Clone Sequence Records
BO16960.3prime Sequence
356 bp (356 high quality bases) assembled on 2006-10-13
> BO16960.3prime
ATGGTCTAGAAAGCTTGCCAGCTCCTCGTGGCGCGAAGGGAACTTCTTGA
GTATGGCATGGTAGAGACTGTAGAAGGCGTACACCGAAACCGTGATGATC
ACCAGCAGAGCTCCGCCGAACGCGATGCTCAGGAAGTTTCCATCGATGAT
GCCCGCCGAGCGGTGGCGCTTGGTGGAGAATATCTCCTCCGTGGTCGCCG
GGTTGTTTTGCTGCTGGGACGTCCGCTCGGCCATCAGCCGCTTCATGGTG
CTCAGCCGCTCCCGCAGAACTTCCACGGACTCGGTGTCCAGGTCAGAGGT
TCCTGTCGACTGGGATGCGGAAGCACTGGGATAGGTAGACATGTCGACTG
ATAACT
BO16960.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14312-PA | 327 | CG14312-RA | 1..324 | 342..19 | 1620 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:54:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14312-RA | 494 | CG14312-RA | 75..398 | 342..19 | 1620 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:54:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18283074..18283359 | 19..304 | 1430 | 100 | Plus |
3R | 32079331 | 3R | 18283414..18283454 | 302..342 | 205 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:54:44 has no hits.
BO16960.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:00:17 Download gff for
BO16960.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14312-PA | 1..327 | 15..342 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:21:07 Download gff for
BO16960.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14312-RA | 80..406 | 15..342 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:05:43 Download gff for
BO16960.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14312-RA | 75..401 | 15..342 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:05:43 Download gff for
BO16960.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18283070..18283357 | 15..302 | 99 | <- | Plus |
3R | 18283415..18283454 | 303..342 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:21:07 Download gff for
BO16960.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14108792..14109079 | 15..302 | 99 | <- | Plus |
arm_3R | 14109137..14109176 | 303..342 | 100 | | Plus |
BO16960.5prime Sequence
356 bp (356 high quality bases) assembled on 2006-10-13
> BO16960.5prime
GAAGTTATCAGTCGACATGTCTACCTATCCCAGTGCTTCCGCATCCCAGT
CGACAGGAACCTCTGACCTGGACACCGAGTCCGTGGAAGTTCTGCGGGAG
CGGCTGAGCACCATGAAGCGGCTGATGGCCGAGCGGACGTCCCAGCAGCA
AAACAACCCGGCGACCACGGAGGAGATATTCTCCACCAAGCGCCACCGCT
CGGCGGGCATCATCGATGGAAACTTCCTGAGCATCGCGTTCGGCGGAGCT
CTGCTGGTGATCATCACGGTTTCGGTGTACGCCTTCTACAGTCTCTACCA
TGCCATACTCAAGAAGTTCCCTTCGCGCCACGAGGAGCTGGCAAGCTTTC
TAGACC
BO16960.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14312-PA | 327 | CG14312-RA | 1..324 | 17..340 | 1620 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:36:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14312-RA | 494 | CG14312-RA | 75..398 | 17..340 | 1620 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:36:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18283074..18283359 | 340..55 | 1430 | 100 | Minus |
3R | 32079331 | 3R | 18283414..18283454 | 57..17 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:36:20 has no hits.
BO16960.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:00:19 Download gff for
BO16960.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14312-PA | 1..327 | 17..344 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:23:22 Download gff for
BO16960.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14312-RA | 80..406 | 17..344 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:15:57 Download gff for
BO16960.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14312-RA | 75..401 | 17..344 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:15:57 Download gff for
BO16960.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18283070..18283357 | 57..344 | 99 | <- | Minus |
3R | 18283415..18283454 | 17..56 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:23:22 Download gff for
BO16960.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14109137..14109176 | 17..56 | 100 | | Minus |
arm_3R | 14108792..14109079 | 57..344 | 99 | <- | Minus |
BO16960.complete Sequence
358 bp assembled on 2006-10-11
GenBank Submission: FJ633996
> BO16960.complete
GAAGTTATCAGTCGACATGTCTACCTATCCCAGTGCTTCCGCATCCCAGT
CGACAGGAACCTCTGACCTGGACACCGAGTCCGTGGAAGTTCTGCGGGAG
CGGCTGAGCACCATGAAGCGGCTGATGGCCGAGCGGACGTCCCAGCAGCA
AAACAACCCGGCGACCACGGAGGAGATATTCTCCACCAAGCGCCACCGCT
CGGCGGGCATCATCGATGGAAACTTCCTGAGCATCGCGTTCGGCGGAGCT
CTGCTGGTGATCATCACGGTTTCGGTGTACGCCTTCTACAGTCTCTACCA
TGCCATACTCAAGAAGTTCCCTTCGCGCCACGAGGAGCTGGCAAGCTTTC
TAGACCAT
BO16960.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:09:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14312-RA | 327 | CG14312-PA | 1..324 | 17..340 | 1620 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:09:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14312-RA | 494 | CG14312-RA | 75..398 | 17..340 | 1620 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:09:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18283074..18283359 | 340..55 | 1430 | 100 | Minus |
3R | 32079331 | 3R | 18283414..18283454 | 57..17 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:09:37 has no hits.
BO16960.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:17 Download gff for
BO16960.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14312-RA | 1..327 | 17..344 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:20:07 Download gff for
BO16960.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14312-RA | 1..327 | 17..344 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:46:37 Download gff for
BO16960.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14312-RA | 80..403 | 17..342 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:18 Download gff for
BO16960.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14312-RA | 1..327 | 17..344 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:15:26 Download gff for
BO16960.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14312-RA | 75..398 | 17..342 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:15:26 Download gff for
BO16960.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18283072..18283357 | 57..342 | 99 | <- | Minus |
3R | 18283415..18283454 | 17..56 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:46:37 Download gff for
BO16960.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14108794..14109079 | 57..342 | 99 | <- | Minus |
arm_3R | 14109137..14109176 | 17..56 | 100 | | Minus |
BO16960.pep Sequence
Translation from 16 to 358
> BO16960.pep
MSTYPSASASQSTGTSDLDTESVEVLRERLSTMKRLMAERTSQQQNNPAT
TEEIFSTKRHRSAGIIDGNFLSIAFGGALLVIITVSVYAFYSLYHAILKK
FPSRHEELASFLDH
BO16960.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14312-PA | 108 | CG14312-PA | 1..108 | 1..108 | 533 | 100 | Plus |