Clone Sequence Records
BO16956.3prime Sequence
392 bp (392 high quality bases) assembled on 2006-10-13
> BO16956.3prime
ATGGTCTAGAAAGCTTGCCTGGCTGCCAATGAGCGACTCCTCGTGCTGTA
GCCTCTCGAGTTTCCGCTGGTAGTCACGCTGCTTGCAGGCCGCCACGTTA
GCGGCTCGTTTCTTTAACTCTTTGGTGCGCTGATAGACGCCCTGCATTTC
CTTCTTGATTTTTGTTAGCTTATCTTTGTATCGCTTTACATCGCTCATCA
TATCATTCAGCCTGGCCACTTCGCTGCAGTCCAGTTTATATTTCTCCTTG
GACAAATCGATGTATGTTTTGTTCTGCCTACCGATCAATTCCCTAAGCTG
GGTGCGCACATGGTTTAGTGGAGGCTCCGCTATTTGCAGGACGCCAGCGG
ACAACTGTAAAGCGGCTAGACTGGCCATGTCGACTGATAACT
BO16956.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14133-PA | 363 | CG14133-RA | 1..360 | 378..19 | 1800 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:10:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pallidin-RB | 952 | CG14133-RB | 207..567 | 379..19 | 1805 | 100 | Minus |
Sug-RF | 3349 | CG7334-RF | 3210..3308 | 19..117 | 480 | 99 | Plus |
Sug-RE | 3343 | CG7334-RE | 3204..3302 | 19..117 | 480 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:10:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11690016..11690114 | 19..117 | 480 | 99 | Plus |
3L | 28110227 | 3L | 11691040..11691135 | 284..379 | 480 | 100 | Plus |
3L | 28110227 | 3L | 11690226..11690313 | 112..199 | 440 | 100 | Plus |
3L | 28110227 | 3L | 11690897..11690981 | 199..283 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:10:32 has no hits.
BO16956.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:00:12 Download gff for
BO16956.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14133-PA | 1..363 | 18..378 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:02:28 Download gff for
BO16956.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pallidin-RB | 204..567 | 19..385 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:18:19 Download gff for
BO16956.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pallidin-RB | 204..567 | 19..385 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:18:19 Download gff for
BO16956.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11690016..11690108 | 19..111 | 100 | <- | Plus |
3L | 11690226..11690312 | 112..198 | 100 | <- | Plus |
3L | 11690897..11690981 | 199..283 | 100 | <- | Plus |
3L | 11691040..11691138 | 284..385 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:02:28 Download gff for
BO16956.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11683116..11683208 | 19..111 | 100 | <- | Plus |
arm_3L | 11683326..11683412 | 112..198 | 100 | <- | Plus |
arm_3L | 11683997..11684081 | 199..283 | 100 | <- | Plus |
arm_3L | 11684140..11684238 | 284..385 | 97 | | Plus |
BO16956.5prime Sequence
392 bp (392 high quality bases) assembled on 2006-10-13
> BO16956.5prime
GAAGTTATCAGTCGACATGGCCAGTCTAGCCGCTTTACAGTTGTCCGCTG
GCGTCCTGCAAATAGCGGAGCCTCCACTAAACCATGTGCGCACCCAGCTT
AGGGAATTGATCGGTAGGCAGAACAAAACATACATCGATTTGTCCAAGGA
GAAATATAAACTGGACTGCAGCGAAGTGGCCAGGCTGAATGATATGATGA
GCGATGTAAAGCGATACAAAGATAAGCTAACAAAAATCAAGAAGGAAATG
CAGGGCGTCTATCAGCGCACCAAAGAGTTAAAGAAACGAGCCGCTAACGT
GGCGGCCTGCAAGCAGCGTGACTACCAGCGGAAACTCGAGAGGCTACAGC
ACGAGGAGTCGCTCATTGGCAGCCAGGCAAGCTTTCTAGACC
BO16956.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14133-PA | 363 | CG14133-RA | 1..360 | 17..376 | 1800 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:10:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pallidin-RB | 952 | CG14133-RB | 207..567 | 16..376 | 1805 | 100 | Plus |
Sug-RF | 3349 | CG7334-RF | 3210..3308 | 376..278 | 480 | 99 | Minus |
Sug-RE | 3343 | CG7334-RE | 3204..3302 | 376..278 | 480 | 99 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:10:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11690016..11690114 | 376..278 | 480 | 99 | Minus |
3L | 28110227 | 3L | 11691040..11691135 | 111..16 | 480 | 100 | Minus |
3L | 28110227 | 3L | 11690226..11690313 | 283..196 | 440 | 100 | Minus |
3L | 28110227 | 3L | 11690897..11690981 | 196..112 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:10:36 has no hits.
