Clone Sequence Records
BO16961.3prime Sequence
428 bp (428 high quality bases) assembled on 2006-10-13
> BO16961.3prime
ATGGTCTAGAAAGCTTGCGCGTCGGGCGCCATTGTGGCGCTGTATCATGA
TCCAGGTGCGACTATAGGCGCATATCCGGAATAGTCGGCTGAGTTGCATG
ATGCCCTGGCATGGGATGCTCCACGTATAGGTGGTCGTGTTGAGCAATAC
GATCCAGATGGTCAGGAAGATCTGGAGGGCTTTCCGTGTGCGAAACCTCA
GCGATGAAGCGATACCATTTGCTGGCCACGGTGGGTATACCCACCGGATG
ACCATGCAGAGGAATAGAAATTGAAGGACCAGAACTTCCTGGATCAAAAG
CATCAGCCCCAGCAAATTCTCCAGGTAAACGTACACCGCATACAGTGCAA
TTCTTAGCGGAAAGCTCAGCATCAGTCGGTAGAACACAAGTCCATTGTCC
AGATGCTTGACCATGTCGACTGATAACT
BO16961.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14370-PA | 399 | CG14370-RA | 1..396 | 414..19 | 1980 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:11:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14370-RA | 729 | CG14370-RA | 191..586 | 414..19 | 1980 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:11:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13588187..13588582 | 414..19 | 1980 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:11:13 has no hits.
BO16961.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:00:19 Download gff for
BO16961.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14370-PA | 1..399 | 16..414 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:45:27 Download gff for
BO16961.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14370-RA | 185..595 | 11..420 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:32:25 Download gff for
BO16961.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14370-RA | 185..595 | 11..420 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:32:25 Download gff for
BO16961.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13588181..13588591 | 11..420 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:45:27 Download gff for
BO16961.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9413903..9414313 | 11..420 | 98 | | Minus |
BO16961.5prime Sequence
428 bp (428 high quality bases) assembled on 2006-10-13
> BO16961.5prime
GAAGTTATCAGTCGACATGGTCAAGCATCTGGACAATGGACTTGTGTTCT
ACCGACTGATGCTGAGCTTTCCGCTAAGAATTGCACTGTATGCGGTGTAC
GTTTACCTGGAGAATTTGCTGGGGCTGATGCTTTTGATCCAGGAAGTTCT
GGTCCTTCAATTTCTATTCCTCTGCATGGTCATCCGGTGGGTATACCCAC
CGTGGCCAGCAAATGGTATCGCTTCATCGCTGAGGTTTCGCACACGGAAA
GCCCTCCAGATCTTCCTGACCATCTGGATCGTATTGCTCAACACGACCAC
CTATACGTGGAGCATCCCATGCCAGGGCATCATGCAACTCAGCCGACTAT
TCCGGATATGCGCCTATAGTCGCACCTGGATCATGATACAGCGCCACAAT
GGCGCCCGACGCGCAAGCTTTCTAGACC
BO16961.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14370-PA | 399 | CG14370-RA | 1..396 | 17..412 | 1980 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:48:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14370-RA | 729 | CG14370-RA | 191..586 | 17..412 | 1980 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:48:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13588187..13588582 | 17..412 | 1980 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:48:26 has no hits.
BO16961.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:00:20 Download gff for
BO16961.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14370-PA | 1..399 | 17..415 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:42:43 Download gff for
BO16961.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14370-RA | 185..595 | 11..420 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:50:01 Download gff for
BO16961.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14370-RA | 185..595 | 11..420 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:50:01 Download gff for
BO16961.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13588181..13588591 | 11..420 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:42:43 Download gff for
BO16961.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9413903..9414313 | 11..420 | 98 | | Plus |
BO16961.complete Sequence
430 bp assembled on 2006-10-11
GenBank Submission: FJ633997
> BO16961.complete
GAAGTTATCAGTCGACATGGTCAAGCATCTGGACAATGGACTTGTGTTCT
ACCGACTGATGCTGAGCTTTCCGCTAAGAATTGCACTGTATGCGGTGTAC
GTTTACCTGGAGAATTTGCTGGGGCTGATGCTTTTGATCCAGGAAGTTCT
GGTCCTTCAATTTCTATTCCTCTGCATGGTCATCCGGTGGGTATACCCAC
CGTGGCCAGCAAATGGTATCGCTTCATCGCTGAGGTTTCGCACACGGAAA
GCCCTCCAGATCTTCCTGACCATCTGGATCGTATTGCTCAACACGACCAC
CTATACGTGGAGCATCCCATGCCAGGGCATCATGCAACTCAGCCGACTAT
TCCGGATATGCGCCTATAGTCGCACCTGGATCATGATACAGCGCCACAAT
GGCGCCCGACGCGCAAGCTTTCTAGACCAT
BO16961.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:34:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14370-RA | 399 | CG14370-PA | 1..396 | 17..412 | 1980 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:34:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14370-RA | 729 | CG14370-RA | 191..586 | 17..412 | 1980 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:34:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13588187..13588582 | 17..412 | 1980 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:34:01 has no hits.
BO16961.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:13:55 Download gff for
BO16961.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14370-RA | 1..399 | 17..415 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:32:39 Download gff for
BO16961.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14370-RA | 1..399 | 17..415 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:00:20 Download gff for
BO16961.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14370-RA | 191..586 | 17..414 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:13:55 Download gff for
BO16961.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14370-RA | 1..399 | 17..415 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:22:08 Download gff for
BO16961.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14370-RA | 191..586 | 17..414 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:22:08 Download gff for
BO16961.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13588187..13588582 | 17..414 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:00:20 Download gff for
BO16961.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9413909..9414304 | 17..414 | 99 | | Plus |
BO16961.pep Sequence
Translation from 16 to 430
> BO16961.pep
MVKHLDNGLVFYRLMLSFPLRIALYAVYVYLENLLGLMLLIQEVLVLQFL
FLCMVIRWVYPPWPANGIASSLRFRTRKALQIFLTIWIVLLNTTTYTWSI
PCQGIMQLSRLFRICAYSRTWIMIQRHNGARRASFLDH
BO16961.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:16:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14370-PA | 132 | CG14370-PA | 1..132 | 1..132 | 693 | 100 | Plus |
