Clone Sequence Records
BO16986.3prime Sequence
374 bp (374 high quality bases) assembled on 2006-10-13
> BO16986.3prime
ATGGTCTAGAAAGCTTGCGAAATTCGATGGCCTATAGTCATAGGCAGGTC
CCATGCGAATGGAGATGTTGATGGGTTCGTTTAAACGCTCTGTCATCAGC
CGTTTTTCTGCTTCGCTCTCGCAACTCCGATAGCCTTTCCGGCGGGCCGA
TTTGTTAAGACGTAACGATCGCCTCAGTTCTTTGGGCAGCGGTTTATTCG
TTTCACGCCGGAGAAAACTTCCGAATTTGTGGCACTTCTCGGCGAGATTC
TGCCACACCAGCAGGATCAGACGCGTGTGCCGCGACGAGGTGGATGAGGC
TTTGGAGCCTTTGGTACCACAATCGCGCAGCTCGGTGGTGGAGACAACCC
ACGACGACATGTCGACTGATAACT
BO16986.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18577-PA | 345 | CG18577-RA | 1..342 | 360..19 | 1710 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:15:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18577-RA | 810 | CG18577-RA | 15..356 | 360..19 | 1710 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:15:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11196106..11196366 | 360..100 | 1305 | 100 | Minus |
3R | 32079331 | 3R | 11196749..11196831 | 101..19 | 415 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 18:15:21 has no hits.
BO16986.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:00:57 Download gff for
BO16986.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18577-PA | 1..345 | 16..360 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:41:56 Download gff for
BO16986.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18577-RA | 9..356 | 19..366 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:14:24 Download gff for
BO16986.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18577-RA | 9..356 | 19..366 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:14:24 Download gff for
BO16986.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11196100..11196365 | 101..366 | 99 | -> | Minus |
3R | 11196750..11196836 | 13..100 | 95 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:41:56 Download gff for
BO16986.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7022472..7022558 | 13..100 | 95 | -> | Minus |
arm_3R | 7021822..7022087 | 101..366 | 99 | -> | Minus |
BO16986.5prime Sequence
374 bp (374 high quality bases) assembled on 2006-10-13
> BO16986.5prime
GAAGTTATCAGTCGACATGTCGTCGTGGGTTGTCTCCACCACCGAGCTGC
GCGATTGTGGTACCAAAGGCTCCAAAGCCTCATCCACCTCGTCGCGGCAC
ACGCGTCTGATCCTGCTGGTGTGGCAGAATCTCGCCGAGAAGTGCCACAA
ATTCGGAAGTTTTCTCCGGCGTGAAACGAATAAACCGCTGCCCAAAGAAC
TGAGGCGATCGTTACGTCTTAACAAATCGGCCCGCCGGAAAGGCTATCGG
AGTTGCGAGAGCGAAGCAGAAAAACGGCTGATGACAGAGCGTTTAAACGA
ACCCATCAACATCTCCATTCGCATGGGACCTGCCTATGACTATAGGCCAT
CGAATTTCGCAAGCTTTCTAGACC
BO16986.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18577-PA | 345 | CG18577-RA | 1..342 | 17..358 | 1710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:11:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18577-RA | 810 | CG18577-RA | 15..356 | 17..358 | 1710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:11:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11196106..11196366 | 17..277 | 1305 | 100 | Plus |
3R | 32079331 | 3R | 11196749..11196831 | 276..358 | 415 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:11:01 has no hits.
BO16986.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:00:58 Download gff for
BO16986.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18577-PA | 1..345 | 17..361 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:02:45 Download gff for
BO16986.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18577-RA | 9..356 | 11..358 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:19:41 Download gff for
BO16986.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18577-RA | 9..356 | 11..358 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:19:41 Download gff for
BO16986.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11196100..11196365 | 11..276 | 99 | -> | Plus |
3R | 11196750..11196831 | 277..358 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:02:45 Download gff for
BO16986.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7022472..7022553 | 277..358 | 100 | | Plus |
arm_3R | 7021822..7022087 | 11..276 | 99 | -> | Plus |
BO16986.complete Sequence
376 bp assembled on 2006-10-11
GenBank Submission: FJ634002
> BO16986.complete
GAAGTTATCAGTCGACATGTCGTCGTGGGTTGTCTCCACCACCGAGCTGC
GCGATTGTGGTACCAAAGGCTCCAAAGCCTCATCCACCTCGTCGCGGCAC
ACGCGTCTGATCCTGCTGGTGTGGCAGAATCTCGCCGAGAAGTGCCACAA
ATTCGGAAGTTTTCTCCGGCGTGAAACGAATAAACCGCTGCCCAAAGAAC
TGAGGCGATCGTTACGTCTTAACAAATCGGCCCGCCGGAAAGGCTATCGG
AGTTGCGAGAGCGAAGCAGAAAAACGGCTGATGACAGAGCGTTTAAACGA
ACCCATCAACATCTCCATTCGCATGGGACCTGCCTATGACTATAGGCCAT
CGAATTTCGCAAGCTTTCTAGACCAT
BO16986.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:23:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18577-RA | 345 | CG18577-PA | 1..342 | 17..358 | 1710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:23:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18577-RA | 810 | CG18577-RA | 15..356 | 17..358 | 1710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:23:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11196106..11196366 | 17..277 | 1305 | 100 | Plus |
3R | 32079331 | 3R | 11196749..11196831 | 276..358 | 415 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:23:38 has no hits.
BO16986.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:25:35 Download gff for
BO16986.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18577-RA | 1..345 | 17..361 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:51:04 Download gff for
BO16986.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18577-RA | 3..344 | 17..360 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:18 Download gff for
BO16986.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18577-RA | 15..356 | 17..360 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:25:35 Download gff for
BO16986.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18577-RA | 1..342 | 17..358 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:17:05 Download gff for
BO16986.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18577-RA | 15..356 | 17..360 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:17:05 Download gff for
BO16986.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11196106..11196365 | 17..276 | 100 | -> | Plus |
3R | 11196750..11196831 | 277..360 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:18 Download gff for
BO16986.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7021828..7022087 | 17..276 | 100 | -> | Plus |
arm_3R | 7022472..7022553 | 277..360 | 97 | | Plus |
BO16986.pep Sequence
Translation from 16 to 376
> BO16986.pep
MSSWVVSTTELRDCGTKGSKASSTSSRHTRLILLVWQNLAEKCHKFGSFL
RRETNKPLPKELRRSLRLNKSARRKGYRSCESEAEKRLMTERLNEPINIS
IRMGPAYDYRPSNFASFLDH
BO16986.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:57:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18577-PA | 114 | CG18577-PA | 1..114 | 1..114 | 593 | 100 | Plus |