Clone BO16970 Report

Search the DGRC for BO16970

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:169
Well:70
Vector:pDNR-Dual
Associated Gene/TranscriptCG18666-RA
Protein status:BO16970.pep: validated full length
Sequenced Size:415

Clone Sequence Records

BO16970.3prime Sequence

413 bp (413 high quality bases) assembled on 2006-10-13

> BO16970.3prime
ATGGTCTAGAAAGCTTGCTTCCGGCTTGCAATTGGCTTCACACTTTGGGT
GATTCTCCGTGTGATCTTCATCCTCCGTATCCGCCATGTTGCATTGCTCG
CTATGGCTGACGTAGTTGTAGTGCTCACGCCGCAACTCGAGAAACCTCAT
TCTTCGCCGGAGTCGCTCCTCCGGAGTTTCCTCGGTCACGACGAGGGTCT
CGCTACTTGGCAACGCAATGACAACCGAGGGGGCACTTGAAATATCAGGA
CGGGGAGCGTTGGGGTGTCGCAGAATCGAGGGGGATGCACTGATGGTAGG
ATCGGAATACTGATCTCGAACTGCTCTCTGGTTGGCATCGTCGTCACTGG
AATCATCATCCAACTGTTCCGGTTTATCTTTCTTATCCTTGTCAGACATG
TCGACTGATAACT

BO16970.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG18666-PA 384 CG18666-RA 1..381 399..19 1905 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:10:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG18666-RA 514 CG18666-RA 58..438 399..19 1905 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:10:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11034852..11035232 399..19 1905 100 Minus
Blast to na_te.dros performed on 2015-02-11 09:10:48 has no hits.

BO16970.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:00:34 Download gff for BO16970.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18666-PA 1..384 18..399 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:02:36 Download gff for BO16970.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18666-RA 58..446 11..399 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:19:03 Download gff for BO16970.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18666-RA 58..446 11..399 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:19:03 Download gff for BO16970.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 11034852..11035237 14..399 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:02:36 Download gff for BO16970.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11034852..11035237 14..399 99 -> Minus

BO16970.5prime Sequence

413 bp (413 high quality bases) assembled on 2006-10-13

> BO16970.5prime
GAAGTTATCAGTCGACATGTCTGACAAGGATAAGAAAGATAAACCGGAAC
AGTTGGATGATGATTCCAGTGACGACGATGCCAACCAGAGAGCAGTTCGA
GATCAGTATTCCGATCCTACCATCAGTGCATCCCCCTCGATTCTGCGACA
CCCCAACGCTCCCCGTCCTGATATTTCAAGTGCCCCCTCGGTTGTCATTG
CGTTGCCAAGTAGCGAGACCCTCGTCGTGACCGAGGAAACTCCGGAGGAG
CGACTCCGGCGAAGAATGAGGTTTCTCGAGTTGCGGCGTGAGCACTACAA
CTACGTCAGCCATAGCGAGCAATGCAACATGGCGGATACGGAGGATGAAG
ATCACACGGAGAATCACCCAAAGTGTGAAGCCAATTGCAAGCCGGAAGCA
AGCTTTCTAGACC

BO16970.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG18666-PA 384 CG18666-RA 1..381 17..397 1905 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:43:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG18666-RA 514 CG18666-RA 58..438 17..397 1905 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:43:38
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11034852..11035232 17..397 1905 100 Plus
Blast to na_te.dros performed on 2015-02-03 06:43:41 has no hits.

BO16970.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:00:35 Download gff for BO16970.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18666-PA 1..384 17..398 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:31:05 Download gff for BO16970.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18666-RA 58..446 17..405 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:38:58 Download gff for BO16970.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18666-RA 58..446 17..405 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:38:58 Download gff for BO16970.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 11034852..11035237 17..402 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:31:05 Download gff for BO16970.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11034852..11035237 17..402 99 -> Plus

BO16970.complete Sequence

415 bp assembled on 2006-10-11

GenBank Submission: FJ634000

> BO16970.complete
GAAGTTATCAGTCGACATGTCTGACAAGGATAAGAAAGATAAACCGGAAC
AGTTGGATGATGATTCCAGTGACGACGATGCCAACCAGAGAGCAGTTCGA
GATCAGTATTCCGATCCTACCATCAGTGCATCCCCCTCGATTCTGCGACA
CCCCAACGCTCCCCGTCCTGATATTTCAAGTGCCCCCTCGGTTGTCATTG
CGTTGCCAAGTAGCGAGACCCTCGTCGTGACCGAGGAAACTCCGGAGGAG
CGACTCCGGCGAAGAATGAGGTTTCTCGAGTTGCGGCGTGAGCACTACAA
CTACGTCAGCCATAGCGAGCAATGCAACATGGCGGATACGGAGGATGAAG
ATCACACGGAGAATCACCCAAAGTGTGAAGCCAATTGCAAGCCGGAAGCA
AGCTTTCTAGACCAT

BO16970.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:40:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG18666-RA 384 CG18666-PA 1..381 17..397 1905 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:40:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG18666-RA 514 CG18666-RA 58..438 17..397 1905 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:40:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11034852..11035232 17..397 1905 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:40:11 has no hits.

BO16970.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:25:31 Download gff for BO16970.complete
Subject Subject Range Query Range Percent Splice Strand
CG18666-RA 1..384 17..398 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:45:48 Download gff for BO16970.complete
Subject Subject Range Query Range Percent Splice Strand
CG18666-RA 1..384 17..398 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:55 Download gff for BO16970.complete
Subject Subject Range Query Range Percent Splice Strand
CG18666-RA 58..438 17..399 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:25:31 Download gff for BO16970.complete
Subject Subject Range Query Range Percent Splice Strand
CG18666-RA 1..384 17..398 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:50:16 Download gff for BO16970.complete
Subject Subject Range Query Range Percent Splice Strand
CG18666-RA 58..438 17..399 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:50:16 Download gff for BO16970.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11034852..11035232 17..399 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:55 Download gff for BO16970.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11034852..11035232 17..399 99   Plus

BO16970.pep Sequence

Translation from 16 to 415

> BO16970.pep
MSDKDKKDKPEQLDDDSSDDDANQRAVRDQYSDPTISASPSILRHPNAPR
PDISSAPSVVIALPSSETLVVTEETPEERLRRRMRFLELRREHYNYVSHS
EQCNMADTEDEDHTENHPKCEANCKPEASFLDH

BO16970.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:57:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG18666-PA 127 CG18666-PA 1..127 1..127 673 100 Plus