Clone Sequence Records
BO16944.3prime Sequence
506 bp (442 high quality bases) assembled on 2006-10-13
> BO16944.3prime
ATGGTCTAGAAAGCTTGCAAGCTTAGTGTACAAATAGATGGCCACAATGA
GGCCGTATAGAGCCAGGACCTCGGCGAAGATCAGGATCAGGACCATGCCC
ACGAAAAGGCGTGGCTGTTCGGCGGTACCCCGGACTCCAGCATCGCCTGC
GATTCCAATGGCTACTCCTGCGGTGAGTCCTGGAAGTCCGACGGACAATC
CGGCGCCCAGATGCACATAACTGTCTTCCATCGTATAATCATCGCCAATC
GATCCGGCTATCAGGACGGATACCACCAATCCGTAGATCGCAATAATTCC
CGCCATTACGACCGGAATGATGGCCTTCATGATCATATCCGGTCGATTGA
CCGCCATCTTGGCGATTCCGACACCGGAAACTGCTGTTCCGTAAGACGCT
CCCAAGGTCGTGAATATAATCGCAACTGCAGCCCCCGTGCATCCCAAGAA
GAAGGCGTATGATGGCTCTTCATTTAAAGCGGCAGTAACCATGTCGACTG
ATAACT
BO16944.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32089-PA | 477 | Vha16-2-RA | 1..474 | 492..19 | 2370 | 100 | Minus |
CG32090-PA | 477 | Vha16-3-RA | 379..428 | 117..68 | 200 | 96 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:19:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha16-2-RA | 595 | CG32089-RA | 41..514 | 492..19 | 2370 | 100 | Minus |
Vha16-3-RB | 633 | CG32090-RB | 219..542 | 345..22 | 380 | 75.6 | Minus |
Vha16-3-RA | 587 | CG32090-RA | 173..496 | 345..22 | 380 | 75.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:18:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11474998..11475471 | 492..19 | 2370 | 100 | Minus |
3L | 28110227 | 3L | 11473558..11473881 | 345..22 | 375 | 74.4 | Minus |
2L | 23513712 | 2L | 10736638..10736774 | 266..402 | 220 | 77.4 | Plus |
2R | 25286936 | 2R | 6627477..6627556 | 26..105 | 205 | 83.8 | Plus |
2L | 23513712 | 2L | 10736392..10736483 | 26..117 | 190 | 80.4 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:19:00 has no hits.
BO16944.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:59:55 Download gff for
BO16944.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32089-PA | 1..477 | 18..492 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:12:39 Download gff for
BO16944.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha16-2-RA | 31..521 | 10..504 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:45:52 Download gff for
BO16944.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha16-2-RA | 31..521 | 10..504 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:45:52 Download gff for
BO16944.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11474988..11475478 | 10..504 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:12:39 Download gff for
BO16944.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11468088..11468578 | 10..504 | 98 | | Minus |
BO16944.5prime Sequence
497 bp (451 high quality bases) assembled on 2006-10-13
> BO16944.5prime
GAAGTTATCAGTCGACATGGTTACTGCCGCTTTAAATGAAGAGCCATCAT
ACGCCTTCTTCTTGGGATGCACGGGGGCTGCAGTTGCGATTATATTCACG
ACCTTGGGAGCGTCTTACGGAACAGCAGTTTCCGGTGTCGGAATCGCCAA
GATGGCGGTCAATCGACCGGATATGATCATGAAGGCCATCATTCCGGTCG
TAATGGCGGGAATTATTGCGATCTACGGATTGGTGGTATCCGTCCTGATA
GCCGGATCGATTGGCGATGATTATACGATGGAAGACAGTTATGTGCATCT
GGGCGCCGGATTGTCCGTCGGACTTCCAGGACTCACCGCAGGAGTAGCCA
TTGGAATCGCAGGCGATGCTGGAGTCCGGGGTACCGCCGAACAGCCACGC
CTTTTCGTGGGCATGGTCCTGATCCTGATCTTCGCCGAGGTCCTGGCTCT
ATACGGCCTCATTGTGGCCATCTATTTGTACACTAAGCTTGCAAGCT
BO16944.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32089-PA | 477 | Vha16-2-RA | 1..474 | 17..490 | 2370 | 100 | Plus |
CG32090-PA | 477 | Vha16-3-RA | 379..428 | 392..441 | 200 | 96 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:48:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha16-2-RA | 595 | CG32089-RA | 41..514 | 17..490 | 2370 | 100 | Plus |
Vha16-3-RB | 633 | CG32090-RB | 219..542 | 164..487 | 380 | 75.6 | Plus |
Vha16-3-RA | 587 | CG32090-RA | 173..496 | 164..487 | 380 | 75.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:48:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11474998..11475471 | 17..490 | 2370 | 100 | Plus |
3L | 28110227 | 3L | 11473558..11473881 | 164..487 | 375 | 74.4 | Plus |
2L | 23513712 | 2L | 10736638..10736774 | 243..107 | 220 | 77.4 | Minus |
2R | 25286936 | 2R | 6627477..6627556 | 483..404 | 205 | 83.8 | Minus |
2L | 23513712 | 2L | 10736392..10736483 | 483..392 | 190 | 80.4 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:48:37 has no hits.
