Clone Sequence Records
BO16949.3prime Sequence
383 bp (383 high quality bases) assembled on 2006-10-13
> BO16949.3prime
ATGGTCTAGAAAGCTTGCCCAGGACGGAGCCCAGCCATGGCCAGCCCAAC
CATGTCCGGCCCACGGAGACGAGAGGAGGGTCGTGTGGAGGGCAGGAGCC
GCATAAGTCTTGATGATGGGAGCGGCATAGGTCTTCACCACCGGAGCCAC
AATCGGTTGGATGATGTGGGCCGAGCTGTGCACCTGGCTGATGCTCTGGT
GGGAGACGGCACTGGGCACGGTCTTGATGATGGCGCCCACCTTGGCCAGA
GCCGGTTCATGGATGATGGCAGGAGCGGCATAGCTGTGGAGCAGTGGACC
AGACTCCAAATAACCCGGACGGGCAGCCACGACGGCGAGCAGAGCGAAGA
ACACCACCAACTTGTACATGTCGACTGATAACT
BO16949.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13042-PA | 354 | CG13042-RA | 1..351 | 369..19 | 1755 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:10:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13042-RA | 571 | CG13042-RA | 66..416 | 369..19 | 1755 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:10:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16308001..16308340 | 19..358 | 1700 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:10:29 has no hits.
BO16949.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:00:02 Download gff for
BO16949.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13042-PA | 1..354 | 15..369 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:02:26 Download gff for
BO16949.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13042-RA | 57..419 | 15..379 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:18:09 Download gff for
BO16949.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13042-RA | 57..419 | 15..379 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:18:09 Download gff for
BO16949.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16307997..16308342 | 15..363 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:02:26 Download gff for
BO16949.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16301097..16301442 | 15..363 | 98 | | Plus |
BO16949.5prime Sequence
383 bp (383 high quality bases) assembled on 2006-10-13
> BO16949.5prime
GAAGTTATCAGTCGACATGTACAAGTTGGTGGTGTTCTTCGCTCTGCTCG
CCGTCGTGGCTGCCCGTCCGGGTTATTTGGAGTCTGGTCCACTGCTCCAC
AGCTATGCCGCTCCTGCCATCATCCATGAACCGGCTCTGGCCAAGGTGGG
CGCCATCATCAAGACCGTGCCCAGTGCCGTCTCCCACCAGAGCATCAGCC
AGGTGCACAGCTCGGCCCACATCATCCAACCGATTGTGGCTCCGGTGGTG
AAGACCTATGCCGCTCCCATCATCAAGACTTATGCGGCTCCTGCCCTCCA
CACGACCCTCCTCTCGTCTCCGTGGGCCGGACATGGTTGGGCTGGCCATG
GCTGGGCTCCGTCCTGGGCAAGCTTTCTAGACC
BO16949.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13042-PA | 354 | CG13042-RA | 1..351 | 17..367 | 1755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:36:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13042-RA | 571 | CG13042-RA | 66..416 | 17..367 | 1755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:36:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16308001..16308340 | 367..28 | 1700 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:36:10 has no hits.
BO16949.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:00:04 Download gff for
BO16949.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13042-PA | 1..354 | 17..371 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:23:21 Download gff for
BO16949.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13042-RA | 57..419 | 7..371 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:15:17 Download gff for
BO16949.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13042-RA | 57..419 | 7..371 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:15:17 Download gff for
BO16949.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16307997..16308342 | 23..371 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:23:21 Download gff for
BO16949.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16301097..16301442 | 23..371 | 98 | | Minus |
BO16949.complete Sequence
385 bp assembled on 2006-10-11
GenBank Submission: FJ633991
> BO16949.complete
GAAGTTATCAGTCGACATGTACAAGTTGGTGGTGTTCTTCGCTCTGCTCG
CCGTCGTGGCTGCCCGTCCGGGTTATTTGGAGTCTGGTCCACTGCTCCAC
AGCTATGCCGCTCCTGCCATCATCCATGAACCGGCTCTGGCCAAGGTGGG
CGCCATCATCAAGACCGTGCCCAGTGCCGTCTCCCACCAGAGCATCAGCC
AGGTGCACAGCTCGGCCCACATCATCCAACCGATTGTGGCTCCGGTGGTG
AAGACCTATGCCGCTCCCATCATCAAGACTTATGCGGCTCCTGCCCTCCA
CACGACCCTCCTCTCGTCTCCGTGGGCCGGACATGGTTGGGCTGGCCATG
GCTGGGCTCCGTCCTGGGCAAGCTTTCTAGACCAT
BO16949.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:13:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13042-RA | 354 | CG13042-PA | 1..351 | 17..367 | 1755 | 100 | Plus |
CG13043-RA | 447 | CG13043-PA | 107..183 | 117..193 | 175 | 81.8 | Plus |
CG13044-RA | 468 | CG13044-PA | 110..198 | 123..211 | 175 | 79.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:13:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13042-RA | 571 | CG13042-RA | 66..416 | 17..367 | 1755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:13:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16308001..16308340 | 367..28 | 1700 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:13:53 has no hits.
BO16949.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:33 Download gff for
BO16949.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13042-RA | 1..354 | 17..371 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:20:32 Download gff for
BO16949.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13042-RA | 1..354 | 17..371 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:43:10 Download gff for
BO16949.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13042-RA | 66..416 | 17..369 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:33 Download gff for
BO16949.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13042-RA | 1..354 | 17..371 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:48:13 Download gff for
BO16949.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13042-RA | 66..416 | 17..369 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:48:13 Download gff for
BO16949.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16307999..16308342 | 23..369 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:43:10 Download gff for
BO16949.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16301099..16301442 | 23..369 | 98 | | Minus |
BO16949.pep Sequence
Translation from 16 to 385
> BO16949.pep
MYKLVVFFALLAVVAARPGYLESGPLLHSYAAPAIIHEPALAKVGAIIKT
VPSAVSHQSISQVHSSAHIIQPIVAPVVKTYAAPIIKTYAAPALHTTLLS
SPWAGHGWAGHGWAPSWASFLDH
BO16949.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13042-PA | 117 | CG13042-PA | 1..117 | 1..117 | 611 | 100 | Plus |
CG13043-PA | 148 | CG13043-PA | 1..103 | 1..102 | 270 | 57.9 | Plus |
CG13044-PA | 155 | CG13044-PA | 1..119 | 1..109 | 245 | 50 | Plus |
CG13063-PA | 129 | CG13063-PA | 1..102 | 1..102 | 243 | 50 | Plus |
CG13041-PA | 124 | CG13041-PA | 1..87 | 1..96 | 206 | 46.9 | Plus |