Clone BO16982 Report

Search the DGRC for BO16982

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:169
Well:82
Vector:pDNR-Dual
Associated Gene/TranscriptCG14684-RA
Protein status:BO16982.pep: validated full length
Sequenced Size:412

Clone Sequence Records

BO16982.3prime Sequence

410 bp (410 high quality bases) assembled on 2006-10-13

> BO16982.3prime
ATGGTCTAGAAAGCTTGCGTCCATTGGTTTGGTGGGTGCACAAACCCGTA
GATTGTGGATGGCCGCCCCAAGCGCAGACTTGGCCTTGAAGTACTCCTGA
CTGTCCCACAAATCACTCTTGTCCATCATGTAGGCAAGCAATTCTTGGTA
CTCCCGCATCAGCAGACGATGGGTGGCAGCCGTCTTCAACTGTTGCATCT
CAAATAGCTCGGAAAGAGTCGGCAGGTCCTCAAGCTCTTGATCACTCGCA
GTCTTCAGCCTAATATTTTCGTGCTGGGTTCTCAAAAGGCAATATTCATT
ATACTGCTCTCGCAGACTCTTGCCAAGATAATTGAGGACTGCAGTGCGCA
TAATAAATTGCCGTATGACCGGATCGGCATTAGTGCGGCGGAACATGTCG
ACTGATAACT

BO16982.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG14684-PA 381 CG14684-RA 1..378 396..19 1865 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:27:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG14684-RA 487 CG14684-RA 29..407 397..19 1880 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:27:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10707002..10707380 397..19 1880 99.7 Minus
Blast to na_te.dros performed on 2015-02-06 10:27:25 has no hits.

BO16982.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:00:51 Download gff for BO16982.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14684-PA 1..381 15..396 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:41:50 Download gff for BO16982.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14684-RA 29..410 15..397 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:26:33 Download gff for BO16982.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14684-RA 29..410 15..397 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:26:33 Download gff for BO16982.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 10707002..10707383 15..397 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:41:50 Download gff for BO16982.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6532724..6533105 15..397 99   Minus

BO16982.5prime Sequence

410 bp (410 high quality bases) assembled on 2006-10-13

> BO16982.5prime
GAAGTTATCAGTCGACATGTTCCGCCGCACTAATGCCGATCCGGTCATAC
GGCAATTTATTCTGCGCACTGCAGTCCTCAATTATCTTGGCAAGAGTCTG
CGAGAGCAGTATAATGAATATTGCCTTTTGAGAACCCAGCACGAAAATAT
TAGGCTGAAGACTGCGAGTGATCAAGAGCTTGAGGACCTGCCGACTCTTT
CCGAGCTATTTGAGATGCAACAGTTGAAGACGGCTGCCACCCATCGTCTG
CTGATGCGGGAGTACCAAGAATTGCTTGCCTACATGATGGACAAGAGTGA
TTTGTGGGACAGTCAGGAGTACTTCAAGGCCAAGTCTGCGCTTGGGGCGG
CCATCCACAATCTACGGGTTTGTGCACCCACCAAACCAATGGACGCAAGC
TTTCTAGACC

BO16982.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG14684-PA 381 CG14684-RA 1..378 17..394 1890 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:12:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG14684-RA 487 CG14684-RA 29..407 16..394 1895 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:11:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10707002..10707380 16..394 1895 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:12:00 has no hits.

BO16982.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:00:52 Download gff for BO16982.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14684-PA 1..381 17..398 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:45:38 Download gff for BO16982.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14684-RA 29..410 16..398 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:33:51 Download gff for BO16982.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14684-RA 29..410 16..398 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:33:51 Download gff for BO16982.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 10707002..10707383 16..398 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:45:38 Download gff for BO16982.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6532724..6533105 16..398 99   Plus

BO16982.complete Sequence

412 bp assembled on 2006-10-11

GenBank Submission: FJ634001

> BO16982.complete
GAAGTTATCAGTCGACATGTTCCGCCGCACTAATGCCGATCCGGTCATAC
GGCAATTTATTCTGCGCACTGCAGTCCTCAATTATCTTGGCAAGAGTCTG
CGAGAGCAGTATAATGAATATTGCCTTTTGAGAACCCAGCACGAAAATAT
TAGGCTGAAGACTGCGAGTGATCAAGAGCTTGAGGACCTGCCGACTCTTT
CCGAGCTATTTGAGATGCAACAGTTGAAGACGGCTGCCACCCATCGTCTG
CTGATGCGGGAGTACCAAGAATTGCTTGCCTACATGATGGACAAGAGTGA
TTTGTGGGACAGTCAGGAGTACTTCAAGGCCAAGTCTGCGCTTGGGGCGG
CCATCCACAATCTACGGGTTTGTGCACCCACCAAACCAATGGACGCAAGC
TTTCTAGACCAT

BO16982.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:21:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG14684-RA 381 CG14684-PA 1..378 17..394 1890 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:21:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG14684-RA 487 CG14684-RA 29..407 16..394 1895 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:20:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10707002..10707380 16..394 1895 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:21:01 has no hits.

BO16982.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:25:33 Download gff for BO16982.complete
Subject Subject Range Query Range Percent Splice Strand
CG14684-RA 1..381 17..398 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:45:50 Download gff for BO16982.complete
Subject Subject Range Query Range Percent Splice Strand
CG14684-RA 29..410 16..398 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:50:29 Download gff for BO16982.complete
Subject Subject Range Query Range Percent Splice Strand
CG14684-RA 35..407 22..396 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:25:33 Download gff for BO16982.complete
Subject Subject Range Query Range Percent Splice Strand
CG14684-RA 29..410 16..398 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:18:52 Download gff for BO16982.complete
Subject Subject Range Query Range Percent Splice Strand
CG14684-RA 35..407 22..396 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:18:52 Download gff for BO16982.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10707008..10707380 22..396 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:50:29 Download gff for BO16982.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6532730..6533102 22..396 99   Plus

BO16982.pep Sequence

Translation from 16 to 412

> BO16982.pep
MFRRTNADPVIRQFILRTAVLNYLGKSLREQYNEYCLLRTQHENIRLKTA
SDQELEDLPTLSELFEMQQLKTAATHRLLMREYQELLAYMMDKSDLWDSQ
EYFKAKSALGAAIHNLRVCAPTKPMDASFLDH

BO16982.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:57:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG14684-PA 126 CG14684-PA 1..126 1..126 648 100 Plus