Clone BO16992 Report

Search the DGRC for BO16992

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:169
Well:92
Vector:pDNR-Dual
Associated Gene/TranscriptCG12464-RA
Protein status:BO16992.pep: validated full length
Sequenced Size:409

Clone Sequence Records

BO16992.3prime Sequence

407 bp (407 high quality bases) assembled on 2006-10-13

> BO16992.3prime
ATGGTCTAGAAAGCTTGCCTTCTTAGATGATTGCTTCTTTTTAATGGTAT
CCACGATTGTCTTCAGCTCGTAGTACGAGTAGCGATAATAGCTGTAGTAC
TCGGGATTCTTGTACGTTTGCTTTTTTCCTGCCTTGGGTCCAAGTTGCTC
CTTTTTATCCACAATCCGATAGGTGGATGGGTGTATGAAATCGGGAGTAG
TGAAGGCAGTTGTGTTCAAAGTTTGGGGCGTACATCCTTCGGGGTGATCG
CGTACATTTCGCGGACTGGCGCCCAAACGCTTGAGGGTATTGACATCCTT
TGAGTAACCATAAGCGATCTTCAAGCGCCAAAACGTTGGGCGCCATAAAA
GCGGAATTCTTAAAGGAGCACGCATGGTGGGGCTGTATTTCATGTCGACT
GATAACT

BO16992.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG12464-PA 378 CG12464-RA 1..375 393..19 1875 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:17:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG12464-RA 506 CG12464-RA 54..428 393..19 1875 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:17:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13608751..13609125 19..393 1875 100 Plus
Blast to na_te.dros performed on 2015-02-02 18:17:47 has no hits.

BO16992.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:01:06 Download gff for BO16992.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12464-PA 1..378 15..393 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:42:06 Download gff for BO16992.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12464-RA 54..431 15..393 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:14:38 Download gff for BO16992.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12464-RA 54..431 15..393 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:14:38 Download gff for BO16992.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 13608748..13609125 15..393 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:42:06 Download gff for BO16992.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9496253..9496630 15..393 99   Plus

BO16992.5prime Sequence

407 bp (407 high quality bases) assembled on 2006-10-13

> BO16992.5prime
GAAGTTATCAGTCGACATGAAATACAGCCCCACCATGCGTGCTCCTTTAA
GAATTCCGCTTTTATGGCGCCCAACGTTTTGGCGCTTGAAGATCGCTTAT
GGTTACTCAAAGGATGTCAATACCCTCAAGCGTTTGGGCGCCAGTCCGCG
AAATGTACGCGATCACCCCGAAGGATGTACGCCCCAAACTTTGAACACAA
CTGCCTTCACTACTCCCGATTTCATACACCCATCCACCTATCGGATTGTG
GATAAAAAGGAGCAACTTGGACCCAAGGCAGGAAAAAAGCAAACGTACAA
GAATCCCGAGTACTACAGCTATTATCGCTACTCGTACTACGAGCTGAAGA
CAATCGTGGATACCATTAAAAAGAAGCAATCATCTAAGAAGGCAAGCTTT
CTAGACC

BO16992.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG12464-PA 378 CG12464-RA 1..375 17..391 1875 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:56:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG12464-RA 506 CG12464-RA 54..428 17..391 1875 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:56:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13608751..13609125 391..17 1875 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:56:46 has no hits.

BO16992.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:01:06 Download gff for BO16992.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12464-PA 1..378 17..395 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:21:25 Download gff for BO16992.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12464-RA 54..431 17..395 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:05:56 Download gff for BO16992.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12464-RA 54..431 17..395 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:05:56 Download gff for BO16992.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 13608748..13609125 17..395 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:21:25 Download gff for BO16992.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9496253..9496630 17..395 99   Minus

BO16992.complete Sequence

409 bp assembled on 2006-10-11

GenBank Submission: FJ634005

> BO16992.complete
GAAGTTATCAGTCGACATGAAATACAGCCCCACCATGCGTGCTCCTTTAA
GAATTCCGCTTTTATGGCGCCCAACGTTTTGGCGCTTGAAGATCGCTTAT
GGTTACTCAAAGGATGTCAATACCCTCAAGCGTTTGGGCGCCAGTCCGCG
AAATGTACGCGATCACCCCGAAGGATGTACGCCCCAAACTTTGAACACAA
CTGCCTTCACTACTCCCGATTTCATACACCCATCCACCTATCGGATTGTG
GATAAAAAGGAGCAACTTGGACCCAAGGCAGGAAAAAAGCAAACGTACAA
GAATCCCGAGTACTACAGCTATTATCGCTACTCGTACTACGAGCTGAAGA
CAATCGTGGATACCATTAAAAAGAAGCAATCATCTAAGAAGGCAAGCTTT
CTAGACCAT

BO16992.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:06:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG12464-RA 378 CG12464-PA 1..375 17..391 1875 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:06:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG12464-RA 506 CG12464-RA 54..428 17..391 1875 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:06:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13608751..13609125 391..17 1875 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:06:31 has no hits.

BO16992.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:44 Download gff for BO16992.complete
Subject Subject Range Query Range Percent Splice Strand
CG12464-RA 1..378 17..395 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:20:46 Download gff for BO16992.complete
Subject Subject Range Query Range Percent Splice Strand
CG12464-RA 54..431 17..395 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:33:49 Download gff for BO16992.complete
Subject Subject Range Query Range Percent Splice Strand
CG12464-RA 54..428 17..393 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:44 Download gff for BO16992.complete
Subject Subject Range Query Range Percent Splice Strand
CG12464-RA 54..431 17..395 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:03:27 Download gff for BO16992.complete
Subject Subject Range Query Range Percent Splice Strand
CG12464-RA 54..428 17..393 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:03:27 Download gff for BO16992.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13608749..13609125 17..393 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:33:49 Download gff for BO16992.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9496254..9496630 17..393 99   Minus

BO16992.pep Sequence

Translation from 16 to 409

> BO16992.pep
MKYSPTMRAPLRIPLLWRPTFWRLKIAYGYSKDVNTLKRLGASPRNVRDH
PEGCTPQTLNTTAFTTPDFIHPSTYRIVDKKEQLGPKAGKKQTYKNPEYY
SYYRYSYYELKTIVDTIKKKQSSKKASFLDH

BO16992.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG12464-PA 125 CG12464-PA 1..125 1..125 678 100 Plus
CG11815-PA 283 CG11815-PA 31..100 43..110 140 41.4 Plus