Clone Sequence Records
BO16995.3prime Sequence
563 bp (563 high quality bases) assembled on 2006-10-13
> BO16995.3prime
ATGGTCTAGAAAGCTTGCTCGTACACTTCCGGATCCATAGCGGATTTCCC
TTTCGAACTGCTCGGCCTTCAAGGTGCCGTCTATACTCTCGCAATTCTTG
TTGAAAACGCTGTAGGCACTCATCTCGTTCCGTTTCTTTGGCTCCGTTCG
GGTGTTGAAGTAGATGCCAAAGAGGGCGGAAAACATGAGGAAAACCAATC
CAAAGCTTAGCTTTATGGCAATAACGTAGAGAGTTATCCAGAACAGCAGA
TAGACAGTCCAGAGGGTGTACTTTAGGCAGTTGTTTTCCTTGTGGTGATG
ATCTGTGGATCTGGTGGGCTGCTCCTCTGGCACCAATTCACTTTCACTGG
AGGTCACAGCCTCATCTTGTGAGTTTTCCGAGATAGCTTCGAACTTAGTA
GGTACCTGTTGTACCTCTATTGTGGTATCTTTATTAGCCCCGGTTCCCAA
CATCCAGAATCTCCGTAGTTTGTCCTTGAAGTTGTCTACCGTTTCCTTTC
TCCTTTTCTGAGCGCGATACTGTCGCAGCTGTTCTTGANAATCAGCCATG
TCGACTGATAACT
BO16995.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13663-PA | 534 | CG13663-RA | 1..531 | 549..19 | 2636 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:12:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13663-RA | 802 | CG13663-RA | 51..581 | 549..19 | 2644 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:12:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25214546..25214934 | 19..407 | 1945 | 100 | Plus |
| 3R | 32079331 | 3R | 25214992..25215138 | 403..549 | 724 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:12:38 has no hits.
BO16995.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:01:11 Download gff for
BO16995.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13663-PA | 1..534 | 18..549 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:45:49 Download gff for
BO16995.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13663-RA | 51..588 | 11..549 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:35:08 Download gff for
BO16995.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13663-RA | 51..588 | 11..549 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:35:08 Download gff for
BO16995.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25214539..25214932 | 11..405 | 98 | <- | Plus |
| 3R | 25214995..25215138 | 406..549 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:45:49 Download gff for
BO16995.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21040261..21040654 | 11..405 | 98 | <- | Plus |
| arm_3R | 21040717..21040860 | 406..549 | 99 | | Plus |
BO16995.5prime Sequence
563 bp (563 high quality bases) assembled on 2006-10-13
> BO16995.5prime
GAAGTTATCAGTCGACATGGCTGATTTTCAAGAACAGCTGCGACAGTATC
GCGCTCAGAAAAGGAGAAAGGAAACGGTAGACAACTTCAAGGACAAACTA
CGGAGATTCTGGATGTTGGGAACCGGGGCTAATAAAGATACCACAATAGA
GGTACAACAGGTACCTACTAAGTTCGAAGCTATCTCGGAAAACTCACAAG
ATGAGGCTGTGACCTCCAGTGAAAGTGAATTGGTGCCAGAGGAGCAGCCC
ACCAGATCCACAGATCATCACCACAAGGAAAACAACTGCCTAAAGTACAC
CCTCTGGACTGTCTATCTGCTGTTCTGGATAACTCTCTACGTTATTGCCA
TAAAGCTAAGCTTTGGATTGGTTTTCCTCATGTTTTCCGCCCTCTTTGGC
ATCTACTTCAACACCCGAACGGAGCCAAAGAAACGGAACGAGATGAGTGC
CTACAGCGTTTTCAACAAGAATTGCGAGAGTATAGACGGCACCTTGAAGG
CCGAGCAGTTCGAAAGGGAAATCCGCTATGGATCCGGAAGTGTACGAGCA
AGCTTTCTAGACC
BO16995.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13663-PA | 534 | CG13663-RA | 1..531 | 17..547 | 2655 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:57:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13663-RA | 802 | CG13663-RA | 51..581 | 17..547 | 2655 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:57:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25214546..25214934 | 547..159 | 1945 | 100 | Minus |
| 3R | 32079331 | 3R | 25214992..25215138 | 163..17 | 735 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:57:26 has no hits.
