Clone BO16956 Report

Search the DGRC for BO16956

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:169
Well:56
Vector:pDNR-Dual
Associated Gene/Transcriptpallidin-RC
Protein status:BO16956.pep: validated full length
Sequenced Size:394

Clone Sequence Records

BO16956.3prime Sequence

392 bp (392 high quality bases) assembled on 2006-10-13

> BO16956.3prime
ATGGTCTAGAAAGCTTGCCTGGCTGCCAATGAGCGACTCCTCGTGCTGTA
GCCTCTCGAGTTTCCGCTGGTAGTCACGCTGCTTGCAGGCCGCCACGTTA
GCGGCTCGTTTCTTTAACTCTTTGGTGCGCTGATAGACGCCCTGCATTTC
CTTCTTGATTTTTGTTAGCTTATCTTTGTATCGCTTTACATCGCTCATCA
TATCATTCAGCCTGGCCACTTCGCTGCAGTCCAGTTTATATTTCTCCTTG
GACAAATCGATGTATGTTTTGTTCTGCCTACCGATCAATTCCCTAAGCTG
GGTGCGCACATGGTTTAGTGGAGGCTCCGCTATTTGCAGGACGCCAGCGG
ACAACTGTAAAGCGGCTAGACTGGCCATGTCGACTGATAACT

BO16956.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG14133-PA 363 CG14133-RA 1..360 378..19 1800 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:10:33
Subject Length Description Subject Range Query Range Score Percent Strand
Pallidin-RB 952 CG14133-RB 207..567 379..19 1805 100 Minus
Sug-RF 3349 CG7334-RF 3210..3308 19..117 480 99 Plus
Sug-RE 3343 CG7334-RE 3204..3302 19..117 480 99 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:10:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11690016..11690114 19..117 480 99 Plus
3L 28110227 3L 11691040..11691135 284..379 480 100 Plus
3L 28110227 3L 11690226..11690313 112..199 440 100 Plus
3L 28110227 3L 11690897..11690981 199..283 425 100 Plus
Blast to na_te.dros performed on 2015-02-11 09:10:32 has no hits.

BO16956.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:00:12 Download gff for BO16956.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14133-PA 1..363 18..378 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:02:28 Download gff for BO16956.3prime
Subject Subject Range Query Range Percent Splice Strand
pallidin-RB 204..567 19..385 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:18:19 Download gff for BO16956.3prime
Subject Subject Range Query Range Percent Splice Strand
Pallidin-RB 204..567 19..385 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:18:19 Download gff for BO16956.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 11690016..11690108 19..111 100 <- Plus
3L 11690226..11690312 112..198 100 <- Plus
3L 11690897..11690981 199..283 100 <- Plus
3L 11691040..11691138 284..385 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:02:28 Download gff for BO16956.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11683116..11683208 19..111 100 <- Plus
arm_3L 11683326..11683412 112..198 100 <- Plus
arm_3L 11683997..11684081 199..283 100 <- Plus
arm_3L 11684140..11684238 284..385 97   Plus

BO16956.5prime Sequence

392 bp (392 high quality bases) assembled on 2006-10-13

> BO16956.5prime
GAAGTTATCAGTCGACATGGCCAGTCTAGCCGCTTTACAGTTGTCCGCTG
GCGTCCTGCAAATAGCGGAGCCTCCACTAAACCATGTGCGCACCCAGCTT
AGGGAATTGATCGGTAGGCAGAACAAAACATACATCGATTTGTCCAAGGA
GAAATATAAACTGGACTGCAGCGAAGTGGCCAGGCTGAATGATATGATGA
GCGATGTAAAGCGATACAAAGATAAGCTAACAAAAATCAAGAAGGAAATG
CAGGGCGTCTATCAGCGCACCAAAGAGTTAAAGAAACGAGCCGCTAACGT
GGCGGCCTGCAAGCAGCGTGACTACCAGCGGAAACTCGAGAGGCTACAGC
ACGAGGAGTCGCTCATTGGCAGCCAGGCAAGCTTTCTAGACC

BO16956.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG14133-PA 363 CG14133-RA 1..360 17..376 1800 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:10:36
Subject Length Description Subject Range Query Range Score Percent Strand
Pallidin-RB 952 CG14133-RB 207..567 16..376 1805 100 Plus
Sug-RF 3349 CG7334-RF 3210..3308 376..278 480 99 Minus
Sug-RE 3343 CG7334-RE 3204..3302 376..278 480 99 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:10:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11690016..11690114 376..278 480 99 Minus
3L 28110227 3L 11691040..11691135 111..16 480 100 Minus
3L 28110227 3L 11690226..11690313 283..196 440 100 Minus
3L 28110227 3L 11690897..11690981 196..112 425 100 Minus
Blast to na_te.dros performed on 2015-02-11 09:10:36 has no hits.

