Clone BO16949 Report

Search the DGRC for BO16949

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:169
Well:49
Vector:pDNR-Dual
Associated Gene/TranscriptCG13042-RA
Protein status:BO16949.pep: validated full length
Sequenced Size:385

Clone Sequence Records

BO16949.3prime Sequence

383 bp (383 high quality bases) assembled on 2006-10-13

> BO16949.3prime
ATGGTCTAGAAAGCTTGCCCAGGACGGAGCCCAGCCATGGCCAGCCCAAC
CATGTCCGGCCCACGGAGACGAGAGGAGGGTCGTGTGGAGGGCAGGAGCC
GCATAAGTCTTGATGATGGGAGCGGCATAGGTCTTCACCACCGGAGCCAC
AATCGGTTGGATGATGTGGGCCGAGCTGTGCACCTGGCTGATGCTCTGGT
GGGAGACGGCACTGGGCACGGTCTTGATGATGGCGCCCACCTTGGCCAGA
GCCGGTTCATGGATGATGGCAGGAGCGGCATAGCTGTGGAGCAGTGGACC
AGACTCCAAATAACCCGGACGGGCAGCCACGACGGCGAGCAGAGCGAAGA
ACACCACCAACTTGTACATGTCGACTGATAACT

BO16949.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG13042-PA 354 CG13042-RA 1..351 369..19 1755 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:10:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG13042-RA 571 CG13042-RA 66..416 369..19 1755 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:10:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16308001..16308340 19..358 1700 100 Plus
Blast to na_te.dros performed on 2015-02-11 09:10:29 has no hits.

BO16949.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:00:02 Download gff for BO16949.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13042-PA 1..354 15..369 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:02:26 Download gff for BO16949.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13042-RA 57..419 15..379 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:18:09 Download gff for BO16949.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13042-RA 57..419 15..379 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:18:09 Download gff for BO16949.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16307997..16308342 15..363 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:02:26 Download gff for BO16949.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16301097..16301442 15..363 98   Plus

BO16949.5prime Sequence

383 bp (383 high quality bases) assembled on 2006-10-13

> BO16949.5prime
GAAGTTATCAGTCGACATGTACAAGTTGGTGGTGTTCTTCGCTCTGCTCG
CCGTCGTGGCTGCCCGTCCGGGTTATTTGGAGTCTGGTCCACTGCTCCAC
AGCTATGCCGCTCCTGCCATCATCCATGAACCGGCTCTGGCCAAGGTGGG
CGCCATCATCAAGACCGTGCCCAGTGCCGTCTCCCACCAGAGCATCAGCC
AGGTGCACAGCTCGGCCCACATCATCCAACCGATTGTGGCTCCGGTGGTG
AAGACCTATGCCGCTCCCATCATCAAGACTTATGCGGCTCCTGCCCTCCA
CACGACCCTCCTCTCGTCTCCGTGGGCCGGACATGGTTGGGCTGGCCATG
GCTGGGCTCCGTCCTGGGCAAGCTTTCTAGACC

BO16949.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG13042-PA 354 CG13042-RA 1..351 17..367 1755 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:36:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG13042-RA 571 CG13042-RA 66..416 17..367 1755 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:36:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16308001..16308340 367..28 1700 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:36:10 has no hits.

BO16949.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:00:04 Download gff for BO16949.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13042-PA 1..354 17..371 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:23:21 Download gff for BO16949.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13042-RA 57..419 7..371 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:15:17 Download gff for BO16949.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13042-RA 57..419 7..371 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:15:17 Download gff for BO16949.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16307997..16308342 23..371 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:23:21 Download gff for BO16949.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16301097..16301442 23..371 98   Minus

BO16949.complete Sequence

385 bp assembled on 2006-10-11

GenBank Submission: FJ633991

> BO16949.complete
GAAGTTATCAGTCGACATGTACAAGTTGGTGGTGTTCTTCGCTCTGCTCG
CCGTCGTGGCTGCCCGTCCGGGTTATTTGGAGTCTGGTCCACTGCTCCAC
AGCTATGCCGCTCCTGCCATCATCCATGAACCGGCTCTGGCCAAGGTGGG
CGCCATCATCAAGACCGTGCCCAGTGCCGTCTCCCACCAGAGCATCAGCC
AGGTGCACAGCTCGGCCCACATCATCCAACCGATTGTGGCTCCGGTGGTG
AAGACCTATGCCGCTCCCATCATCAAGACTTATGCGGCTCCTGCCCTCCA
CACGACCCTCCTCTCGTCTCCGTGGGCCGGACATGGTTGGGCTGGCCATG
GCTGGGCTCCGTCCTGGGCAAGCTTTCTAGACCAT

BO16949.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:13:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG13042-RA 354 CG13042-PA 1..351 17..367 1755 100 Plus
CG13043-RA 447 CG13043-PA 107..183 117..193 175 81.8 Plus
CG13044-RA 468 CG13044-PA 110..198 123..211 175 79.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:13:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG13042-RA 571 CG13042-RA 66..416 17..367 1755 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:13:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16308001..16308340 367..28 1700 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:13:53 has no hits.

BO16949.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:33 Download gff for BO16949.complete
Subject Subject Range Query Range Percent Splice Strand
CG13042-RA 1..354 17..371 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:20:32 Download gff for BO16949.complete
Subject Subject Range Query Range Percent Splice Strand
CG13042-RA 1..354 17..371 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:43:10 Download gff for BO16949.complete
Subject Subject Range Query Range Percent Splice Strand
CG13042-RA 66..416 17..369 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:33 Download gff for BO16949.complete
Subject Subject Range Query Range Percent Splice Strand
CG13042-RA 1..354 17..371 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:48:13 Download gff for BO16949.complete
Subject Subject Range Query Range Percent Splice Strand
CG13042-RA 66..416 17..369 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:48:13 Download gff for BO16949.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16307999..16308342 23..369 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:43:10 Download gff for BO16949.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16301099..16301442 23..369 98   Minus

BO16949.pep Sequence

Translation from 16 to 385

> BO16949.pep
MYKLVVFFALLAVVAARPGYLESGPLLHSYAAPAIIHEPALAKVGAIIKT
VPSAVSHQSISQVHSSAHIIQPIVAPVVKTYAAPIIKTYAAPALHTTLLS
SPWAGHGWAGHGWAPSWASFLDH

BO16949.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG13042-PA 117 CG13042-PA 1..117 1..117 611 100 Plus
CG13043-PA 148 CG13043-PA 1..103 1..102 270 57.9 Plus
CG13044-PA 155 CG13044-PA 1..119 1..109 245 50 Plus
CG13063-PA 129 CG13063-PA 1..102 1..102 243 50 Plus
CG13041-PA 124 CG13041-PA 1..87 1..96 206 46.9 Plus