Clone Sequence Records
BO16953.3prime Sequence
370 bp (370 high quality bases) assembled on 2006-10-13
> BO16953.3prime
TAATGGTCTAGAAAGCTTGCAATCCGCATGGTAAGACGCCTTTGGGGCCT
CAGACGCTCCTTTTCCGCCCGATCCTTGCGCATCCGAAGGATTTCCTCGC
CGCGCAGCTCCTTTCGCCTTCCAGGAGATACATCTCTGTTGAGATCGATT
TTGGATTCAATCCTCGGCGAACGGCGACCTATCACAAAACTCGCGGTATC
GTTCGCGAACAACTTTTGCTGGCGCAATCGTACGCAACGTTTAGGTGTTT
CGGAGAAATCCTCGTTTCCAGGATCCCTCTTCTCGTCCCCTATTGTTAAC
ACTTCCTTGAACATATCCTCGACGGCACTGAAGTACAGCGTGGAATCGGA
GGACATGTCGACTGATAACT
BO16953.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:51:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13454-PA | 339 | CG13454-RA | 1..336 | 356..21 | 1680 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:34:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13454-RA | 524 | CG13454-RA | 31..366 | 356..21 | 1680 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:34:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15516691..15517026 | 21..356 | 1680 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 07:34:56 has no hits.
BO16953.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:00:09 Download gff for
BO16953.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13454-PA | 1..339 | 20..356 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:07:03 Download gff for
BO16953.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13454-RA | 19..366 | 21..366 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:21:52 Download gff for
BO16953.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13454-RA | 19..366 | 21..366 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:21:52 Download gff for
BO16953.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15516691..15517038 | 21..366 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:07:03 Download gff for
BO16953.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15509791..15510138 | 21..366 | 98 | | Plus |
BO16953.5prime Sequence
368 bp (368 high quality bases) assembled on 2006-10-13
> BO16953.5prime
NAAATTATCANTCCACATGTCCTCCGATTCCACGCTGTACTTCAGTGCCG
TCGAGGATATGTTCAAGGAAGTGTTAACAATAGGGGACGAGAAGAGGGAT
CCTGGAAACGAGGATTTCTCCGAAACACCTAAACGTTGCGTACGATTGCG
CCAGCAAAAGTTGTTCGCGAACGATACCGCGAGTTTTGTGATAGGTCGCC
GTTCGCCGAGGATTGAATCCAAAATCGATCTCAACAGAGATGTATCTCCT
GGAAGGCGAAAGGAGCTGCGCGGCGAGGAAATCCTTCGGATGCGCAAGGA
TCGGGCGGAAAAGGAGCGTCTGAGGCCCCAAAGGCGTCTTACCATGCGGA
TTGCAAGCTTTCTAGACC
BO16953.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:51:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13454-PA | 339 | CG13454-RA | 1..336 | 17..352 | 1680 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:44:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13454-RA | 524 | CG13454-RA | 31..366 | 17..352 | 1680 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:44:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15516691..15517026 | 352..17 | 1680 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:44:17 has no hits.
BO16953.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:00:10 Download gff for
BO16953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13454-PA | 1..339 | 17..353 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:32:16 Download gff for
BO16953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13454-RA | 19..366 | 7..352 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:13:16 Download gff for
BO16953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13454-RA | 19..366 | 7..352 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:13:16 Download gff for
BO16953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15516691..15517038 | 7..352 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:32:16 Download gff for
BO16953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15509791..15510138 | 7..352 | 98 | | Minus |
BO16953.complete Sequence
370 bp assembled on 2008-08-15
GenBank Submission: FJ633993
> BO16953.complete
GAAGTTATCAGTCGACATGTCCTCCGATTCCACGCTGTACTTCAGTGCCG
TCGAGGATATGTTCAAGGAAGTGTTAACAATAGGGGACGAGAAGAGGGAT
CCTGGAAACGAGGATTTCTCCGAAACACCTAAACGTTGCGTACGATTGCG
CCAGCAAAAGTTGTTCGCGAACGATACCGCGAGTTTTGTGATAGGTCGCC
GTTCGCCGAGGATTGAATCCAAAATCGATCTCAACAGAGATGTATCTCCT
GGAAGGCGAAAGGAGCTGCGCGGCGAGGAAATCCTTCGGATGCGCAAGGA
TCGGGCGGAAAAGGAGCGTCTGAGGCCCCAAAGGCGTCTTACCATGCGGA
TTGCAAGCTTTCTAGACCAT
BO16953.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:37:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13454-RA | 339 | CG13454-PA | 1..336 | 17..352 | 1680 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:37:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13454-RA | 524 | CG13454-RA | 31..366 | 17..352 | 1680 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:36:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15516691..15517026 | 352..17 | 1680 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:37:00 has no hits.
BO16953.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:35:42 Download gff for
BO16953.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13454-RA | 15..362 | 7..352 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:48:27 Download gff for
BO16953.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13454-RA | 31..366 | 17..354 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:00:17 Download gff for
BO16953.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13454-RA | 27..362 | 17..354 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:49:46 Download gff for
BO16953.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13454-RA | 31..366 | 17..354 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:49:46 Download gff for
BO16953.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15516689..15517026 | 17..354 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:48:27 Download gff for
BO16953.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15509789..15510126 | 17..354 | 99 | | Minus |
BO16953.pep Sequence
Translation from 16 to 370
> BO16953.pep
MSSDSTLYFSAVEDMFKEVLTIGDEKRDPGNEDFSETPKRCVRLRQQKLF
ANDTASFVIGRRSPRIESKIDLNRDVSPGRRKELRGEEILRMRKDRAEKE
RLRPQRRLTMRIASFLDH
BO16953.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:41:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13454-PA | 112 | CG13454-PA | 1..112 | 1..112 | 565 | 100 | Plus |
