16944.3prime
Subject Subject Range Query Range Percent Splice Strand
Vha16-2-RA 31..521 10..504 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:45:52 Download gff for BO16944.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 11474988..11475478 10..504 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:12:39 Download gff for BO16944.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11468088..11468578 10..504 98   Minus

BO16944.5prime Sequence

497 bp (451 high quality bases) assembled on 2006-10-13

> BO16944.5prime
GAAGTTATCAGTCGACATGGTTACTGCCGCTTTAAATGAAGAGCCATCAT
ACGCCTTCTTCTTGGGATGCACGGGGGCTGCAGTTGCGATTATATTCACG
ACCTTGGGAGCGTCTTACGGAACAGCAGTTTCCGGTGTCGGAATCGCCAA
GATGGCGGTCAATCGACCGGATATGATCATGAAGGCCATCATTCCGGTCG
TAATGGCGGGAATTATTGCGATCTACGGATTGGTGGTATCCGTCCTGATA
GCCGGATCGATTGGCGATGATTATACGATGGAAGACAGTTATGTGCATCT
GGGCGCCGGATTGTCCGTCGGACTTCCAGGACTCACCGCAGGAGTAGCCA
TTGGAATCGCAGGCGATGCTGGAGTCCGGGGTACCGCCGAACAGCCACGC
CTTTTCGTGGGCATGGTCCTGATCCTGATCTTCGCCGAGGTCCTGGCTCT
ATACGGCCTCATTGTGGCCATCTATTTGTACACTAAGCTTGCAAGCT

BO16944.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG32089-PA 477 Vha16-2-RA 1..474 17..490 2370 100 Plus
CG32090-PA 477 Vha16-3-RA 379..428 392..441 200 96 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:48:41
Subject Length Description Subject Range Query Range Score Percent Strand
Vha16-2-RA 595 CG32089-RA 41..514 17..490 2370 100 Plus
Vha16-3-RB 633 CG32090-RB 219..542 164..487 380 75.6 Plus
Vha16-3-RA 587 CG32090-RA 173..496 164..487 380 75.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:48:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11474998..11475471 17..490 2370 100 Plus
3L 28110227 3L 11473558..11473881 164..487 375 74.4 Plus
2L 23513712 2L 10736638..10736774 243..107 220 77.4 Minus
2R 25286936 2R 6627477..6627556 483..404 205 83.8 Minus
2L 23513712 2L 10736392..10736483 483..392 190 80.4 Minus
Blast to na_te.dros performed on 2015-02-10 17:48:37 has no hits.

BO16944.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:59:56 Download gff for BO16944.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32089-PA 1..477 17..491 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:42:52 Download gff for BO16944.5prime
Subject Subject Range Query Range Percent Splice Strand
Vha16-2-RA 31..519 5..497 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:00:41 Download gff for BO16944.5prime
Subject Subject Range Query Range Percent Splice Strand
Vha16-2-RA 31..519 5..497 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:00:41 Download gff for BO16944.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 11474988..11475476 5..497 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:42:52 Download gff for BO16944.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11468088..11468576 5..497 98   Plus

BO16944.complete Sequence

508 bp assembled on 2006-10-11

GenBank Submission: FJ633990

> BO16944.complete
GAAGTTATCAGTCGACATGGTTACTGCCGCTTTAAATGAAGAGCCATCAT
ACGCCTTCTTCTTGGGATGCACGGGGGCTGCAGTTGCGATTATATTCACG
ACCTTGGGAGCGTCTTACGGAACAGCAGTTTCCGGTGTCGGAATCGCCAA
GATGGCGGTCAATCGACCGGATATGATCATGAAGGCCATCATTCCGGTCG
TAATGGCGGGAATTATTGCGATCTACGGATTGGTGGTATCCGTCCTGATA
GCCGGATCGATTGGCGATGATTATACGATGGAAGACAGTTATGTGCATCT
GGGCGCCGGATTGTCCGTCGGACTTCCAGGACTCACCGCAGGAGTAGCCA
TTGGAATCGCAGGCGATGCTGGAGTCCGGGGTACCGCCGAACAGCCACGC
CTTTTCGTGGGCATGGTCCTGATCCTGATCTTCGCCGAGGTCCTGGCTCT
ATACGGCCTCATTGTGGCCATCTATTTGTACACTAAGCTTGCAAGCTTTC
TAGACCAT

BO16944.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:48:14
Subject Length Description Subject Range Query Range Score Percent Strand
Vha16-2-RA 477 CG32089-PA 1..474 17..490 2370 100 Plus
Vha16-3-RB 477 CG32090-PB 151..474 164..487 375 74.4 Plus
Vha16-3-RA 477 CG32090-PA 151..474 164..487 375 74.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:48:15
Subject Length Description Subject Range Query Range Score Percent Strand
Vha16-2-RA 595 CG32089-RA 41..514 17..490 2370 100 Plus
Vha16-3-RB 633 CG32090-RB 219..542 164..487 375 74.4 Plus
Vha16-3-RA 587 CG32090-RA 173..496 164..487 375 74.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:48:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11474998..11475471 17..490 2370 100 Plus
3L 28110227 3L 11473558..11473881 164..487 375 74.4 Plus
2L 23513712 2L 10736638..10736774 243..107 220 77.4 Minus
2R 25286936 2R 6627477..6627556 483..404 205 83.8 Minus
2L 23513712 2L 10736392..10736483 483..392 190 80.4 Minus
Blast to na_te.dros performed on 2014-11-27 13:48:13 has no hits.

BO16944.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:06:54 Download gff for BO16944.complete
Subject Subject Range Query Range Percent Splice Strand
Vha16-2-RA 1..477 17..491 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:22:35 Download gff for BO16944.complete
Subject Subject Range Query Range Percent Splice Strand
Vha16-2-RA 1..477 17..491 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:25:17 Download gff for BO16944.complete
Subject Subject Range Query Range Percent Splice Strand
Vha16-2-RA 41..514 17..492 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:06:54 Download gff for BO16944.complete
Subject Subject Range Query Range Percent Splice Strand
Vha16-2-RA 1..477 17..491 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:56:19 Download gff for BO16944.complete
Subject Subject Range Query Range Percent Splice Strand
Vha16-2-RA 41..514 17..492 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:56:19 Download gff for BO16944.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11474998..11475471 17..492 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:25:17 Download gff for BO16944.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11468098..11468571 17..492 99   Plus

BO16944.pep Sequence

Translation from 16 to 508

> BO16944.pep
MVTAALNEEPSYAFFLGCTGAAVAIIFTTLGASYGTAVSGVGIAKMAVNR
PDMIMKAIIPVVMAGIIAIYGLVVSVLIAGSIGDDYTMEDSYVHLGAGLS
VGLPGLTAGVAIGIAGDAGVRGTAEQPRLFVGMVLILIFAEVLALYGLIV
AIYLYTKLASFLDH

BO16944.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:02:38
Subject Length Description Subject Range Query Range Score Percent Strand
Vha16-2-PA 158 CG32089-PA 1..158 1..158 774 100 Plus
Vha16-3-PB 158 CG32090-PB 5..158 4..157 582 76 Plus
Vha16-3-PA 158 CG32090-PA 5..158 4..157 582 76 Plus
Vha16-1-PB 159 CG3161-PB 1..159 1..157 529 68.6 Plus
Vha16-1-PA 159 CG3161-PA 1..159 1..157 529 68.6 Plus