BO16956.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:00:13 Download gff for
BO16956.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14133-PA | 1..363 | 17..377 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:02:29 Download gff for
BO16956.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pallidin-RB | 204..567 | 10..376 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:18:27 Download gff for
BO16956.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pallidin-RB | 204..567 | 10..376 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:18:27 Download gff for
BO16956.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11690016..11690108 | 284..376 | 100 | <- | Minus |
3L | 11690226..11690312 | 197..283 | 100 | <- | Minus |
3L | 11690897..11690981 | 112..196 | 100 | <- | Minus |
3L | 11691040..11691138 | 10..111 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:02:29 Download gff for
BO16956.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11683116..11683208 | 284..376 | 100 | <- | Minus |
arm_3L | 11683326..11683412 | 197..283 | 100 | <- | Minus |
arm_3L | 11683997..11684081 | 112..196 | 100 | <- | Minus |
arm_3L | 11684140..11684238 | 10..111 | 97 | | Minus |
BO16956.complete Sequence
394 bp assembled on 2006-10-11
GenBank Submission: FJ633994
> BO16956.complete
GAAGTTATCAGTCGACATGGCCAGTCTAGCCGCTTTACAGTTGTCCGCTG
GCGTCCTGCAAATAGCGGAGCCTCCACTAAACCATGTGCGCACCCAGCTT
AGGGAATTGATCGGTAGGCAGAACAAAACATACATCGATTTGTCCAAGGA
GAAATATAAACTGGACTGCAGCGAAGTGGCCAGGCTGAATGATATGATGA
GCGATGTAAAGCGATACAAAGATAAGCTAACAAAAATCAAGAAGGAAATG
CAGGGCGTCTATCAGCGCACCAAAGAGTTAAAGAAACGAGCCGCTAACGT
GGCGGCCTGCAAGCAGCGTGACTACCAGCGGAAACTCGAGAGGCTACAGC
ACGAGGAGTCGCTCATTGGCAGCCAGGCAAGCTTTCTAGACCAT
BO16956.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:29:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pallidin-RB | 504 | CG14133-PB | 141..501 | 16..376 | 1805 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:29:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pallidin-RB | 952 | CG14133-RB | 207..567 | 16..376 | 1805 | 100 | Plus |
Sug-RF | 3349 | CG7334-RF | 3210..3308 | 376..278 | 480 | 99 | Minus |
Sug-RE | 3343 | CG7334-RE | 3204..3302 | 376..278 | 480 | 99 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:29:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11690016..11690114 | 376..278 | 480 | 99 | Minus |
3L | 28110227 | 3L | 11691040..11691135 | 111..16 | 480 | 100 | Minus |
3L | 28110227 | 3L | 11690226..11690313 | 283..196 | 440 | 100 | Minus |
3L | 28110227 | 3L | 11690897..11690981 | 196..112 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:29:49 has no hits.
BO16956.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:41 Download gff for
BO16956.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14133-RA | 1..363 | 17..377 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:20:43 Download gff for
BO16956.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14133-RB | 204..567 | 10..376 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:11:05 Download gff for
BO16956.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pallidin-RB | 208..567 | 17..378 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:41 Download gff for
BO16956.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14133-RA | 1..363 | 17..377 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:20:18 Download gff for
BO16956.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pallidin-RB | 208..567 | 17..378 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:20:18 Download gff for
BO16956.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11690014..11690108 | 284..378 | 97 | <- | Minus |
3L | 11690226..11690312 | 197..283 | 100 | <- | Minus |
3L | 11690897..11690981 | 112..196 | 100 | <- | Minus |
3L | 11691040..11691134 | 17..111 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:11:05 Download gff for
BO16956.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11683114..11683208 | 284..378 | 97 | <- | Minus |
arm_3L | 11683326..11683412 | 197..283 | 100 | <- | Minus |
arm_3L | 11683997..11684081 | 112..196 | 100 | <- | Minus |
arm_3L | 11684140..11684234 | 17..111 | 100 | | Minus |
BO16956.pep Sequence
Translation from 16 to 394
> BO16956.pep
MASLAALQLSAGVLQIAEPPLNHVRTQLRELIGRQNKTYIDLSKEKYKLD
CSEVARLNDMMSDVKRYKDKLTKIKKEMQGVYQRTKELKKRAANVAACKQ
RDYQRKLERLQHEESLIGSQASFLDH
BO16956.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pallidin-PB | 167 | CG14133-PB | 48..167 | 1..120 | 599 | 100 | Plus |