Clone Sequence Records
BO16957.3prime Sequence
347 bp (347 high quality bases) assembled on 2006-10-13
> BO16957.3prime
ATGGTCTAGAAAGCTTGCGTCCATGATGATGTTGACTATGGGTATGTGCA
TCAGCTTAACGACGAATCCAATCAAGCCCATGATAAGGAATCCTACGCCA
ATGCCAATGCTGATACGCTGGAACTCCCGACGATCTGGTTTTGTGCAGCG
CTTGTAGAACCGCAACGAGTTCTTATAGAAATCCTTGGACGGAACCATTA
AGATCAGCAGATCCTTAATCTGGCATTTAATGCGTTCCACAGACTTGCAC
TTCAAATCGGGTAAGAATTTGCGGACACTCCTCTTGGCACATTTGGCCCT
GTATCTGCGGCGACGAGAAAGTAGTTGCTCCATGTCGACTGATAACT
BO16957.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13426-PA | 318 | CG13426-RA | 1..315 | 333..19 | 1575 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:43:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13426-RA | 418 | CG13426-RA | 58..372 | 333..19 | 1575 | 100 | Minus |
CG8860-RA | 420 | CG8860-RA | 176..308 | 153..21 | 200 | 76.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:43:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20512743..20513006 | 19..282 | 1320 | 100 | Plus |
2R | 25286936 | 2R | 20513059..20513112 | 280..333 | 270 | 100 | Plus |
2R | 25286936 | 2R | 12179595..12179727 | 21..153 | 200 | 76.7 | Plus |
Blast to na_te.dros performed on 2015-02-03 06:43:11 has no hits.
BO16957.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:00:13 Download gff for
BO16957.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13426-PA | 1..318 | 16..333 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:30:58 Download gff for
BO16957.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13426-RA | 58..372 | 19..333 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:38:53 Download gff for
BO16957.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13426-RA | 58..372 | 19..333 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:38:53 Download gff for
BO16957.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20513060..20513112 | 281..333 | 100 | <- | Plus |
2R | 20512743..20513004 | 19..280 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:30:58 Download gff for
BO16957.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16400248..16400509 | 19..280 | 100 | <- | Plus |
arm_2R | 16400565..16400617 | 281..333 | 100 | <- | Plus |
BO16957.5prime Sequence
347 bp (347 high quality bases) assembled on 2006-10-13
> BO16957.5prime
GAAGTTATCAGTCGACATGGAGCAACTACTTTCTCGTCGCCGCAGATACA
GGGCCAAATGTGCCAAGAGGAGTGTCCGCAAATTCTTACCCGATTTGAAG
TGCAAGTCTGTGGAACGCATTAAATGCCAGATTAAGGATCTGCTGATCTT
AATGGTTCCGTCCAAGGATTTCTATAAGAACTCGTTGCGGTTCTACAAGC
GCTGCACAAAACCAGATCGTCGGGAGTTCCAGCGTATCAGCATTGGCATT
GGCGTAGGATTCCTTATCATGGGCTTGATTGGATTCGTCGTTAAGCTGAT
GCACATACCCATAGTCAACATCATCATGGACGCAAGCTTTCTAGACC
BO16957.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13426-PA | 318 | CG13426-RA | 1..315 | 17..331 | 1575 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:48:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13426-RA | 418 | CG13426-RA | 58..372 | 17..331 | 1575 | 100 | Plus |
CG8860-RA | 420 | CG8860-RA | 176..308 | 197..329 | 200 | 76.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:48:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20512743..20513006 | 331..68 | 1320 | 100 | Minus |
2R | 25286936 | 2R | 20513059..20513112 | 70..17 | 270 | 100 | Minus |
2R | 25286936 | 2R | 12179595..12179727 | 329..197 | 200 | 76.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:48:20 has no hits.
