Clone Sequence Records
BO16992.3prime Sequence
407 bp (407 high quality bases) assembled on 2006-10-13
> BO16992.3prime
ATGGTCTAGAAAGCTTGCCTTCTTAGATGATTGCTTCTTTTTAATGGTAT
CCACGATTGTCTTCAGCTCGTAGTACGAGTAGCGATAATAGCTGTAGTAC
TCGGGATTCTTGTACGTTTGCTTTTTTCCTGCCTTGGGTCCAAGTTGCTC
CTTTTTATCCACAATCCGATAGGTGGATGGGTGTATGAAATCGGGAGTAG
TGAAGGCAGTTGTGTTCAAAGTTTGGGGCGTACATCCTTCGGGGTGATCG
CGTACATTTCGCGGACTGGCGCCCAAACGCTTGAGGGTATTGACATCCTT
TGAGTAACCATAAGCGATCTTCAAGCGCCAAAACGTTGGGCGCCATAAAA
GCGGAATTCTTAAAGGAGCACGCATGGTGGGGCTGTATTTCATGTCGACT
GATAACT
BO16992.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12464-PA | 378 | CG12464-RA | 1..375 | 393..19 | 1875 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:17:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12464-RA | 506 | CG12464-RA | 54..428 | 393..19 | 1875 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:17:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13608751..13609125 | 19..393 | 1875 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:17:47 has no hits.
BO16992.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:01:06 Download gff for
BO16992.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12464-PA | 1..378 | 15..393 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:42:06 Download gff for
BO16992.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12464-RA | 54..431 | 15..393 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:14:38 Download gff for
BO16992.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12464-RA | 54..431 | 15..393 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:14:38 Download gff for
BO16992.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13608748..13609125 | 15..393 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:42:06 Download gff for
BO16992.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9496253..9496630 | 15..393 | 99 | | Plus |
BO16992.5prime Sequence
407 bp (407 high quality bases) assembled on 2006-10-13
> BO16992.5prime
GAAGTTATCAGTCGACATGAAATACAGCCCCACCATGCGTGCTCCTTTAA
GAATTCCGCTTTTATGGCGCCCAACGTTTTGGCGCTTGAAGATCGCTTAT
GGTTACTCAAAGGATGTCAATACCCTCAAGCGTTTGGGCGCCAGTCCGCG
AAATGTACGCGATCACCCCGAAGGATGTACGCCCCAAACTTTGAACACAA
CTGCCTTCACTACTCCCGATTTCATACACCCATCCACCTATCGGATTGTG
GATAAAAAGGAGCAACTTGGACCCAAGGCAGGAAAAAAGCAAACGTACAA
GAATCCCGAGTACTACAGCTATTATCGCTACTCGTACTACGAGCTGAAGA
CAATCGTGGATACCATTAAAAAGAAGCAATCATCTAAGAAGGCAAGCTTT
CTAGACC
BO16992.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12464-PA | 378 | CG12464-RA | 1..375 | 17..391 | 1875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:56:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12464-RA | 506 | CG12464-RA | 54..428 | 17..391 | 1875 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:56:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13608751..13609125 | 391..17 | 1875 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:56:46 has no hits.
BO16992.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:01:06 Download gff for
BO16992.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12464-PA | 1..378 | 17..395 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:21:25 Download gff for
BO16992.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12464-RA | 54..431 | 17..395 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:05:56 Download gff for
BO16992.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12464-RA | 54..431 | 17..395 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:05:56 Download gff for
BO16992.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13608748..13609125 | 17..395 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:21:25 Download gff for
BO16992.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9496253..9496630 | 17..395 | 99 | | Minus |
BO16992.complete Sequence
409 bp assembled on 2006-10-11
GenBank Submission: FJ634005
> BO16992.complete
GAAGTTATCAGTCGACATGAAATACAGCCCCACCATGCGTGCTCCTTTAA
GAATTCCGCTTTTATGGCGCCCAACGTTTTGGCGCTTGAAGATCGCTTAT
GGTTACTCAAAGGATGTCAATACCCTCAAGCGTTTGGGCGCCAGTCCGCG
AAATGTACGCGATCACCCCGAAGGATGTACGCCCCAAACTTTGAACACAA
CTGCCTTCACTACTCCCGATTTCATACACCCATCCACCTATCGGATTGTG
GATAAAAAGGAGCAACTTGGACCCAAGGCAGGAAAAAAGCAAACGTACAA
GAATCCCGAGTACTACAGCTATTATCGCTACTCGTACTACGAGCTGAAGA
CAATCGTGGATACCATTAAAAAGAAGCAATCATCTAAGAAGGCAAGCTTT
CTAGACCAT
BO16992.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:06:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12464-RA | 378 | CG12464-PA | 1..375 | 17..391 | 1875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:06:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12464-RA | 506 | CG12464-RA | 54..428 | 17..391 | 1875 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:06:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13608751..13609125 | 391..17 | 1875 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:06:31 has no hits.
BO16992.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:44 Download gff for
BO16992.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12464-RA | 1..378 | 17..395 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:20:46 Download gff for
BO16992.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12464-RA | 54..431 | 17..395 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:33:49 Download gff for
BO16992.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12464-RA | 54..428 | 17..393 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:44 Download gff for
BO16992.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12464-RA | 54..431 | 17..395 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:03:27 Download gff for
BO16992.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12464-RA | 54..428 | 17..393 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:03:27 Download gff for
BO16992.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13608749..13609125 | 17..393 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:33:49 Download gff for
BO16992.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9496254..9496630 | 17..393 | 99 | | Minus |
BO16992.pep Sequence
Translation from 16 to 409
> BO16992.pep
MKYSPTMRAPLRIPLLWRPTFWRLKIAYGYSKDVNTLKRLGASPRNVRDH
PEGCTPQTLNTTAFTTPDFIHPSTYRIVDKKEQLGPKAGKKQTYKNPEYY
SYYRYSYYELKTIVDTIKKKQSSKKASFLDH
BO16992.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12464-PA | 125 | CG12464-PA | 1..125 | 1..125 | 678 | 100 | Plus |
CG11815-PA | 283 | CG11815-PA | 31..100 | 43..110 | 140 | 41.4 | Plus |