Clone BO16986 Report

Search the DGRC for BO16986

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:169
Well:86
Vector:pDNR-Dual
Associated Gene/TranscriptCG18577-RA
Protein status:BO16986.pep: validated full length
Sequenced Size:376

Clone Sequence Records

BO16986.3prime Sequence

374 bp (374 high quality bases) assembled on 2006-10-13

> BO16986.3prime
ATGGTCTAGAAAGCTTGCGAAATTCGATGGCCTATAGTCATAGGCAGGTC
CCATGCGAATGGAGATGTTGATGGGTTCGTTTAAACGCTCTGTCATCAGC
CGTTTTTCTGCTTCGCTCTCGCAACTCCGATAGCCTTTCCGGCGGGCCGA
TTTGTTAAGACGTAACGATCGCCTCAGTTCTTTGGGCAGCGGTTTATTCG
TTTCACGCCGGAGAAAACTTCCGAATTTGTGGCACTTCTCGGCGAGATTC
TGCCACACCAGCAGGATCAGACGCGTGTGCCGCGACGAGGTGGATGAGGC
TTTGGAGCCTTTGGTACCACAATCGCGCAGCTCGGTGGTGGAGACAACCC
ACGACGACATGTCGACTGATAACT

BO16986.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG18577-PA 345 CG18577-RA 1..342 360..19 1710 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:15:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG18577-RA 810 CG18577-RA 15..356 360..19 1710 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:15:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11196106..11196366 360..100 1305 100 Minus
3R 32079331 3R 11196749..11196831 101..19 415 100 Minus
Blast to na_te.dros performed on 2015-02-02 18:15:21 has no hits.

BO16986.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:00:57 Download gff for BO16986.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18577-PA 1..345 16..360 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:41:56 Download gff for BO16986.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18577-RA 9..356 19..366 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:14:24 Download gff for BO16986.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18577-RA 9..356 19..366 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:14:24 Download gff for BO16986.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 11196100..11196365 101..366 99 -> Minus
3R 11196750..11196836 13..100 95 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:41:56 Download gff for BO16986.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7022472..7022558 13..100 95 -> Minus
arm_3R 7021822..7022087 101..366 99 -> Minus

BO16986.5prime Sequence

374 bp (374 high quality bases) assembled on 2006-10-13

> BO16986.5prime
GAAGTTATCAGTCGACATGTCGTCGTGGGTTGTCTCCACCACCGAGCTGC
GCGATTGTGGTACCAAAGGCTCCAAAGCCTCATCCACCTCGTCGCGGCAC
ACGCGTCTGATCCTGCTGGTGTGGCAGAATCTCGCCGAGAAGTGCCACAA
ATTCGGAAGTTTTCTCCGGCGTGAAACGAATAAACCGCTGCCCAAAGAAC
TGAGGCGATCGTTACGTCTTAACAAATCGGCCCGCCGGAAAGGCTATCGG
AGTTGCGAGAGCGAAGCAGAAAAACGGCTGATGACAGAGCGTTTAAACGA
ACCCATCAACATCTCCATTCGCATGGGACCTGCCTATGACTATAGGCCAT
CGAATTTCGCAAGCTTTCTAGACC

BO16986.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG18577-PA 345 CG18577-RA 1..342 17..358 1710 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:11:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG18577-RA 810 CG18577-RA 15..356 17..358 1710 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:11:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11196106..11196366 17..277 1305 100 Plus
3R 32079331 3R 11196749..11196831 276..358 415 100 Plus
Blast to na_te.dros performed on 2015-02-11 09:11:01 has no hits.

BO16986.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:00:58 Download gff for BO16986.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18577-PA 1..345 17..361 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:02:45 Download gff for BO16986.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18577-RA 9..356 11..358 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:19:41 Download gff for BO16986.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18577-RA 9..356 11..358 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:19:41 Download gff for BO16986.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 11196100..11196365 11..276 99 -> Plus
3R 11196750..11196831 277..358 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:02:45 Download gff for BO16986.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7022472..7022553 277..358 100   Plus
arm_3R 7021822..7022087 11..276 99 -> Plus

BO16986.complete Sequence

376 bp assembled on 2006-10-11

GenBank Submission: FJ634002

> BO16986.complete
GAAGTTATCAGTCGACATGTCGTCGTGGGTTGTCTCCACCACCGAGCTGC
GCGATTGTGGTACCAAAGGCTCCAAAGCCTCATCCACCTCGTCGCGGCAC
ACGCGTCTGATCCTGCTGGTGTGGCAGAATCTCGCCGAGAAGTGCCACAA
ATTCGGAAGTTTTCTCCGGCGTGAAACGAATAAACCGCTGCCCAAAGAAC
TGAGGCGATCGTTACGTCTTAACAAATCGGCCCGCCGGAAAGGCTATCGG
AGTTGCGAGAGCGAAGCAGAAAAACGGCTGATGACAGAGCGTTTAAACGA
ACCCATCAACATCTCCATTCGCATGGGACCTGCCTATGACTATAGGCCAT
CGAATTTCGCAAGCTTTCTAGACCAT

BO16986.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:23:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG18577-RA 345 CG18577-PA 1..342 17..358 1710 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:23:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG18577-RA 810 CG18577-RA 15..356 17..358 1710 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:23:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11196106..11196366 17..277 1305 100 Plus
3R 32079331 3R 11196749..11196831 276..358 415 100 Plus
Blast to na_te.dros performed on 2014-11-28 08:23:38 has no hits.

BO16986.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:25:35 Download gff for BO16986.complete
Subject Subject Range Query Range Percent Splice Strand
CG18577-RA 1..345 17..361 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:51:04 Download gff for BO16986.complete
Subject Subject Range Query Range Percent Splice Strand
CG18577-RA 3..344 17..360 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:18 Download gff for BO16986.complete
Subject Subject Range Query Range Percent Splice Strand
CG18577-RA 15..356 17..360 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:25:35 Download gff for BO16986.complete
Subject Subject Range Query Range Percent Splice Strand
CG18577-RA 1..342 17..358 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:17:05 Download gff for BO16986.complete
Subject Subject Range Query Range Percent Splice Strand
CG18577-RA 15..356 17..360 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:17:05 Download gff for BO16986.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11196106..11196365 17..276 100 -> Plus
3R 11196750..11196831 277..360 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:18 Download gff for BO16986.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7021828..7022087 17..276 100 -> Plus
arm_3R 7022472..7022553 277..360 97   Plus

BO16986.pep Sequence

Translation from 16 to 376

> BO16986.pep
MSSWVVSTTELRDCGTKGSKASSTSSRHTRLILLVWQNLAEKCHKFGSFL
RRETNKPLPKELRRSLRLNKSARRKGYRSCESEAEKRLMTERLNEPINIS
IRMGPAYDYRPSNFASFLDH

BO16986.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:57:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG18577-PA 114 CG18577-PA 1..114 1..114 593 100 Plus