Clone BO16951 Report

Search the DGRC for BO16951

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:169
Well:51
Vector:pDNR-Dual
Associated Gene/TranscriptCG10674-RA
Protein status:BO16951.pep: validated full length
Sequenced Size:358

Clone Sequence Records

BO16951.3prime Sequence

356 bp (356 high quality bases) assembled on 2006-10-13

> BO16951.3prime
ATGGTCTAGAAAGCTTGCGGAAGCCCATGGTGGGGTCATGGCAGCGGGAT
TCTGGAGGTAGGACATCACCACCGCACTGACGCTCAACATAAAGGAGGAG
AGCACCTGTTTGGCATCGTCGCTGGCCCGAGAACTGGCGAAACTAATGCA
GGAGCAGTACAGCGCAAACCAGGCGCACCACTTGAGCTTCATCATCAGTC
CACACATGGAGAAAATCATGCCCAGAATGTTCATGTAATCCGGCATCATG
TCCTCGTTGGCGCCGCCGCTCTGGCCCTGGTTCTTGGGCGCCTTGTAGCG
GTTGATCTTCTCCTTGCGGCGCGGATCCACGGTCATGTTCATGTCGACTG
ATAACT

BO16951.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG10674-PA 327 CG10674-RA 1..324 342..19 1620 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:19:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG10674-RA 478 CG10674-RA 60..383 342..19 1620 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:19:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5135843..5136012 19..188 850 100 Plus
3L 28110227 3L 5136078..5136233 187..342 780 100 Plus
Blast to na_te.dros performed on 2015-02-10 16:19:34 has no hits.

BO16951.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:00:06 Download gff for BO16951.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10674-PA 1..327 18..342 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:12:44 Download gff for BO16951.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10674-RA 60..387 13..342 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:45:57 Download gff for BO16951.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10674-RA 60..387 13..342 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:45:57 Download gff for BO16951.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 5135839..5136010 13..186 98 <- Plus
3L 5136078..5136233 187..342 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:12:44 Download gff for BO16951.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5128939..5129110 13..186 98 <- Plus
arm_3L 5129178..5129333 187..342 100   Plus

BO16951.5prime Sequence

356 bp (356 high quality bases) assembled on 2006-10-13

> BO16951.5prime
GAAGTTATCAGTCGACATGAACATGACCGTGGATCCGCGCCGCAAGGAGA
AGATCAACCGCTACAAGGCGCCCAAGAACCAGGGCCAGAGCGGCGGCGCC
AACGAGGACATGATGCCGGATTACATGAACATTCTGGGCATGATTTTCTC
CATGTGTGGACTGATGATGAAGCTCAAGTGGTGCGCCTGGTTTGCGCTGT
ACTGCTCCTGCATTAGTTTCGCCAGTTCTCGGGCCAGCGACGATGCCAAA
CAGGTGCTCTCCTCCTTTATGTTGAGCGTCAGTGCGGTGGTGATGTCCTA
CCTCCAGAATCCCGCTGCCATGACCCCACCATGGGCTTCCGCAAGCTTTC
TAGACC

BO16951.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG10674-PA 327 CG10674-RA 1..324 17..340 1620 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:49:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG10674-RA 478 CG10674-RA 60..383 17..340 1620 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:49:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5135843..5136012 340..171 850 100 Minus
3L 28110227 3L 5136078..5136233 172..17 780 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:49:16 has no hits.

BO16951.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:00:07 Download gff for BO16951.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10674-PA 1..327 17..341 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:42:58 Download gff for BO16951.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10674-RA 60..387 17..346 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:00:50 Download gff for BO16951.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10674-RA 60..387 17..346 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:00:50 Download gff for BO16951.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 5135839..5136010 173..346 98 <- Minus
3L 5136078..5136233 17..172 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:42:58 Download gff for BO16951.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5128939..5129110 173..346 98 <- Minus
arm_3L 5129178..5129333 17..172 100   Minus

BO16951.complete Sequence

358 bp assembled on 2006-10-11

GenBank Submission: FJ633992

> BO16951.complete
GAAGTTATCAGTCGACATGAACATGACCGTGGATCCGCGCCGCAAGGAGA
AGATCAACCGCTACAAGGCGCCCAAGAACCAGGGCCAGAGCGGCGGCGCC
AACGAGGACATGATGCCGGATTACATGAACATTCTGGGCATGATTTTCTC
CATGTGTGGACTGATGATGAAGCTCAAGTGGTGCGCCTGGTTTGCGCTGT
ACTGCTCCTGCATTAGTTTCGCCAGTTCTCGGGCCAGCGACGATGCCAAA
CAGGTGCTCTCCTCCTTTATGTTGAGCGTCAGTGCGGTGGTGATGTCCTA
CCTCCAGAATCCCGCTGCCATGACCCCACCATGGGCTTCCGCAAGCTTTC
TAGACCAT

BO16951.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:21:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG10674-RA 327 CG10674-PA 1..324 17..340 1620 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:21:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG10674-RA 478 CG10674-RA 60..383 17..340 1620 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:21:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5135843..5136012 340..171 850 100 Minus
3L 28110227 3L 5136078..5136233 172..17 780 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:21:03 has no hits.

BO16951.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:01 Download gff for BO16951.complete
Subject Subject Range Query Range Percent Splice Strand
CG10674-RA 1..327 17..341 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:19:44 Download gff for BO16951.complete
Subject Subject Range Query Range Percent Splice Strand
CG10674-RA 1..327 17..341 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:47:09 Download gff for BO16951.complete
Subject Subject Range Query Range Percent Splice Strand
CG10674-RA 60..383 17..342 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:01 Download gff for BO16951.complete
Subject Subject Range Query Range Percent Splice Strand
CG10674-RA 1..327 17..341 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:51:42 Download gff for BO16951.complete
Subject Subject Range Query Range Percent Splice Strand
CG10674-RA 60..383 17..342 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:51:42 Download gff for BO16951.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5135839..5136010 173..342 98 <- Minus
3L 5136078..5136233 17..172 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:47:09 Download gff for BO16951.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5128939..5129110 173..342 98 <- Minus
arm_3L 5129178..5129333 17..172 100   Minus

BO16951.pep Sequence

Translation from 16 to 358

> BO16951.pep
MNMTVDPRRKEKINRYKAPKNQGQSGGANEDMMPDYMNILGMIFSMCGLM
MKLKWCAWFALYCSCISFASSRASDDAKQVLSSFMLSVSAVVMSYLQNPA
AMTPPWASASFLDH

BO16951.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG10674-PA 108 CG10674-PA 1..108 1..108 574 100 Plus