Clone Sequence Records
BO16962.3prime Sequence
323 bp (323 high quality bases) assembled on 2006-10-13
> BO16962.3prime
ATGGTCTAGAAAGCTTGCAGATCTGATCAGCTGTTGCTTAGTCTTTATGG
CCCTCCGCTTCTCAAGCCAACTGGTATAGTTGGGTGGAATGAAGTTGGCC
TCCTTCTTTATCTTCAACTTGGTCTCCATCCTGTGTATATCACGCTCCTC
CATCCACTGGCGACCGTAGTGCCAGGATAGAAGCAGTGCCATTTGGGGCT
CCTCCTGCTCGTACGTCGGTGTGAATGACTGGTGCCAGATACTTACTTTC
GCCCTCTCGTTTTTTGGGCGGAAAGCCTTTGCCGGCTCCCAATATTTCTT
TTCCGACATGTCGACTGATAACT
BO16962.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14659-PA | 294 | CG14659-RA | 1..291 | 309..19 | 1455 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:04:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14659-RA | 449 | CG14659-RA | 35..325 | 309..19 | 1455 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:03:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4830973..4831263 | 19..309 | 1455 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:04:00 has no hits.
BO16962.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:00:21 Download gff for
BO16962.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14659-PA | 1..294 | 16..309 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:24:56 Download gff for
BO16962.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14659-RA | 30..333 | 10..316 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:49:12 Download gff for
BO16962.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14659-RA | 30..333 | 10..316 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:49:12 Download gff for
BO16962.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4830964..4831268 | 10..316 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:24:56 Download gff for
BO16962.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 656686..656990 | 10..316 | 97 | | Plus |
BO16962.5prime Sequence
323 bp (323 high quality bases) assembled on 2006-10-13
> BO16962.5prime
GAAGTTATCAGTCGACATGTCGGAAAAGAAATATTGGGAGCCGGCAAAGG
CTTTCCGCCCAAAAAACGAGAGGGCGAAAGTAAGTATCTGGCACCAGTCA
TTCACACCGACGTACGAGCAGGAGGAGCCCCAAATGGCACTGCTTCTATC
CTGGCACTACGGTCGCCAGTGGATGGAGGAGCGTGATATACACAGGATGG
AGACCAAGTTGAAGATAAAGAAGGAGGCCAACTTCATTCCACCCAACTAT
ACCAGTTGGCTTGAGAAGCGGAGGGCCATAAAGACTAAGCAACAGCTGAT
CAGATCTGCAAGCTTTCTAGACC
BO16962.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14659-PA | 294 | CG14659-RA | 1..291 | 17..307 | 1455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:27:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14659-RA | 449 | CG14659-RA | 35..325 | 17..307 | 1455 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:27:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4830973..4831263 | 307..17 | 1455 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 10:27:14 has no hits.
BO16962.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:00:22 Download gff for
BO16962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14659-PA | 1..294 | 17..310 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:41:47 Download gff for
BO16962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14659-RA | 30..333 | 10..316 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:26:32 Download gff for
BO16962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14659-RA | 30..333 | 10..316 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:26:32 Download gff for
BO16962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4830964..4831268 | 10..316 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:41:47 Download gff for
BO16962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 656686..656990 | 10..316 | 97 | | Minus |
BO16962.complete Sequence
325 bp assembled on 2006-10-11
GenBank Submission: FJ633998
> BO16962.complete
GAAGTTATCAGTCGACATGTCGGAAAAGAAATATTGGGAGCCGGCAAAGG
CTTTCCGCCCAAAAAACGAGAGGGCGAAAGTAAGTATCTGGCACCAGTCA
TTCACACCGACGTACGAGCAGGAGGAGCCCCAAATGGCACTGCTTCTATC
CTGGCACTACGGTCGCCAGTGGATGGAGGAGCGTGATATACACAGGATGG
AGACCAAGTTGAAGATAAAGAAGGAGGCCAACTTCATTCCACCCAACTAT
ACCAGTTGGCTTGAGAAGCGGAGGGCCATAAAGACTAAGCAACAGCTGAT
CAGATCTGCAAGCTTTCTAGACCAT
BO16962.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:20:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14659-RA | 294 | CG14659-PA | 1..291 | 17..307 | 1455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:20:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14659-RA | 449 | CG14659-RA | 35..325 | 17..307 | 1455 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:20:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4830973..4831263 | 307..17 | 1455 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:20:05 has no hits.
BO16962.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:00 Download gff for
BO16962.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14659-RA | 1..294 | 17..310 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:19:42 Download gff for
BO16962.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14659-RA | 1..294 | 17..310 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:12:17 Download gff for
BO16962.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14659-RA | 35..325 | 17..309 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:00 Download gff for
BO16962.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14659-RA | 1..294 | 17..310 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:08:27 Download gff for
BO16962.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14659-RA | 35..325 | 17..309 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:08:27 Download gff for
BO16962.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4830969..4831263 | 17..309 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:12:17 Download gff for
BO16962.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 656691..656985 | 17..309 | 99 | | Minus |
BO16962.pep Sequence
Translation from 16 to 325
> BO16962.pep
MSEKKYWEPAKAFRPKNERAKVSIWHQSFTPTYEQEEPQMALLLSWHYGR
QWMEERDIHRMETKLKIKKEANFIPPNYTSWLEKRRAIKTKQQLIRSASF
LDH
BO16962.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:38:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14659-PA | 97 | CG14659-PA | 1..97 | 1..97 | 527 | 100 | Plus |
