Clone Sequence Records
BO16970.3prime Sequence
413 bp (413 high quality bases) assembled on 2006-10-13
> BO16970.3prime
ATGGTCTAGAAAGCTTGCTTCCGGCTTGCAATTGGCTTCACACTTTGGGT
GATTCTCCGTGTGATCTTCATCCTCCGTATCCGCCATGTTGCATTGCTCG
CTATGGCTGACGTAGTTGTAGTGCTCACGCCGCAACTCGAGAAACCTCAT
TCTTCGCCGGAGTCGCTCCTCCGGAGTTTCCTCGGTCACGACGAGGGTCT
CGCTACTTGGCAACGCAATGACAACCGAGGGGGCACTTGAAATATCAGGA
CGGGGAGCGTTGGGGTGTCGCAGAATCGAGGGGGATGCACTGATGGTAGG
ATCGGAATACTGATCTCGAACTGCTCTCTGGTTGGCATCGTCGTCACTGG
AATCATCATCCAACTGTTCCGGTTTATCTTTCTTATCCTTGTCAGACATG
TCGACTGATAACT
BO16970.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18666-PA | 384 | CG18666-RA | 1..381 | 399..19 | 1905 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:10:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18666-RA | 514 | CG18666-RA | 58..438 | 399..19 | 1905 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:10:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11034852..11035232 | 399..19 | 1905 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:10:48 has no hits.
BO16970.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:00:34 Download gff for
BO16970.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18666-PA | 1..384 | 18..399 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:02:36 Download gff for
BO16970.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18666-RA | 58..446 | 11..399 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:19:03 Download gff for
BO16970.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18666-RA | 58..446 | 11..399 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:19:03 Download gff for
BO16970.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11034852..11035237 | 14..399 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:02:36 Download gff for
BO16970.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11034852..11035237 | 14..399 | 99 | -> | Minus |
BO16970.5prime Sequence
413 bp (413 high quality bases) assembled on 2006-10-13
> BO16970.5prime
GAAGTTATCAGTCGACATGTCTGACAAGGATAAGAAAGATAAACCGGAAC
AGTTGGATGATGATTCCAGTGACGACGATGCCAACCAGAGAGCAGTTCGA
GATCAGTATTCCGATCCTACCATCAGTGCATCCCCCTCGATTCTGCGACA
CCCCAACGCTCCCCGTCCTGATATTTCAAGTGCCCCCTCGGTTGTCATTG
CGTTGCCAAGTAGCGAGACCCTCGTCGTGACCGAGGAAACTCCGGAGGAG
CGACTCCGGCGAAGAATGAGGTTTCTCGAGTTGCGGCGTGAGCACTACAA
CTACGTCAGCCATAGCGAGCAATGCAACATGGCGGATACGGAGGATGAAG
ATCACACGGAGAATCACCCAAAGTGTGAAGCCAATTGCAAGCCGGAAGCA
AGCTTTCTAGACC
BO16970.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18666-PA | 384 | CG18666-RA | 1..381 | 17..397 | 1905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:43:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18666-RA | 514 | CG18666-RA | 58..438 | 17..397 | 1905 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:43:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11034852..11035232 | 17..397 | 1905 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 06:43:41 has no hits.
BO16970.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:00:35 Download gff for
BO16970.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18666-PA | 1..384 | 17..398 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:31:05 Download gff for
BO16970.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18666-RA | 58..446 | 17..405 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:38:58 Download gff for
BO16970.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18666-RA | 58..446 | 17..405 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:38:58 Download gff for
BO16970.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11034852..11035237 | 17..402 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:31:05 Download gff for
BO16970.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11034852..11035237 | 17..402 | 99 | -> | Plus |
BO16970.complete Sequence
415 bp assembled on 2006-10-11
GenBank Submission: FJ634000
> BO16970.complete
GAAGTTATCAGTCGACATGTCTGACAAGGATAAGAAAGATAAACCGGAAC
AGTTGGATGATGATTCCAGTGACGACGATGCCAACCAGAGAGCAGTTCGA
GATCAGTATTCCGATCCTACCATCAGTGCATCCCCCTCGATTCTGCGACA
CCCCAACGCTCCCCGTCCTGATATTTCAAGTGCCCCCTCGGTTGTCATTG
CGTTGCCAAGTAGCGAGACCCTCGTCGTGACCGAGGAAACTCCGGAGGAG
CGACTCCGGCGAAGAATGAGGTTTCTCGAGTTGCGGCGTGAGCACTACAA
CTACGTCAGCCATAGCGAGCAATGCAACATGGCGGATACGGAGGATGAAG
ATCACACGGAGAATCACCCAAAGTGTGAAGCCAATTGCAAGCCGGAAGCA
AGCTTTCTAGACCAT
BO16970.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:40:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18666-RA | 384 | CG18666-PA | 1..381 | 17..397 | 1905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:40:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18666-RA | 514 | CG18666-RA | 58..438 | 17..397 | 1905 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:40:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11034852..11035232 | 17..397 | 1905 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:40:11 has no hits.
BO16970.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:25:31 Download gff for
BO16970.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18666-RA | 1..384 | 17..398 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:45:48 Download gff for
BO16970.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18666-RA | 1..384 | 17..398 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:55 Download gff for
BO16970.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18666-RA | 58..438 | 17..399 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:25:31 Download gff for
BO16970.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18666-RA | 1..384 | 17..398 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:50:16 Download gff for
BO16970.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18666-RA | 58..438 | 17..399 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:50:16 Download gff for
BO16970.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11034852..11035232 | 17..399 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:55 Download gff for
BO16970.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11034852..11035232 | 17..399 | 99 | | Plus |
BO16970.pep Sequence
Translation from 16 to 415
> BO16970.pep
MSDKDKKDKPEQLDDDSSDDDANQRAVRDQYSDPTISASPSILRHPNAPR
PDISSAPSVVIALPSSETLVVTEETPEERLRRRMRFLELRREHYNYVSHS
EQCNMADTEDEDHTENHPKCEANCKPEASFLDH
BO16970.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:57:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18666-PA | 127 | CG18666-PA | 1..127 | 1..127 | 673 | 100 | Plus |