Clone BO16963 Report

Search the DGRC for BO16963

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:169
Well:63
Vector:pDNR-Dual
Associated Gene/TranscriptCG14759-RA
Protein status:BO16963.pep: validated full length
Sequenced Size:412

Clone Sequence Records

BO16963.3prime Sequence

410 bp (410 high quality bases) assembled on 2006-10-13

> BO16963.3prime
ATGGTCTAGAAAGCTTGCCGGCTTCGAATCCGAGTCCAAAGCTACCGGAC
TTTTATCCATCATGTCCGCAATTGGTTCCGTGTCCGAAAACTGACGATGC
GGCCCTCGCACGGTATTGATTAAGAGGGTGCGGTGGGGCTGGAAACTTAG
CTCGTCCGTAACTCGTGTCATGTCCTTCCCGTAGTCGGCGTCCATGTGGC
GCAAGTTGAGGAAGCTCTTGACCAGCAGGAAGGGCGGCCTTTTTAGATCG
GTCCATGAACTCTTACGGTCCTGGAGCTTTACGGGCGCAGGTCTGCGATG
GTACGGAAGCCTGTGCTCTGACATTCGTCGCCTCTGCTGTAGCCGCATCT
TAGCCTCGAATATCGGGGACCCGATGAGAAGCCGACCGGTGAACATGTCG
ACTGATAACT

BO16963.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG14759-PA 381 CG14759-RA 1..378 396..19 1890 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:55:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG14759-RB 557 CG14759-RB 110..487 396..19 1890 100 Minus
CG14759-RA 643 CG14759-RA 196..573 396..19 1890 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:55:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8260036..8260413 396..19 1890 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:55:09 has no hits.

BO16963.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:00:22 Download gff for BO16963.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14759-PA 1..381 16..396 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:21:13 Download gff for BO16963.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14759-RA 192..573 19..404 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:05:47 Download gff for BO16963.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14759-RA 192..573 19..404 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:05:47 Download gff for BO16963.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 8260032..8260413 19..404 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:21:13 Download gff for BO16963.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4147537..4147918 19..404 98   Minus

BO16963.5prime Sequence

410 bp (410 high quality bases) assembled on 2006-10-13

> BO16963.5prime
GAAGTTATCAGTCGACATGTTCACCGGTCGGCTTCTCATCGGGTCCCCGA
TATTCGAGGCTAAGATGCGGCTACAGCAGAGGCGACGAATGTCAGAGCAC
AGGCTTCCGTACCATCGCAGACCTGCGCCCGTAAAGCTCCAGGACCGTAA
GAGTTCATGGACCGATCTAAAAAGGCCGCCCTTCCTGCTGGTCAAGAGCT
TCCTCAACTTGCGCCACATGGACGCCGACTACGGGAAGGACATGACACGA
GTTACGGACGAGCTAAGTTTCCAGCCCCACCGCACCCTCTTAATCAATAC
CGTGCGAGGGCCGCATCGTCAGTTTTCGGACACGGAACCAATTGCGGACA
TGATGGATAAAAGTCCGGTAGCTTTGGACTCGGATTCGAAGCCGGCAAGC
TTTCTAGACC

BO16963.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG14759-PA 381 CG14759-RA 1..378 17..394 1890 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:13:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG14759-RB 557 CG14759-RB 110..487 17..394 1890 100 Plus
CG14759-RA 643 CG14759-RA 196..573 17..394 1890 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:13:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8260036..8260413 17..394 1890 100 Plus
Blast to na_te.dros performed on 2015-02-02 18:13:48 has no hits.

BO16963.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:00:23 Download gff for BO16963.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14759-PA 1..381 17..397 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:41:51 Download gff for BO16963.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14759-RA 192..573 9..394 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:14:14 Download gff for BO16963.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14759-RA 192..573 9..394 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:14:14 Download gff for BO16963.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 8260032..8260413 9..394 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:41:51 Download gff for BO16963.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4147537..4147918 9..394 98   Plus

BO16963.complete Sequence

412 bp assembled on 2006-10-11

GenBank Submission: FJ633999

> BO16963.complete
GAAGTTATCAGTCGACATGTTCACCGGTCGGCTTCTCATCGGGTCCCCGA
TATTCGAGGCTAAGATGCGGCTACAGCAGAGGCGACGAATGTCAGAGCAC
AGGCTTCCGTACCATCGCAGACCTGCGCCCGTAAAGCTCCAGGACCGTAA
GAGTTCATGGACCGATCTAAAAAGGCCGCCCTTCCTGCTGGTCAAGAGCT
TCCTCAACTTGCGCCACATGGACGCCGACTACGGGAAGGACATGACACGA
GTTACGGACGAGCTAAGTTTCCAGCCCCACCGCACCCTCTTAATCAATAC
CGTGCGAGGGCCGCATCGTCAGTTTTCGGACACGGAACCAATTGCGGACA
TGATGGATAAAAGTCCGGTAGCTTTGGACTCGGATTCGAAGCCGGCAAGC
TTTCTAGACCAT

BO16963.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:50:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG14759-RB 381 CG14759-PB 1..378 17..394 1890 100 Plus
CG14759-RA 381 CG14759-PA 1..378 17..394 1890 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:50:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG14759-RB 557 CG14759-RB 110..487 17..394 1890 100 Plus
CG14759-RA 643 CG14759-RA 196..573 17..394 1890 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:50:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8260036..8260413 17..394 1890 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:50:51 has no hits.

BO16963.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:46 Download gff for BO16963.complete
Subject Subject Range Query Range Percent Splice Strand
CG14759-RA 1..381 17..397 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:20:51 Download gff for BO16963.complete
Subject Subject Range Query Range Percent Splice Strand
CG14759-RA 1..381 17..397 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:57 Download gff for BO16963.complete
Subject Subject Range Query Range Percent Splice Strand
CG14759-RA 201..573 22..396 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:47 Download gff for BO16963.complete
Subject Subject Range Query Range Percent Splice Strand
CG14759-RA 1..381 17..397 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:54:02 Download gff for BO16963.complete
Subject Subject Range Query Range Percent Splice Strand
CG14759-RA 201..573 22..396 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:54:02 Download gff for BO16963.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8260041..8260413 22..396 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:57 Download gff for BO16963.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4147546..4147918 22..396 99   Plus

BO16963.pep Sequence

Translation from 16 to 412

> BO16963.pep
MFTGRLLIGSPIFEAKMRLQQRRRMSEHRLPYHRRPAPVKLQDRKSSWTD
LKRPPFLLVKSFLNLRHMDADYGKDMTRVTDELSFQPHRTLLINTVRGPH
RQFSDTEPIADMMDKSPVALDSDSKPASFLDH

BO16963.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG14759-PB 126 CG14759-PB 1..126 1..126 662 100 Plus
CG14759-PA 126 CG14759-PA 1..126 1..126 662 100 Plus