Clone Sequence Records
BO16994.3prime Sequence
479 bp (479 high quality bases) assembled on 2006-10-13
> BO16994.3prime
ATGGTCTAGAAAGCTTGCCTGGTCTTCTGTTATGTTTATATCAATAGAAT
CCGGCACATCTTTTGGATATTGCTGATTAAAATCAGACGCTGCAAGACTA
CGGTCATTCAGAACTTCTGTCTCGTCGGAACTCGGATCCAAGTCGAGAAA
CGCCTTGGAGATCATTTTGGGATTTAGTTCGGCATCCAGGTCGTTGTTCT
CAACTATTTTAATCAAAATTTCCAGGAGCAATTCACAACACTTCTTTTCG
TAGCCCATAACATTGGAAATGGCATTATGGATTGTGTCCTTCATTTTTAA
CAGCTCTTGATTCAAGTTTTCGATATCAACTAGAGCTTTCTGGGAACTGG
CCAAAGAAACAGCAATGCGACGTCCCAGATCCTCGTGCTCCAGGCGCATA
TTGGTGGCATTTTCCCGAAGACATTGGAGCCAAATAGAACGCTTGGCCAT
TCCCCTCATGTTCATGTCGACTGATAACT
BO16994.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13476-PB | 450 | CG13476-RB | 1..447 | 465..19 | 2210 | 99.7 | Minus |
CG13476-PA | 339 | CG13476-RA | 1..282 | 465..184 | 1385 | 99.6 | Minus |
CG13476-PA | 339 | CG13476-RA | 283..336 | 72..19 | 270 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:44:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13476-RB | 694 | CG13476-RB | 81..527 | 465..19 | 2220 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:43:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14705544..14705990 | 465..19 | 2220 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-03 06:44:00 has no hits.
BO16994.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:01:09 Download gff for
BO16994.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13476-PB | 1..450 | 15..465 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:31:10 Download gff for
BO16994.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13476-RB | 76..535 | 10..474 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:39:01 Download gff for
BO16994.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13476-RB | 76..535 | 10..474 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:39:01 Download gff for
BO16994.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14705539..14705998 | 10..474 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:31:10 Download gff for
BO16994.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14698639..14699098 | 10..474 | 98 | | Minus |
BO16994.5prime Sequence
479 bp (479 high quality bases) assembled on 2006-10-13
> BO16994.5prime
GAAGTTATCAGTCGACATGAACATGAGGGGAATGGCCAAGCGTTCTATTT
GGCTCCAATGTCTTCGGGAAAATGCCACCAATATGCGCCTGGAGCACGAG
GATCTGGGACGTCGCATTGCTGTTTCTTTGGCCAGTTCCCAGAAAGCTCT
AGTTGATATCGAAAACTTGAATCAAGAGCTGTTAAAAATGAAGGACACAA
TCCATAATGCCATTTCCAATGTTATGGGCTACGAAAAGAAGTGTTGTGAA
TTGCTCCTGGAAATTTTGATTAAAATAGTTGAGAACAACGACCTGGATGC
CGAACTAAATCCCAAAATGATCTCCAAGGCGTTTCTCGACTTGGATCCGA
GTTCCGACGAGACAGAAGTTCTGAATGACCGTAGTCTTGCAGCGTCTGAT
TTTAATCAGCAATATCCAAAAGATGTGCCGGATTCTATTGATATAAACAT
AACAGAAGACCAGGCAAGCTTTCTAGACC
BO16994.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13476-PB | 450 | CG13476-RB | 1..447 | 17..463 | 2210 | 99.7 | Plus |
CG13476-PA | 339 | CG13476-RA | 1..282 | 17..298 | 1385 | 99.6 | Plus |
CG13476-PA | 339 | CG13476-RA | 283..336 | 410..463 | 270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:12:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13476-RB | 694 | CG13476-RB | 81..527 | 17..463 | 2220 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:12:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14705544..14705990 | 17..463 | 2220 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:12:30 has no hits.
BO16994.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:01:09 Download gff for
BO16994.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13476-PB | 1..450 | 17..467 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:45:47 Download gff for
BO16994.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13476-RB | 76..535 | 8..472 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:34:53 Download gff for
BO16994.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13476-RB | 76..535 | 8..472 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:34:53 Download gff for
BO16994.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14705539..14705998 | 8..472 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:45:47 Download gff for
BO16994.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14698639..14699098 | 8..472 | 98 | | Plus |
BO16994.complete Sequence
481 bp assembled on 2006-10-11
GenBank Submission: FJ634006
> BO16994.complete
GAAGTTATCAGTCGACATGAACATGAGGGGAATGGCCAAGCGTTCTATTT
GGCTCCAATGTCTTCGGGAAAATGCCACCAATATGCGCCTGGAGCACGAG
GATCTGGGACGTCGCATTGCTGTTTCTTTGGCCAGTTCCCAGAAAGCTCT
AGTTGATATCGAAAACTTGAATCAAGAGCTGTTAAAAATGAAGGACACAA
TCCATAATGCCATTTCCAATGTTATGGGCTACGAAAAGAAGTGTTGTGAA
TTGCTCCTGGAAATTTTGATTAAAATAGTTGAGAACAACGACCTGGATGC
CGAACTAAATCCCAAAATGATCTCCAAGGCGTTTCTCGACTTGGATCCGA
GTTCCGACGAGACAGAAGTTCTGAATGACCGTAGTCTTGCAGCGTCTGAT
TTTAATCAGCAATATCCAAAAGATGTGCCGGATTCTATTGATATAAACAT
AACAGAAGACCAGGCAAGCTTTCTAGACCAT
BO16994.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:55:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13476-RB | 450 | CG13476-PB | 1..447 | 17..463 | 2220 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:55:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13476-RB | 694 | CG13476-RB | 81..527 | 17..463 | 2220 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:55:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14705544..14705990 | 17..463 | 2220 | 99.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:55:16 has no hits.
BO16994.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:06:37 Download gff for
BO16994.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13476-RB | 1..450 | 17..467 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:22:13 Download gff for
BO16994.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13476-RB | 58..517 | 8..472 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:42:56 Download gff for
BO16994.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13476-RB | 81..527 | 17..465 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:06:38 Download gff for
BO16994.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13476-RB | 58..517 | 8..472 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:55:50 Download gff for
BO16994.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13476-RB | 81..527 | 17..465 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:55:50 Download gff for
BO16994.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14705544..14705990 | 17..465 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:42:56 Download gff for
BO16994.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14698644..14699090 | 17..465 | 99 | | Plus |
BO16994.pep Sequence
Translation from 16 to 481
> BO16994.pep
MNMRGMAKRSIWLQCLRENATNMRLEHEDLGRRIAVSLASSQKALVDIEN
LNQELLKMKDTIHNAISNVMGYEKKCCELLLEILIKIVENNDLDAELNPK
MISKAFLDLDPSSDETEVLNDRSLAASDFNQQYPKDVPDSIDINITEDQA
SFLDH
BO16994.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:03:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13476-PB | 149 | CG13476-PB | 1..149 | 1..149 | 755 | 100 | Plus |