Clone Sequence Records
BO16987.3prime Sequence
425 bp (425 high quality bases) assembled on 2006-10-13
> BO16987.3prime
ATGGTCTAGAAAGCTTGCATATTGATTGACAAAAAAATTGTTTATTATTT
CATGTTGCTCCGTTTCAATTCGCTGTAAAAACTGCAATTCGCCTTTTAAG
CGTTCAAGTTCTACTGTTTGCTCAAATATCTCATATTGATAGACTTGCTG
CTTGTTCTGGCGCTGAATAAATGCCGTTTTTAATTGATTTTGAGTACCAA
TAGCGCGTAGTTTTTCCTTATCGACATCTTTGGCAAACGTTTCAGAAATA
TTACAATAATTAAACACAAACTTTTTAAAAATAGTGAATGCTTTAATGTA
GTTGAAGCATTCTTGTTTAAACATTATTTTGCTACTGGAAAGGTTTGGAT
GCTCAACTCGCACCGTGTAAATTTCATCTATAAACACACCAACTTTTTGA
AGTTCTTCCATGTCGACTGATAACT
BO16987.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30441-PA | 402 | CG30441-RA | 7..399 | 411..19 | 1965 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:12:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30441-RB | 406 | CG30441-RB | 7..399 | 411..19 | 1965 | 100 | Minus |
CG10395-RE | 1438 | CG10395-RE | 1190..1438 | 19..267 | 1245 | 100 | Plus |
CG10395-RD | 1175 | CG10395-RD | 927..1175 | 19..267 | 1245 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:12:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 5351724..5352116 | 19..411 | 1965 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:12:14 has no hits.
BO16987.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:00:58 Download gff for
BO16987.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30441-PA | 1..402 | 15..418 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:45:42 Download gff for
BO16987.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30441-RB | 1..406 | 11..418 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:34:20 Download gff for
BO16987.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30441-RB | 1..406 | 11..418 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:34:20 Download gff for
BO16987.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 5351717..5352123 | 11..419 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:45:42 Download gff for
BO16987.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 1239222..1239628 | 11..419 | 98 | | Plus |
BO16987.5prime Sequence
425 bp (425 high quality bases) assembled on 2006-10-13
> BO16987.5prime
GAAGTTATCAGTCGACATGGAAGAACTTCAAAAAGTTGGTGTGTTTATAG
ATGAAATTTACACGGTGCGAGTTGAGCATCCAAACCTTTCCAGTAGCAAA
ATAATGTTTAAACAAGAATGCTTCAACTACATTAAAGCATTCACTATTTT
TAAAAAGTTTGTGTTTAATTATTGTAATATTTCTGAAACGTTTGCCAAAG
ATGTCGATAAGGAAAAACTACGCGCTATTGGTACTCAAAATCAATTAAAA
ACGGCATTTATTCAGCGCCAGAACAAGCAGCAAGTCTATCAATATGAGAT
ATTTGAGCAAACAGTAGAACTTGAACGCTTAAAAGGCGAATTGCAGTTTT
TACAGCGAATTGAAACGGAGCAACATGAAATAATAAACAATTTTTTTGTC
AATCAATATGCAAGCTTTCTAGACC
BO16987.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30441-PA | 402 | CG30441-RA | 7..399 | 17..409 | 1965 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:15:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30441-RB | 406 | CG30441-RB | 7..399 | 17..409 | 1965 | 100 | Plus |
CG10395-RE | 1438 | CG10395-RE | 1190..1438 | 409..161 | 1245 | 100 | Minus |
CG10395-RD | 1175 | CG10395-RD | 927..1175 | 409..161 | 1245 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:15:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 5351724..5352116 | 409..17 | 1965 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 18:15:48 has no hits.
BO16987.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:01:00 Download gff for
BO16987.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30441-PA | 1..402 | 10..413 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:41:58 Download gff for
BO16987.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30441-RB | 1..406 | 10..417 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:14:26 Download gff for
BO16987.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30441-RB | 1..406 | 10..417 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:14:26 Download gff for
BO16987.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 5351717..5352123 | 9..417 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:41:58 Download gff for
BO16987.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 1239222..1239628 | 9..417 | 98 | | Minus |
BO16987.complete Sequence
427 bp assembled on 2006-10-11
GenBank Submission: FJ634003
> BO16987.complete
GAAGTTATCAGTCGACATGGAAGAACTTCAAAAAGTTGGTGTGTTTATAG
ATGAAATTTACACGGTGCGAGTTGAGCATCCAAACCTTTCCAGTAGCAAA
ATAATGTTTAAACAAGAATGCTTCAACTACATTAAAGCATTCACTATTTT
TAAAAAGTTTGTGTTTAATTATTGTAATATTTCTGAAACGTTTGCCAAAG
ATGTCGATAAGGAAAAACTACGCGCTATTGGTACTCAAAATCAATTAAAA
ACGGCATTTATTCAGCGCCAGAACAAGCAGCAAGTCTATCAATATGAGAT
ATTTGAGCAAACAGTAGAACTTGAACGCTTAAAAGGCGAATTGCAGTTTT
TACAGCGAATTGAAACGGAGCAACATGAAATAATAAACAATTTTTTTGTC
AATCAATATGCAAGCTTTCTAGACCAT
BO16987.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:27:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30441-RB | 396 | CG30441-PB | 1..393 | 17..409 | 1965 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:27:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30441-RB | 406 | CG30441-RB | 7..399 | 17..409 | 1965 | 100 | Plus |
CG10395-RE | 1438 | CG10395-RE | 1190..1438 | 409..161 | 1245 | 100 | Minus |
CG10395-RD | 1175 | CG10395-RD | 927..1175 | 409..161 | 1245 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:27:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 5351724..5352116 | 409..17 | 1965 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:27:48 has no hits.
BO16987.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:25:37 Download gff for
BO16987.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30441-RB | 1..396 | 17..413 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:45:53 Download gff for
BO16987.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30441-RB | 1..406 | 10..417 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:59:00 Download gff for
BO16987.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30441-RB | 7..399 | 17..411 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:25:38 Download gff for
BO16987.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30441-RB | 1..406 | 10..417 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:01:52 Download gff for
BO16987.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30441-RB | 7..399 | 17..411 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:01:52 Download gff for
BO16987.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 5351722..5352116 | 17..411 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:59:00 Download gff for
BO16987.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 1239227..1239621 | 17..411 | 99 | | Minus |
BO16987.pep Sequence
Translation from 16 to 427
> BO16987.pep
MEELQKVGVFIDEIYTVRVEHPNLSSSKIMFKQECFNYIKAFTIFKKFVF
NYCNISETFAKDVDKEKLRAIGTQNQLKTAFIQRQNKQQVYQYEIFEQTV
ELERLKGELQFLQRIETEQHEIINNFFVNQYASFLDH
BO16987.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:57:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30441-PB | 131 | CG30441-PB | 1..131 | 1..131 | 674 | 100 | Plus |