Clone Sequence Records
BO16991.3prime Sequence
474 bp (432 high quality bases) assembled on 2006-10-13
> BO16991.3prime
ATGGTCTAGAAAGCTTGCCTTTATCTTGTCCTTTTCATCCTTGCCCTTTG
GTTCGTCAGCTTTCTTGCCATCTTTGGCTTTCACTTCTTTTTCCCCACCC
TTTTCTTTGGCCTTTACTTCTTTATCTCTATTCTTTTTCTCAGGCTTTGG
TTGGTTCTCTGGTAGATCATCAACCGAAATGGGATCAATATCAATATCGG
GCAACTTGAATTTCGGAAACTCGAGCATATCCACGCCCTCGCCGCCGCCG
TATTGCAGAGCCAGGCGCTCAGTGACTTCCTTCAGCTCCGCCTCGAATTC
CGGACCAGGATCTACGGGCTTTCCCTTGGGACTCTTCAGCCGATACTCGC
GCACCTTGTCCAGGAAAAATCTGATAAATGGGATCCTTGTAGCGAAGGGA
TGCGGTATTGCTCACACTCCTACATAAAACTAGGCTTGGTTTAAGGAAAC
GGCTAAACATGTCGACTGATAACT
BO16991.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12027-PA | 444 | CG12027-RA | 92..441 | 368..19 | 1750 | 100 | Minus |
| CG12027-PA | 444 | CG12027-RA | 1..95 | 460..366 | 450 | 98.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:05:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12027-RA | 635 | CG12027-RA | 39..479 | 460..19 | 2170 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:04:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5011800..5012095 | 164..460 | 1420 | 99.3 | Plus |
| 3L | 28110227 | 3L | 5011600..5011744 | 19..163 | 725 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:04:58 has no hits.
BO16991.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:01:04 Download gff for
BO16991.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12027-PA | 1..444 | 18..460 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:25:11 Download gff for
BO16991.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12027-RA | 39..479 | 19..460 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:51:08 Download gff for
BO16991.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12027-RA | 39..479 | 19..460 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:51:08 Download gff for
BO16991.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5011800..5012095 | 164..460 | 99 | | Plus |
| 3L | 5011600..5011744 | 19..163 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:25:11 Download gff for
BO16991.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5011600..5011744 | 19..163 | 100 | <- | Plus |
| arm_3L | 5011800..5012095 | 164..460 | 99 | | Plus |
BO16991.5prime Sequence
473 bp (430 high quality bases) assembled on 2006-10-13
> BO16991.5prime
GAAGTTATCAGTCGACATGTTTAGCCGTTTCCTAAAACCAAGCCTAGTTT
TATGTAGGAGTGTGAGCAATACCGCATCCCTTCGCTACAAGGATCCCATT
TATCAGATTTTCCTGGACAAGGTGCGCGAGTATCGGCTGAAGAGTCCCAA
GGGAAAGCCCGTAGATCCTGGTCCGGAATTCGAGGCGGAGCTGAAGGAAG
TCACTGAGCGCCTGGCTCTGCAATACGGCGGCGGCGAGGGCGTGGATATG
CTCGAGTTTCCGAAATTCAAGTTGCCCGATATTGATATTGATCCCATTTC
GGTTGATGATCTACCAGAGAACCAACCAAAGCCTGAGAAAAAGAATAGAG
ATAAAGAAGTAAAGGCCAAAGAAAAGGGTGGGGAAAAAGAAGTGAAAGCC
AAAGATGGCAAGAAAGCTGACGAACCAAAGGGCAAGGATGAAAAGGACAA
GATAAAGGCAAGCTTTCTAGACC
BO16991.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12027-PA | 444 | CG12027-RA | 1..441 | 17..457 | 2205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:17:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12027-RA | 635 | CG12027-RA | 39..479 | 17..457 | 2205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:17:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5011800..5012095 | 312..17 | 1480 | 100 | Minus |
| 3L | 28110227 | 3L | 5011600..5011744 | 457..313 | 725 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 18:17:34 has no hits.
