Clone Sequence Records
BO16982.3prime Sequence
410 bp (410 high quality bases) assembled on 2006-10-13
> BO16982.3prime
ATGGTCTAGAAAGCTTGCGTCCATTGGTTTGGTGGGTGCACAAACCCGTA
GATTGTGGATGGCCGCCCCAAGCGCAGACTTGGCCTTGAAGTACTCCTGA
CTGTCCCACAAATCACTCTTGTCCATCATGTAGGCAAGCAATTCTTGGTA
CTCCCGCATCAGCAGACGATGGGTGGCAGCCGTCTTCAACTGTTGCATCT
CAAATAGCTCGGAAAGAGTCGGCAGGTCCTCAAGCTCTTGATCACTCGCA
GTCTTCAGCCTAATATTTTCGTGCTGGGTTCTCAAAAGGCAATATTCATT
ATACTGCTCTCGCAGACTCTTGCCAAGATAATTGAGGACTGCAGTGCGCA
TAATAAATTGCCGTATGACCGGATCGGCATTAGTGCGGCGGAACATGTCG
ACTGATAACT
BO16982.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14684-PA | 381 | CG14684-RA | 1..378 | 396..19 | 1865 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:27:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14684-RA | 487 | CG14684-RA | 29..407 | 397..19 | 1880 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:27:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10707002..10707380 | 397..19 | 1880 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-06 10:27:25 has no hits.
BO16982.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:00:51 Download gff for
BO16982.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14684-PA | 1..381 | 15..396 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:41:50 Download gff for
BO16982.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14684-RA | 29..410 | 15..397 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:26:33 Download gff for
BO16982.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14684-RA | 29..410 | 15..397 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:26:33 Download gff for
BO16982.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10707002..10707383 | 15..397 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:41:50 Download gff for
BO16982.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6532724..6533105 | 15..397 | 99 | | Minus |
BO16982.5prime Sequence
410 bp (410 high quality bases) assembled on 2006-10-13
> BO16982.5prime
GAAGTTATCAGTCGACATGTTCCGCCGCACTAATGCCGATCCGGTCATAC
GGCAATTTATTCTGCGCACTGCAGTCCTCAATTATCTTGGCAAGAGTCTG
CGAGAGCAGTATAATGAATATTGCCTTTTGAGAACCCAGCACGAAAATAT
TAGGCTGAAGACTGCGAGTGATCAAGAGCTTGAGGACCTGCCGACTCTTT
CCGAGCTATTTGAGATGCAACAGTTGAAGACGGCTGCCACCCATCGTCTG
CTGATGCGGGAGTACCAAGAATTGCTTGCCTACATGATGGACAAGAGTGA
TTTGTGGGACAGTCAGGAGTACTTCAAGGCCAAGTCTGCGCTTGGGGCGG
CCATCCACAATCTACGGGTTTGTGCACCCACCAAACCAATGGACGCAAGC
TTTCTAGACC
BO16982.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14684-PA | 381 | CG14684-RA | 1..378 | 17..394 | 1890 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:12:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14684-RA | 487 | CG14684-RA | 29..407 | 16..394 | 1895 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:11:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10707002..10707380 | 16..394 | 1895 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:12:00 has no hits.
BO16982.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:00:52 Download gff for
BO16982.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14684-PA | 1..381 | 17..398 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:45:38 Download gff for
BO16982.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14684-RA | 29..410 | 16..398 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:33:51 Download gff for
BO16982.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14684-RA | 29..410 | 16..398 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:33:51 Download gff for
BO16982.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10707002..10707383 | 16..398 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:45:38 Download gff for
BO16982.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6532724..6533105 | 16..398 | 99 | | Plus |
BO16982.complete Sequence
412 bp assembled on 2006-10-11
GenBank Submission: FJ634001
> BO16982.complete
GAAGTTATCAGTCGACATGTTCCGCCGCACTAATGCCGATCCGGTCATAC
GGCAATTTATTCTGCGCACTGCAGTCCTCAATTATCTTGGCAAGAGTCTG
CGAGAGCAGTATAATGAATATTGCCTTTTGAGAACCCAGCACGAAAATAT
TAGGCTGAAGACTGCGAGTGATCAAGAGCTTGAGGACCTGCCGACTCTTT
CCGAGCTATTTGAGATGCAACAGTTGAAGACGGCTGCCACCCATCGTCTG
CTGATGCGGGAGTACCAAGAATTGCTTGCCTACATGATGGACAAGAGTGA
TTTGTGGGACAGTCAGGAGTACTTCAAGGCCAAGTCTGCGCTTGGGGCGG
CCATCCACAATCTACGGGTTTGTGCACCCACCAAACCAATGGACGCAAGC
TTTCTAGACCAT
BO16982.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:21:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14684-RA | 381 | CG14684-PA | 1..378 | 17..394 | 1890 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:21:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14684-RA | 487 | CG14684-RA | 29..407 | 16..394 | 1895 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:20:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10707002..10707380 | 16..394 | 1895 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:21:01 has no hits.
BO16982.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:25:33 Download gff for
BO16982.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14684-RA | 1..381 | 17..398 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:45:50 Download gff for
BO16982.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14684-RA | 29..410 | 16..398 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:50:29 Download gff for
BO16982.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14684-RA | 35..407 | 22..396 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:25:33 Download gff for
BO16982.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14684-RA | 29..410 | 16..398 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:18:52 Download gff for
BO16982.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14684-RA | 35..407 | 22..396 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:18:52 Download gff for
BO16982.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10707008..10707380 | 22..396 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:50:29 Download gff for
BO16982.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6532730..6533102 | 22..396 | 99 | | Plus |
BO16982.pep Sequence
Translation from 16 to 412
> BO16982.pep
MFRRTNADPVIRQFILRTAVLNYLGKSLREQYNEYCLLRTQHENIRLKTA
SDQELEDLPTLSELFEMQQLKTAATHRLLMREYQELLAYMMDKSDLWDSQ
EYFKAKSALGAAIHNLRVCAPTKPMDASFLDH
BO16982.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:57:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14684-PA | 126 | CG14684-PA | 1..126 | 1..126 | 648 | 100 | Plus |