Clone Sequence Records
BO16951.3prime Sequence
356 bp (356 high quality bases) assembled on 2006-10-13
> BO16951.3prime
ATGGTCTAGAAAGCTTGCGGAAGCCCATGGTGGGGTCATGGCAGCGGGAT
TCTGGAGGTAGGACATCACCACCGCACTGACGCTCAACATAAAGGAGGAG
AGCACCTGTTTGGCATCGTCGCTGGCCCGAGAACTGGCGAAACTAATGCA
GGAGCAGTACAGCGCAAACCAGGCGCACCACTTGAGCTTCATCATCAGTC
CACACATGGAGAAAATCATGCCCAGAATGTTCATGTAATCCGGCATCATG
TCCTCGTTGGCGCCGCCGCTCTGGCCCTGGTTCTTGGGCGCCTTGTAGCG
GTTGATCTTCTCCTTGCGGCGCGGATCCACGGTCATGTTCATGTCGACTG
ATAACT
BO16951.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10674-PA | 327 | CG10674-RA | 1..324 | 342..19 | 1620 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:19:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10674-RA | 478 | CG10674-RA | 60..383 | 342..19 | 1620 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:19:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5135843..5136012 | 19..188 | 850 | 100 | Plus |
3L | 28110227 | 3L | 5136078..5136233 | 187..342 | 780 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:19:34 has no hits.
BO16951.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:00:06 Download gff for
BO16951.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10674-PA | 1..327 | 18..342 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:12:44 Download gff for
BO16951.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10674-RA | 60..387 | 13..342 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:45:57 Download gff for
BO16951.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10674-RA | 60..387 | 13..342 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:45:57 Download gff for
BO16951.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5135839..5136010 | 13..186 | 98 | <- | Plus |
3L | 5136078..5136233 | 187..342 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:12:44 Download gff for
BO16951.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5128939..5129110 | 13..186 | 98 | <- | Plus |
arm_3L | 5129178..5129333 | 187..342 | 100 | | Plus |
BO16951.5prime Sequence
356 bp (356 high quality bases) assembled on 2006-10-13
> BO16951.5prime
GAAGTTATCAGTCGACATGAACATGACCGTGGATCCGCGCCGCAAGGAGA
AGATCAACCGCTACAAGGCGCCCAAGAACCAGGGCCAGAGCGGCGGCGCC
AACGAGGACATGATGCCGGATTACATGAACATTCTGGGCATGATTTTCTC
CATGTGTGGACTGATGATGAAGCTCAAGTGGTGCGCCTGGTTTGCGCTGT
ACTGCTCCTGCATTAGTTTCGCCAGTTCTCGGGCCAGCGACGATGCCAAA
CAGGTGCTCTCCTCCTTTATGTTGAGCGTCAGTGCGGTGGTGATGTCCTA
CCTCCAGAATCCCGCTGCCATGACCCCACCATGGGCTTCCGCAAGCTTTC
TAGACC
BO16951.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10674-PA | 327 | CG10674-RA | 1..324 | 17..340 | 1620 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:49:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10674-RA | 478 | CG10674-RA | 60..383 | 17..340 | 1620 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:49:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5135843..5136012 | 340..171 | 850 | 100 | Minus |
3L | 28110227 | 3L | 5136078..5136233 | 172..17 | 780 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:49:16 has no hits.
BO16951.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:00:07 Download gff for
BO16951.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10674-PA | 1..327 | 17..341 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:42:58 Download gff for
BO16951.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10674-RA | 60..387 | 17..346 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:00:50 Download gff for
BO16951.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10674-RA | 60..387 | 17..346 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:00:50 Download gff for
BO16951.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5135839..5136010 | 173..346 | 98 | <- | Minus |
3L | 5136078..5136233 | 17..172 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:42:58 Download gff for
BO16951.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5128939..5129110 | 173..346 | 98 | <- | Minus |
arm_3L | 5129178..5129333 | 17..172 | 100 | | Minus |
BO16951.complete Sequence
358 bp assembled on 2006-10-11
GenBank Submission: FJ633992
> BO16951.complete
GAAGTTATCAGTCGACATGAACATGACCGTGGATCCGCGCCGCAAGGAGA
AGATCAACCGCTACAAGGCGCCCAAGAACCAGGGCCAGAGCGGCGGCGCC
AACGAGGACATGATGCCGGATTACATGAACATTCTGGGCATGATTTTCTC
CATGTGTGGACTGATGATGAAGCTCAAGTGGTGCGCCTGGTTTGCGCTGT
ACTGCTCCTGCATTAGTTTCGCCAGTTCTCGGGCCAGCGACGATGCCAAA
CAGGTGCTCTCCTCCTTTATGTTGAGCGTCAGTGCGGTGGTGATGTCCTA
CCTCCAGAATCCCGCTGCCATGACCCCACCATGGGCTTCCGCAAGCTTTC
TAGACCAT
BO16951.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:21:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10674-RA | 327 | CG10674-PA | 1..324 | 17..340 | 1620 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:21:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10674-RA | 478 | CG10674-RA | 60..383 | 17..340 | 1620 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:21:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5135843..5136012 | 340..171 | 850 | 100 | Minus |
3L | 28110227 | 3L | 5136078..5136233 | 172..17 | 780 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:21:03 has no hits.
BO16951.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:01 Download gff for
BO16951.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10674-RA | 1..327 | 17..341 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:19:44 Download gff for
BO16951.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10674-RA | 1..327 | 17..341 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:47:09 Download gff for
BO16951.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10674-RA | 60..383 | 17..342 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:01 Download gff for
BO16951.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10674-RA | 1..327 | 17..341 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:51:42 Download gff for
BO16951.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10674-RA | 60..383 | 17..342 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:51:42 Download gff for
BO16951.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5135839..5136010 | 173..342 | 98 | <- | Minus |
3L | 5136078..5136233 | 17..172 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:47:09 Download gff for
BO16951.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5128939..5129110 | 173..342 | 98 | <- | Minus |
arm_3L | 5129178..5129333 | 17..172 | 100 | | Minus |
BO16951.pep Sequence
Translation from 16 to 358
> BO16951.pep
MNMTVDPRRKEKINRYKAPKNQGQSGGANEDMMPDYMNILGMIFSMCGLM
MKLKWCAWFALYCSCISFASSRASDDAKQVLSSFMLSVSAVVMSYLQNPA
AMTPPWASASFLDH
BO16951.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10674-PA | 108 | CG10674-PA | 1..108 | 1..108 | 574 | 100 | Plus |