Clone BO16987 Report

Search the DGRC for BO16987

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:169
Well:87
Vector:pDNR-Dual
Associated Gene/TranscriptCG30441-RB
Protein status:BO16987.pep: validated full length
Sequenced Size:427

Clone Sequence Records

BO16987.3prime Sequence

425 bp (425 high quality bases) assembled on 2006-10-13

> BO16987.3prime
ATGGTCTAGAAAGCTTGCATATTGATTGACAAAAAAATTGTTTATTATTT
CATGTTGCTCCGTTTCAATTCGCTGTAAAAACTGCAATTCGCCTTTTAAG
CGTTCAAGTTCTACTGTTTGCTCAAATATCTCATATTGATAGACTTGCTG
CTTGTTCTGGCGCTGAATAAATGCCGTTTTTAATTGATTTTGAGTACCAA
TAGCGCGTAGTTTTTCCTTATCGACATCTTTGGCAAACGTTTCAGAAATA
TTACAATAATTAAACACAAACTTTTTAAAAATAGTGAATGCTTTAATGTA
GTTGAAGCATTCTTGTTTAAACATTATTTTGCTACTGGAAAGGTTTGGAT
GCTCAACTCGCACCGTGTAAATTTCATCTATAAACACACCAACTTTTTGA
AGTTCTTCCATGTCGACTGATAACT

BO16987.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG30441-PA 402 CG30441-RA 7..399 411..19 1965 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:12:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG30441-RB 406 CG30441-RB 7..399 411..19 1965 100 Minus
CG10395-RE 1438 CG10395-RE 1190..1438 19..267 1245 100 Plus
CG10395-RD 1175 CG10395-RD 927..1175 19..267 1245 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:12:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5351724..5352116 19..411 1965 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:12:14 has no hits.

BO16987.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:00:58 Download gff for BO16987.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30441-PA 1..402 15..418 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:45:42 Download gff for BO16987.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30441-RB 1..406 11..418 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:34:20 Download gff for BO16987.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30441-RB 1..406 11..418 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:34:20 Download gff for BO16987.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 5351717..5352123 11..419 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:45:42 Download gff for BO16987.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1239222..1239628 11..419 98   Plus

BO16987.5prime Sequence

425 bp (425 high quality bases) assembled on 2006-10-13

> BO16987.5prime
GAAGTTATCAGTCGACATGGAAGAACTTCAAAAAGTTGGTGTGTTTATAG
ATGAAATTTACACGGTGCGAGTTGAGCATCCAAACCTTTCCAGTAGCAAA
ATAATGTTTAAACAAGAATGCTTCAACTACATTAAAGCATTCACTATTTT
TAAAAAGTTTGTGTTTAATTATTGTAATATTTCTGAAACGTTTGCCAAAG
ATGTCGATAAGGAAAAACTACGCGCTATTGGTACTCAAAATCAATTAAAA
ACGGCATTTATTCAGCGCCAGAACAAGCAGCAAGTCTATCAATATGAGAT
ATTTGAGCAAACAGTAGAACTTGAACGCTTAAAAGGCGAATTGCAGTTTT
TACAGCGAATTGAAACGGAGCAACATGAAATAATAAACAATTTTTTTGTC
AATCAATATGCAAGCTTTCTAGACC

BO16987.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG30441-PA 402 CG30441-RA 7..399 17..409 1965 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:15:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG30441-RB 406 CG30441-RB 7..399 17..409 1965 100 Plus
CG10395-RE 1438 CG10395-RE 1190..1438 409..161 1245 100 Minus
CG10395-RD 1175 CG10395-RD 927..1175 409..161 1245 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:15:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5351724..5352116 409..17 1965 100 Minus
Blast to na_te.dros performed on 2015-02-02 18:15:48 has no hits.

BO16987.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:01:00 Download gff for BO16987.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30441-PA 1..402 10..413 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:41:58 Download gff for BO16987.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30441-RB 1..406 10..417 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:14:26 Download gff for BO16987.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30441-RB 1..406 10..417 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:14:26 Download gff for BO16987.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 5351717..5352123 9..417 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:41:58 Download gff for BO16987.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1239222..1239628 9..417 98   Minus

BO16987.complete Sequence

427 bp assembled on 2006-10-11

GenBank Submission: FJ634003

> BO16987.complete
GAAGTTATCAGTCGACATGGAAGAACTTCAAAAAGTTGGTGTGTTTATAG
ATGAAATTTACACGGTGCGAGTTGAGCATCCAAACCTTTCCAGTAGCAAA
ATAATGTTTAAACAAGAATGCTTCAACTACATTAAAGCATTCACTATTTT
TAAAAAGTTTGTGTTTAATTATTGTAATATTTCTGAAACGTTTGCCAAAG
ATGTCGATAAGGAAAAACTACGCGCTATTGGTACTCAAAATCAATTAAAA
ACGGCATTTATTCAGCGCCAGAACAAGCAGCAAGTCTATCAATATGAGAT
ATTTGAGCAAACAGTAGAACTTGAACGCTTAAAAGGCGAATTGCAGTTTT
TACAGCGAATTGAAACGGAGCAACATGAAATAATAAACAATTTTTTTGTC
AATCAATATGCAAGCTTTCTAGACCAT

BO16987.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:27:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG30441-RB 396 CG30441-PB 1..393 17..409 1965 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:27:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG30441-RB 406 CG30441-RB 7..399 17..409 1965 100 Plus
CG10395-RE 1438 CG10395-RE 1190..1438 409..161 1245 100 Minus
CG10395-RD 1175 CG10395-RD 927..1175 409..161 1245 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:27:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5351724..5352116 409..17 1965 100 Minus
Blast to na_te.dros performed on 2014-11-26 22:27:48 has no hits.

BO16987.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:25:37 Download gff for BO16987.complete
Subject Subject Range Query Range Percent Splice Strand
CG30441-RB 1..396 17..413 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:45:53 Download gff for BO16987.complete
Subject Subject Range Query Range Percent Splice Strand
CG30441-RB 1..406 10..417 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:59:00 Download gff for BO16987.complete
Subject Subject Range Query Range Percent Splice Strand
CG30441-RB 7..399 17..411 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:25:38 Download gff for BO16987.complete
Subject Subject Range Query Range Percent Splice Strand
CG30441-RB 1..406 10..417 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:01:52 Download gff for BO16987.complete
Subject Subject Range Query Range Percent Splice Strand
CG30441-RB 7..399 17..411 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:01:52 Download gff for BO16987.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5351722..5352116 17..411 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:59:00 Download gff for BO16987.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1239227..1239621 17..411 99   Minus

BO16987.pep Sequence

Translation from 16 to 427

> BO16987.pep
MEELQKVGVFIDEIYTVRVEHPNLSSSKIMFKQECFNYIKAFTIFKKFVF
NYCNISETFAKDVDKEKLRAIGTQNQLKTAFIQRQNKQQVYQYEIFEQTV
ELERLKGELQFLQRIETEQHEIINNFFVNQYASFLDH

BO16987.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:57:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG30441-PB 131 CG30441-PB 1..131 1..131 674 100 Plus