BO16995.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:01:11 Download gff for
BO16995.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13663-PA | 1..534 | 17..548 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:21:32 Download gff for
BO16995.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13663-RA | 51..588 | 17..555 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:06:01 Download gff for
BO16995.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13663-RA | 51..588 | 17..555 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:06:01 Download gff for
BO16995.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25214539..25214932 | 161..555 | 98 | <- | Minus |
| 3R | 25214995..25215138 | 17..160 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:21:32 Download gff for
BO16995.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21040261..21040654 | 161..555 | 98 | <- | Minus |
| arm_3R | 21040717..21040860 | 17..160 | 100 | | Minus |
BO16995.complete Sequence
565 bp assembled on 2006-10-11
GenBank Submission: FJ634007
> BO16995.complete
GAAGTTATCAGTCGACATGGCTGATTTTCAAGAACAGCTGCGACAGTATC
GCGCTCAGAAAAGGAGAAAGGAAACGGTAGACAACTTCAAGGACAAACTA
CGGAGATTCTGGATGTTGGGAACCGGGGCTAATAAAGATACCACAATAGA
GGTACAACAGGTACCTACTAAGTTCGAAGCTATCTCGGAAAACTCACAAG
ATGAGGCTGTGACCTCCAGTGAAAGTGAATTGGTGCCAGAGGAGCAGCCC
ACCAGATCCACAGATCATCACCACAAGGAAAACAACTGCCTAAAGTACAC
CCTCTGGACTGTCTATCTGCTGTTCTGGATAACTCTCTACGTTATTGCCA
TAAAGCTAAGCTTTGGATTGGTTTTCCTCATGTTTTCCGCCCTCTTTGGC
ATCTACTTCAACACCCGAACGGAGCCAAAGAAACGGAACGAGATGAGTGC
CTACAGCGTTTTCAACAAGAATTGCGAGAGTATAGACGGCACCTTGAAGG
CCGAGCAGTTCGAAAGGGAAATCCGCTATGGATCCGGAAGTGTACGAGCA
AGCTTTCTAGACCAT
BO16995.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:46:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13663-RA | 534 | CG13663-PA | 1..531 | 17..547 | 2655 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:46:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13663-RA | 802 | CG13663-RA | 51..581 | 17..547 | 2655 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:46:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25214546..25214934 | 547..159 | 1945 | 100 | Minus |
| 3R | 32079331 | 3R | 25214992..25215138 | 163..17 | 735 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:46:08 has no hits.
BO16995.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:08:55 Download gff for
BO16995.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13663-RA | 1..534 | 17..548 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:25:49 Download gff for
BO16995.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13663-RA | 51..588 | 17..555 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:53:27 Download gff for
BO16995.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13663-RA | 51..581 | 17..549 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:08:55 Download gff for
BO16995.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13663-RA | 51..588 | 17..555 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:53:50 Download gff for
BO16995.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13663-RA | 51..581 | 17..549 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:53:50 Download gff for
BO16995.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25214544..25214932 | 161..549 | 99 | <- | Minus |
| 3R | 25214995..25215138 | 17..160 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:53:27 Download gff for
BO16995.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21040266..21040654 | 161..549 | 99 | <- | Minus |
| arm_3R | 21040717..21040860 | 17..160 | 100 | | Minus |
BO16995.pep Sequence
Translation from 16 to 565
> BO16995.pep
MADFQEQLRQYRAQKRRKETVDNFKDKLRRFWMLGTGANKDTTIEVQQVP
TKFEAISENSQDEAVTSSESELVPEEQPTRSTDHHHKENNCLKYTLWTVY
LLFWITLYVIAIKLSFGLVFLMFSALFGIYFNTRTEPKKRNEMSAYSVFN
KNCESIDGTLKAEQFEREIRYGSGSVRASFLDH
BO16995.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:46:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13663-PA | 177 | CG13663-PA | 1..177 | 1..177 | 923 | 100 | Plus |