BO16991.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:01:05 Download gff for
BO16991.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12027-PA | 1..444 | 17..458 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:42:04 Download gff for
BO16991.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12027-RA | 39..479 | 17..457 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:14:37 Download gff for
BO16991.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12027-RA | 39..479 | 17..457 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:14:37 Download gff for
BO16991.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5011600..5011744 | 313..457 | 100 | <- | Minus |
| 3L | 5011800..5012095 | 17..312 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:42:04 Download gff for
BO16991.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5011600..5011744 | 313..457 | 100 | <- | Minus |
| arm_3L | 5011800..5012095 | 17..312 | 100 | | Minus |
BO16991.complete Sequence
475 bp assembled on 2006-10-11
GenBank Submission: FJ634004
> BO16991.complete
GAAGTTATCAGTCGACATGTTTAGCCGTTTCCTAAAACCAAGCCTAGTTT
TATGTAGGAGTGTGAGCAATACCGCATCCCTTCGCTACAAGGATCCCATT
TATCAGATTTTCCTGGACAAGGTGCGCGAGTATCGGCTGAAGAGTCCCAA
GGGAAAGCCCGTAGATCCTGGTCCGGAATTCGAGGCGGAGCTGAAGGAAG
TCACTGAGCGCCTGGCTCTGCAATACGGCGGCGGCGAGGGCGTGGATATG
CTCGAGTTTCCGAAATTCAAGTTGCCCGATATTGATATTGATCCCATTTC
GGTTGATGATCTACCAGAGAACCAACCAAAGCCTGAGAAAAAGAATAGAG
ATAAAGAAGTAAAGGCCAAAGAAAAGGGTGGGGAAAAAGAAGTGAAAGCC
AAAGATGGCAAGAAAGCTGACGAACCAAAGGGCAAGGATGAAAAGGACAA
GATAAAGGCAAGCTTTCTAGACCAT
BO16991.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:18:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12027-RA | 444 | CG12027-PA | 1..441 | 17..457 | 2205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:18:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12027-RA | 635 | CG12027-RA | 39..479 | 17..457 | 2205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:18:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5011800..5012095 | 312..17 | 1480 | 100 | Minus |
| 3L | 28110227 | 3L | 5011600..5011744 | 457..313 | 725 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:18:43 has no hits.
BO16991.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:06:33 Download gff for
BO16991.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12027-RA | 1..444 | 17..458 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:22:08 Download gff for
BO16991.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12027-RA | 20..460 | 17..457 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:25 Download gff for
BO16991.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12027-RA | 45..479 | 23..459 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:06:34 Download gff for
BO16991.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12027-RA | 20..460 | 17..457 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:15:40 Download gff for
BO16991.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12027-RA | 45..479 | 23..459 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:15:40 Download gff for
BO16991.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5011598..5011744 | 313..459 | 98 | <- | Minus |
| 3L | 5011800..5012089 | 23..312 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:25 Download gff for
BO16991.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5011598..5011744 | 313..459 | 98 | <- | Minus |
| arm_3L | 5011800..5012089 | 23..312 | 100 | | Minus |
BO16991.pep Sequence
Translation from 16 to 475
> BO16991.pep
MFSRFLKPSLVLCRSVSNTASLRYKDPIYQIFLDKVREYRLKSPKGKPVD
PGPEFEAELKEVTERLALQYGGGEGVDMLEFPKFKLPDIDIDPISVDDLP
ENQPKPEKKNRDKEVKAKEKGGEKEVKAKDGKKADEPKGKDEKDKIKASF
LDH
BO16991.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:03:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12027-PA | 147 | CG12027-PA | 1..147 | 1..147 | 766 | 100 | Plus |
| ATPsyn-Cf6-PB | 106 | CG4412-PB | 33..102 | 26..95 | 203 | 54.3 | Plus |
| ATPsyn-Cf6-PC | 106 | CG4412-PC | 33..102 | 26..95 | 203 | 54.3 | Plus |
| ATPsyn-Cf6-PA | 106 | CG4412-PA | 33..102 | 26..95 | 203 | 54.3 | Plus |