BO16944.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:59:56 Download gff for
BO16944.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32089-PA | 1..477 | 17..491 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:42:52 Download gff for
BO16944.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha16-2-RA | 31..519 | 5..497 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:00:41 Download gff for
BO16944.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha16-2-RA | 31..519 | 5..497 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:00:41 Download gff for
BO16944.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11474988..11475476 | 5..497 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:42:52 Download gff for
BO16944.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11468088..11468576 | 5..497 | 98 | | Plus |
BO16944.complete Sequence
508 bp assembled on 2006-10-11
GenBank Submission: FJ633990
> BO16944.complete
GAAGTTATCAGTCGACATGGTTACTGCCGCTTTAAATGAAGAGCCATCAT
ACGCCTTCTTCTTGGGATGCACGGGGGCTGCAGTTGCGATTATATTCACG
ACCTTGGGAGCGTCTTACGGAACAGCAGTTTCCGGTGTCGGAATCGCCAA
GATGGCGGTCAATCGACCGGATATGATCATGAAGGCCATCATTCCGGTCG
TAATGGCGGGAATTATTGCGATCTACGGATTGGTGGTATCCGTCCTGATA
GCCGGATCGATTGGCGATGATTATACGATGGAAGACAGTTATGTGCATCT
GGGCGCCGGATTGTCCGTCGGACTTCCAGGACTCACCGCAGGAGTAGCCA
TTGGAATCGCAGGCGATGCTGGAGTCCGGGGTACCGCCGAACAGCCACGC
CTTTTCGTGGGCATGGTCCTGATCCTGATCTTCGCCGAGGTCCTGGCTCT
ATACGGCCTCATTGTGGCCATCTATTTGTACACTAAGCTTGCAAGCTTTC
TAGACCAT
BO16944.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:48:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha16-2-RA | 477 | CG32089-PA | 1..474 | 17..490 | 2370 | 100 | Plus |
Vha16-3-RB | 477 | CG32090-PB | 151..474 | 164..487 | 375 | 74.4 | Plus |
Vha16-3-RA | 477 | CG32090-PA | 151..474 | 164..487 | 375 | 74.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:48:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha16-2-RA | 595 | CG32089-RA | 41..514 | 17..490 | 2370 | 100 | Plus |
Vha16-3-RB | 633 | CG32090-RB | 219..542 | 164..487 | 375 | 74.4 | Plus |
Vha16-3-RA | 587 | CG32090-RA | 173..496 | 164..487 | 375 | 74.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:48:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11474998..11475471 | 17..490 | 2370 | 100 | Plus |
3L | 28110227 | 3L | 11473558..11473881 | 164..487 | 375 | 74.4 | Plus |
2L | 23513712 | 2L | 10736638..10736774 | 243..107 | 220 | 77.4 | Minus |
2R | 25286936 | 2R | 6627477..6627556 | 483..404 | 205 | 83.8 | Minus |
2L | 23513712 | 2L | 10736392..10736483 | 483..392 | 190 | 80.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:48:13 has no hits.
BO16944.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:06:54 Download gff for
BO16944.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha16-2-RA | 1..477 | 17..491 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:22:35 Download gff for
BO16944.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha16-2-RA | 1..477 | 17..491 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:25:17 Download gff for
BO16944.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha16-2-RA | 41..514 | 17..492 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:06:54 Download gff for
BO16944.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha16-2-RA | 1..477 | 17..491 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:56:19 Download gff for
BO16944.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha16-2-RA | 41..514 | 17..492 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:56:19 Download gff for
BO16944.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11474998..11475471 | 17..492 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:25:17 Download gff for
BO16944.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11468098..11468571 | 17..492 | 99 | | Plus |
BO16944.pep Sequence
Translation from 16 to 508
> BO16944.pep
MVTAALNEEPSYAFFLGCTGAAVAIIFTTLGASYGTAVSGVGIAKMAVNR
PDMIMKAIIPVVMAGIIAIYGLVVSVLIAGSIGDDYTMEDSYVHLGAGLS
VGLPGLTAGVAIGIAGDAGVRGTAEQPRLFVGMVLILIFAEVLALYGLIV
AIYLYTKLASFLDH
BO16944.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:02:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha16-2-PA | 158 | CG32089-PA | 1..158 | 1..158 | 774 | 100 | Plus |
Vha16-3-PB | 158 | CG32090-PB | 5..158 | 4..157 | 582 | 76 | Plus |
Vha16-3-PA | 158 | CG32090-PA | 5..158 | 4..157 | 582 | 76 | Plus |
Vha16-1-PB | 159 | CG3161-PB | 1..159 | 1..157 | 529 | 68.6 | Plus |
Vha16-1-PA | 159 | CG3161-PA | 1..159 | 1..157 | 529 | 68.6 | Plus |