Clone BO16994 Report

Search the DGRC for BO16994

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:169
Well:94
Vector:pDNR-Dual
Associated Gene/TranscriptCG13476-RB
Protein status:BO16994.pep: validated full length
Sequenced Size:481

Clone Sequence Records

BO16994.3prime Sequence

479 bp (479 high quality bases) assembled on 2006-10-13

> BO16994.3prime
ATGGTCTAGAAAGCTTGCCTGGTCTTCTGTTATGTTTATATCAATAGAAT
CCGGCACATCTTTTGGATATTGCTGATTAAAATCAGACGCTGCAAGACTA
CGGTCATTCAGAACTTCTGTCTCGTCGGAACTCGGATCCAAGTCGAGAAA
CGCCTTGGAGATCATTTTGGGATTTAGTTCGGCATCCAGGTCGTTGTTCT
CAACTATTTTAATCAAAATTTCCAGGAGCAATTCACAACACTTCTTTTCG
TAGCCCATAACATTGGAAATGGCATTATGGATTGTGTCCTTCATTTTTAA
CAGCTCTTGATTCAAGTTTTCGATATCAACTAGAGCTTTCTGGGAACTGG
CCAAAGAAACAGCAATGCGACGTCCCAGATCCTCGTGCTCCAGGCGCATA
TTGGTGGCATTTTCCCGAAGACATTGGAGCCAAATAGAACGCTTGGCCAT
TCCCCTCATGTTCATGTCGACTGATAACT

BO16994.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG13476-PB 450 CG13476-RB 1..447 465..19 2210 99.7 Minus
CG13476-PA 339 CG13476-RA 1..282 465..184 1385 99.6 Minus
CG13476-PA 339 CG13476-RA 283..336 72..19 270 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:44:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG13476-RB 694 CG13476-RB 81..527 465..19 2220 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:43:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14705544..14705990 465..19 2220 99.8 Minus
Blast to na_te.dros performed on 2015-02-03 06:44:00 has no hits.

BO16994.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:01:09 Download gff for BO16994.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13476-PB 1..450 15..465 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:31:10 Download gff for BO16994.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13476-RB 76..535 10..474 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:39:01 Download gff for BO16994.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13476-RB 76..535 10..474 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:39:01 Download gff for BO16994.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 14705539..14705998 10..474 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:31:10 Download gff for BO16994.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14698639..14699098 10..474 98   Minus

BO16994.5prime Sequence

479 bp (479 high quality bases) assembled on 2006-10-13

> BO16994.5prime
GAAGTTATCAGTCGACATGAACATGAGGGGAATGGCCAAGCGTTCTATTT
GGCTCCAATGTCTTCGGGAAAATGCCACCAATATGCGCCTGGAGCACGAG
GATCTGGGACGTCGCATTGCTGTTTCTTTGGCCAGTTCCCAGAAAGCTCT
AGTTGATATCGAAAACTTGAATCAAGAGCTGTTAAAAATGAAGGACACAA
TCCATAATGCCATTTCCAATGTTATGGGCTACGAAAAGAAGTGTTGTGAA
TTGCTCCTGGAAATTTTGATTAAAATAGTTGAGAACAACGACCTGGATGC
CGAACTAAATCCCAAAATGATCTCCAAGGCGTTTCTCGACTTGGATCCGA
GTTCCGACGAGACAGAAGTTCTGAATGACCGTAGTCTTGCAGCGTCTGAT
TTTAATCAGCAATATCCAAAAGATGTGCCGGATTCTATTGATATAAACAT
AACAGAAGACCAGGCAAGCTTTCTAGACC

BO16994.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG13476-PB 450 CG13476-RB 1..447 17..463 2210 99.7 Plus
CG13476-PA 339 CG13476-RA 1..282 17..298 1385 99.6 Plus
CG13476-PA 339 CG13476-RA 283..336 410..463 270 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:12:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG13476-RB 694 CG13476-RB 81..527 17..463 2220 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:12:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14705544..14705990 17..463 2220 99.8 Plus
Blast to na_te.dros performed on 2015-02-12 11:12:30 has no hits.

BO16994.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:01:09 Download gff for BO16994.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13476-PB 1..450 17..467 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:45:47 Download gff for BO16994.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13476-RB 76..535 8..472 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:34:53 Download gff for BO16994.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13476-RB 76..535 8..472 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:34:53 Download gff for BO16994.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 14705539..14705998 8..472 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:45:47 Download gff for BO16994.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14698639..14699098 8..472 98   Plus

BO16994.complete Sequence

481 bp assembled on 2006-10-11

GenBank Submission: FJ634006

> BO16994.complete
GAAGTTATCAGTCGACATGAACATGAGGGGAATGGCCAAGCGTTCTATTT
GGCTCCAATGTCTTCGGGAAAATGCCACCAATATGCGCCTGGAGCACGAG
GATCTGGGACGTCGCATTGCTGTTTCTTTGGCCAGTTCCCAGAAAGCTCT
AGTTGATATCGAAAACTTGAATCAAGAGCTGTTAAAAATGAAGGACACAA
TCCATAATGCCATTTCCAATGTTATGGGCTACGAAAAGAAGTGTTGTGAA
TTGCTCCTGGAAATTTTGATTAAAATAGTTGAGAACAACGACCTGGATGC
CGAACTAAATCCCAAAATGATCTCCAAGGCGTTTCTCGACTTGGATCCGA
GTTCCGACGAGACAGAAGTTCTGAATGACCGTAGTCTTGCAGCGTCTGAT
TTTAATCAGCAATATCCAAAAGATGTGCCGGATTCTATTGATATAAACAT
AACAGAAGACCAGGCAAGCTTTCTAGACCAT

BO16994.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:55:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG13476-RB 450 CG13476-PB 1..447 17..463 2220 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:55:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG13476-RB 694 CG13476-RB 81..527 17..463 2220 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:55:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14705544..14705990 17..463 2220 99.8 Plus
Blast to na_te.dros performed on 2014-11-27 14:55:16 has no hits.

BO16994.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:06:37 Download gff for BO16994.complete
Subject Subject Range Query Range Percent Splice Strand
CG13476-RB 1..450 17..467 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:22:13 Download gff for BO16994.complete
Subject Subject Range Query Range Percent Splice Strand
CG13476-RB 58..517 8..472 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:42:56 Download gff for BO16994.complete
Subject Subject Range Query Range Percent Splice Strand
CG13476-RB 81..527 17..465 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:06:38 Download gff for BO16994.complete
Subject Subject Range Query Range Percent Splice Strand
CG13476-RB 58..517 8..472 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:55:50 Download gff for BO16994.complete
Subject Subject Range Query Range Percent Splice Strand
CG13476-RB 81..527 17..465 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:55:50 Download gff for BO16994.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14705544..14705990 17..465 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:42:56 Download gff for BO16994.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14698644..14699090 17..465 99   Plus

BO16994.pep Sequence

Translation from 16 to 481

> BO16994.pep
MNMRGMAKRSIWLQCLRENATNMRLEHEDLGRRIAVSLASSQKALVDIEN
LNQELLKMKDTIHNAISNVMGYEKKCCELLLEILIKIVENNDLDAELNPK
MISKAFLDLDPSSDETEVLNDRSLAASDFNQQYPKDVPDSIDINITEDQA
SFLDH

BO16994.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:03:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG13476-PB 149 CG13476-PB 1..149 1..149 755 100 Plus