BO16956.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:00:13 Download gff for BO16956.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14133-PA 1..363 17..377 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:02:29 Download gff for BO16956.5prime
Subject Subject Range Query Range Percent Splice Strand
pallidin-RB 204..567 10..376 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:18:27 Download gff for BO16956.5prime
Subject Subject Range Query Range Percent Splice Strand
Pallidin-RB 204..567 10..376 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:18:27 Download gff for BO16956.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 11690016..11690108 284..376 100 <- Minus
3L 11690226..11690312 197..283 100 <- Minus
3L 11690897..11690981 112..196 100 <- Minus
3L 11691040..11691138 10..111 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:02:29 Download gff for BO16956.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11683116..11683208 284..376 100 <- Minus
arm_3L 11683326..11683412 197..283 100 <- Minus
arm_3L 11683997..11684081 112..196 100 <- Minus
arm_3L 11684140..11684238 10..111 97   Minus

BO16956.complete Sequence

394 bp assembled on 2006-10-11

GenBank Submission: FJ633994

> BO16956.complete
GAAGTTATCAGTCGACATGGCCAGTCTAGCCGCTTTACAGTTGTCCGCTG
GCGTCCTGCAAATAGCGGAGCCTCCACTAAACCATGTGCGCACCCAGCTT
AGGGAATTGATCGGTAGGCAGAACAAAACATACATCGATTTGTCCAAGGA
GAAATATAAACTGGACTGCAGCGAAGTGGCCAGGCTGAATGATATGATGA
GCGATGTAAAGCGATACAAAGATAAGCTAACAAAAATCAAGAAGGAAATG
CAGGGCGTCTATCAGCGCACCAAAGAGTTAAAGAAACGAGCCGCTAACGT
GGCGGCCTGCAAGCAGCGTGACTACCAGCGGAAACTCGAGAGGCTACAGC
ACGAGGAGTCGCTCATTGGCAGCCAGGCAAGCTTTCTAGACCAT

BO16956.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:29:50
Subject Length Description Subject Range Query Range Score Percent Strand
Pallidin-RB 504 CG14133-PB 141..501 16..376 1805 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:29:51
Subject Length Description Subject Range Query Range Score Percent Strand
Pallidin-RB 952 CG14133-RB 207..567 16..376 1805 100 Plus
Sug-RF 3349 CG7334-RF 3210..3308 376..278 480 99 Minus
Sug-RE 3343 CG7334-RE 3204..3302 376..278 480 99 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:29:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11690016..11690114 376..278 480 99 Minus
3L 28110227 3L 11691040..11691135 111..16 480 100 Minus
3L 28110227 3L 11690226..11690313 283..196 440 100 Minus
3L 28110227 3L 11690897..11690981 196..112 425 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:29:49 has no hits.

BO16956.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:41 Download gff for BO16956.complete
Subject Subject Range Query Range Percent Splice Strand
CG14133-RA 1..363 17..377 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:20:43 Download gff for BO16956.complete
Subject Subject Range Query Range Percent Splice Strand
CG14133-RB 204..567 10..376 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:11:05 Download gff for BO16956.complete
Subject Subject Range Query Range Percent Splice Strand
pallidin-RB 208..567 17..378 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:41 Download gff for BO16956.complete
Subject Subject Range Query Range Percent Splice Strand
CG14133-RA 1..363 17..377 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:20:18 Download gff for BO16956.complete
Subject Subject Range Query Range Percent Splice Strand
Pallidin-RB 208..567 17..378 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:20:18 Download gff for BO16956.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11690014..11690108 284..378 97 <- Minus
3L 11690226..11690312 197..283 100 <- Minus
3L 11690897..11690981 112..196 100 <- Minus
3L 11691040..11691134 17..111 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:11:05 Download gff for BO16956.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11683114..11683208 284..378 97 <- Minus
arm_3L 11683326..11683412 197..283 100 <- Minus
arm_3L 11683997..11684081 112..196 100 <- Minus
arm_3L 11684140..11684234 17..111 100   Minus

BO16956.pep Sequence

Translation from 16 to 394

> BO16956.pep
MASLAALQLSAGVLQIAEPPLNHVRTQLRELIGRQNKTYIDLSKEKYKLD
CSEVARLNDMMSDVKRYKDKLTKIKKEMQGVYQRTKELKKRAANVAACKQ
RDYQRKLERLQHEESLIGSQASFLDH

BO16956.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:10
Subject Length Description Subject Range Query Range Score Percent Strand
Pallidin-PB 167 CG14133-PB 48..167 1..120 599 100 Plus