Clone BO16960 Report

Search the DGRC for BO16960

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:169
Well:60
Vector:pDNR-Dual
Associated Gene/TranscriptCG14312-RA
Protein status:BO16960.pep: validated full length
Sequenced Size:358

Clone Sequence Records

BO16960.3prime Sequence

356 bp (356 high quality bases) assembled on 2006-10-13

> BO16960.3prime
ATGGTCTAGAAAGCTTGCCAGCTCCTCGTGGCGCGAAGGGAACTTCTTGA
GTATGGCATGGTAGAGACTGTAGAAGGCGTACACCGAAACCGTGATGATC
ACCAGCAGAGCTCCGCCGAACGCGATGCTCAGGAAGTTTCCATCGATGAT
GCCCGCCGAGCGGTGGCGCTTGGTGGAGAATATCTCCTCCGTGGTCGCCG
GGTTGTTTTGCTGCTGGGACGTCCGCTCGGCCATCAGCCGCTTCATGGTG
CTCAGCCGCTCCCGCAGAACTTCCACGGACTCGGTGTCCAGGTCAGAGGT
TCCTGTCGACTGGGATGCGGAAGCACTGGGATAGGTAGACATGTCGACTG
ATAACT

BO16960.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG14312-PA 327 CG14312-RA 1..324 342..19 1620 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:54:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG14312-RA 494 CG14312-RA 75..398 342..19 1620 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:54:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18283074..18283359 19..304 1430 100 Plus
3R 32079331 3R 18283414..18283454 302..342 205 100 Plus
Blast to na_te.dros performed on 2015-02-10 16:54:44 has no hits.

BO16960.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:00:17 Download gff for BO16960.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14312-PA 1..327 15..342 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:21:07 Download gff for BO16960.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14312-RA 80..406 15..342 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:05:43 Download gff for BO16960.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14312-RA 75..401 15..342 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:05:43 Download gff for BO16960.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 18283070..18283357 15..302 99 <- Plus
3R 18283415..18283454 303..342 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:21:07 Download gff for BO16960.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14108792..14109079 15..302 99 <- Plus
arm_3R 14109137..14109176 303..342 100   Plus

BO16960.5prime Sequence

356 bp (356 high quality bases) assembled on 2006-10-13

> BO16960.5prime
GAAGTTATCAGTCGACATGTCTACCTATCCCAGTGCTTCCGCATCCCAGT
CGACAGGAACCTCTGACCTGGACACCGAGTCCGTGGAAGTTCTGCGGGAG
CGGCTGAGCACCATGAAGCGGCTGATGGCCGAGCGGACGTCCCAGCAGCA
AAACAACCCGGCGACCACGGAGGAGATATTCTCCACCAAGCGCCACCGCT
CGGCGGGCATCATCGATGGAAACTTCCTGAGCATCGCGTTCGGCGGAGCT
CTGCTGGTGATCATCACGGTTTCGGTGTACGCCTTCTACAGTCTCTACCA
TGCCATACTCAAGAAGTTCCCTTCGCGCCACGAGGAGCTGGCAAGCTTTC
TAGACC

BO16960.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG14312-PA 327 CG14312-RA 1..324 17..340 1620 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:36:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG14312-RA 494 CG14312-RA 75..398 17..340 1620 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:36:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18283074..18283359 340..55 1430 100 Minus
3R 32079331 3R 18283414..18283454 57..17 205 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:36:20 has no hits.

BO16960.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:00:19 Download gff for BO16960.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14312-PA 1..327 17..344 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:23:22 Download gff for BO16960.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14312-RA 80..406 17..344 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:15:57 Download gff for BO16960.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14312-RA 75..401 17..344 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:15:57 Download gff for BO16960.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 18283070..18283357 57..344 99 <- Minus
3R 18283415..18283454 17..56 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:23:22 Download gff for BO16960.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14109137..14109176 17..56 100   Minus
arm_3R 14108792..14109079 57..344 99 <- Minus

BO16960.complete Sequence

358 bp assembled on 2006-10-11

GenBank Submission: FJ633996

> BO16960.complete
GAAGTTATCAGTCGACATGTCTACCTATCCCAGTGCTTCCGCATCCCAGT
CGACAGGAACCTCTGACCTGGACACCGAGTCCGTGGAAGTTCTGCGGGAG
CGGCTGAGCACCATGAAGCGGCTGATGGCCGAGCGGACGTCCCAGCAGCA
AAACAACCCGGCGACCACGGAGGAGATATTCTCCACCAAGCGCCACCGCT
CGGCGGGCATCATCGATGGAAACTTCCTGAGCATCGCGTTCGGCGGAGCT
CTGCTGGTGATCATCACGGTTTCGGTGTACGCCTTCTACAGTCTCTACCA
TGCCATACTCAAGAAGTTCCCTTCGCGCCACGAGGAGCTGGCAAGCTTTC
TAGACCAT

BO16960.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:09:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG14312-RA 327 CG14312-PA 1..324 17..340 1620 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:09:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG14312-RA 494 CG14312-RA 75..398 17..340 1620 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:09:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18283074..18283359 340..55 1430 100 Minus
3R 32079331 3R 18283414..18283454 57..17 205 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:09:37 has no hits.

BO16960.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:17 Download gff for BO16960.complete
Subject Subject Range Query Range Percent Splice Strand
CG14312-RA 1..327 17..344 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:20:07 Download gff for BO16960.complete
Subject Subject Range Query Range Percent Splice Strand
CG14312-RA 1..327 17..344 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:46:37 Download gff for BO16960.complete
Subject Subject Range Query Range Percent Splice Strand
CG14312-RA 80..403 17..342 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:18 Download gff for BO16960.complete
Subject Subject Range Query Range Percent Splice Strand
CG14312-RA 1..327 17..344 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:15:26 Download gff for BO16960.complete
Subject Subject Range Query Range Percent Splice Strand
CG14312-RA 75..398 17..342 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:15:26 Download gff for BO16960.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18283072..18283357 57..342 99 <- Minus
3R 18283415..18283454 17..56 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:46:37 Download gff for BO16960.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14108794..14109079 57..342 99 <- Minus
arm_3R 14109137..14109176 17..56 100   Minus

BO16960.pep Sequence

Translation from 16 to 358

> BO16960.pep
MSTYPSASASQSTGTSDLDTESVEVLRERLSTMKRLMAERTSQQQNNPAT
TEEIFSTKRHRSAGIIDGNFLSIAFGGALLVIITVSVYAFYSLYHAILKK
FPSRHEELASFLDH

BO16960.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG14312-PA 108 CG14312-PA 1..108 1..108 533 100 Plus