BO16957.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:00:14 Download gff for
BO16957.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13426-PA | 1..318 | 17..334 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:42:40 Download gff for
BO16957.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13426-RA | 58..372 | 17..331 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:49:42 Download gff for
BO16957.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13426-RA | 58..372 | 17..331 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:49:42 Download gff for
BO16957.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20512743..20513004 | 70..331 | 100 | <- | Minus |
2R | 20513060..20513112 | 17..69 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:42:40 Download gff for
BO16957.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16400248..16400509 | 70..331 | 100 | <- | Minus |
arm_2R | 16400565..16400617 | 17..69 | 100 | <- | Minus |
BO16957.complete Sequence
349 bp assembled on 2006-10-11
GenBank Submission: FJ633995
> BO16957.complete
GAAGTTATCAGTCGACATGGAGCAACTACTTTCTCGTCGCCGCAGATACA
GGGCCAAATGTGCCAAGAGGAGTGTCCGCAAATTCTTACCCGATTTGAAG
TGCAAGTCTGTGGAACGCATTAAATGCCAGATTAAGGATCTGCTGATCTT
AATGGTTCCGTCCAAGGATTTCTATAAGAACTCGTTGCGGTTCTACAAGC
GCTGCACAAAACCAGATCGTCGGGAGTTCCAGCGTATCAGCATTGGCATT
GGCGTAGGATTCCTTATCATGGGCTTGATTGGATTCGTCGTTAAGCTGAT
GCACATACCCATAGTCAACATCATCATGGACGCAAGCTTTCTAGACCAT
BO16957.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:41:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13426-RA | 318 | CG13426-PA | 1..315 | 17..331 | 1575 | 100 | Plus |
CG8860-RA | 207 | CG8860-PA | 67..199 | 197..329 | 200 | 76.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:41:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13426-RA | 418 | CG13426-RA | 58..372 | 17..331 | 1575 | 100 | Plus |
CG8860-RA | 420 | CG8860-RA | 176..308 | 197..329 | 200 | 76.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:41:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20512743..20513006 | 331..68 | 1320 | 100 | Minus |
2R | 25286936 | 2R | 20513059..20513112 | 70..17 | 270 | 100 | Minus |
2R | 25286936 | 2R | 12179595..12179727 | 329..197 | 200 | 76.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:41:35 has no hits.
BO16957.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:09 Download gff for
BO16957.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13426-RA | 1..318 | 17..334 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:19:53 Download gff for
BO16957.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13426-RA | 58..372 | 17..331 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:33:12 Download gff for
BO16957.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13426-RA | 58..372 | 17..333 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:09 Download gff for
BO16957.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13426-RA | 58..372 | 17..331 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:24:48 Download gff for
BO16957.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13426-RA | 58..372 | 17..333 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:24:48 Download gff for
BO16957.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20512740..20513004 | 70..333 | 99 | <- | Minus |
2R | 20513060..20513112 | 17..69 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:33:12 Download gff for
BO16957.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16400245..16400509 | 70..333 | 99 | <- | Minus |
arm_2R | 16400565..16400617 | 17..69 | 100 | | Minus |
BO16957.pep Sequence
Translation from 16 to 349
> BO16957.pep
MEQLLSRRRRYRAKCAKRSVRKFLPDLKCKSVERIKCQIKDLLILMVPSK
DFYKNSLRFYKRCTKPDRREFQRISIGIGVGFLIMGLIGFVVKLMHIPIV
NIIMDASFLDH
BO16957.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13426-PA | 105 | CG13426-PA | 1..105 | 1..105 | 538 | 100 | Plus |
Sec61gamma-PC | 68 | CG14214-PC | 10..66 | 48..104 | 196 | 64.9 | Plus |
Sec61gamma-PB | 68 | CG14214-PB | 10..66 | 48..104 | 196 | 64.9 | Plus |
Sec61gamma-PA | 68 | CG14214-PA | 10..66 | 48..104 | 196 | 64.9 | Plus |
CG8860-PA | 68 | CG8860-PA | 10..66 | 48..104 | 196 | 64.9 | Plus |