Clone Sequence Records
BO17004.3prime Sequence
666 bp (566 high quality bases) assembled on 2006-10-13
> BO17004.3prime
ATGGTCTAGAAAGCTTGCCAAGTTTCCTCGCTTGGCTTGTTCAATTTCAA
TGGCCGTGAACAAGGACTTAAAGTTGCCAGCGCCAAATCCATTGTGATTG
TAGCGTTGGATAACTTCCAGGAAGAGGGTCGGTCTATCCTGGCAGTTCTT
TGTGAAGATCTGCAGCAGATATCCGTTCTCGTCGAAGTCAATCAAAATGT
TCAACTTCTTCAAGACCTCCATGTCCTCCTTGATCTTGGTGCGGCTGTGC
GAGAGCTGCTCCTGAAGGATCTCGTAGTACGAGGATGGGATGGTCAGGAA
CTCGGTTCCTCGAGCCTTTAGGTTGCTCACCGCCTCGATAATGTCATCCG
TATTAAGAGCAATGTGCTGGACACCACCGCCGCCGTAGTACTCCACGTAC
TCCTGGATCTGTGACTTCTTTTTCCCATTGGCTGGCTCATTGATCGGCAT
CTTCACCGTCTCCTCGTAGTTTGCCATCACGATGGACCGCAGGGCGGAGT
ATTCCGTGTGAATCTGCGAGTCATCCACGGACCAGAAGCGGTGGAACTGC
AGGATTCTCTCGTACCAGGAGGCCACGCTCTCCATCTGCAGATCCGGCTG
GTTGCCCACCACGTGATCAATGAAGTTCAGCTTGATGGAGGGCAATCCGT
TTAGAAGGACATCTTT
BO17004.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11796-PA | 1143 | CG11796-RA | 493..1140 | 666..19 | 3215 | 99.8 | Minus |
CG11796-PB | 885 | CG11796-RB | 235..882 | 666..19 | 3215 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:58:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11796-RB | 1518 | CG11796-RB | 808..1455 | 666..19 | 3225 | 99.8 | Minus |
CG11796-RA | 1301 | CG11796-RA | 591..1238 | 666..19 | 3225 | 99.8 | Minus |
CG5872-RB | 1866 | CG5872-RB | 1725..1796 | 19..90 | 360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:58:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20438364..20438940 | 90..666 | 2870 | 99.8 | Plus |
3L | 28110227 | 3L | 20438229..20438300 | 19..90 | 360 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:58:19 has no hits.
BO17004.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:01:15 Download gff for
BO17004.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11796-PB | 235..885 | 16..666 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:21:39 Download gff for
BO17004.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11796-RA | 591..1242 | 15..666 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:06:09 Download gff for
BO17004.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11796-RA | 591..1242 | 15..666 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:06:09 Download gff for
BO17004.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20438225..20438300 | 15..90 | 97 | <- | Plus |
3L | 20438365..20438940 | 91..666 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:21:39 Download gff for
BO17004.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20431325..20431400 | 15..90 | 97 | <- | Plus |
arm_3L | 20431465..20432040 | 91..666 | 99 | | Plus |
BO17004.5prime Sequence
682 bp (607 high quality bases) assembled on 2006-10-13
> BO17004.5prime
GAAGTTATCAGTCGACATGACCAGCTATACTGACAAAGGAACCAAACCTG
AAGCCGGCAAATTTCTAAGCTTTGATCACTTAACCTTCTACGTTGGCAAC
GCCAAGCAGGCGGCCAGCTACTATACCACTCGACTGGGCTTCGAACCACT
TGGCTATCAGGGATTAGAGACCGGGGAGCGACGCTTCGCCAAGCATGCCG
TCCGCCAGAACAAGATCGTCTTTGTGTTCGTCTCCGCCTACACGCCGGAT
GACGAGGAGCATGGACTCCACCTGATGCGCCACGGCGACGGTGTCAAGGA
TGTAGCCTTCGAAGTGGAGGATTTGAATGCCATTTTCACACTGGCCGTGT
CCCGTGGGGCCGAAGTGGTCCGCGACATCTGGGAGGAGAGCGATGATCAG
GGATTCGTGAGATTCGCTACCATCAAGACGTACGGCGACACTACCCACAC
TTTCGTGGAGCGCAATGGGTACGCTGGAGATTTCCTGCCTGGATTCCAGC
GGTCGCCCAAAGATGTCCTTCTAAACGGATTGCCCTCCACCAAGCTGAAC
TTCATTGATCACGTGGTGGGCAACCAGCCGGATCTGCAGATGGAGAGCGT
GGCCTCCTGNTACGAGAGAATCCTGCAGTTCCACCGCTTCTGGGTCGTGG
ATGACTCGCAGATTCACACGGAATACTCCGCC
BO17004.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11796-PA | 1143 | CG11796-RA | 1..666 | 17..682 | 3261 | 99.5 | Plus |
CG11796-PB | 885 | CG11796-RB | 1..408 | 275..682 | 1971 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:14:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11796-RA | 1301 | CG11796-RA | 99..764 | 17..682 | 3289 | 99.5 | Plus |
CG11796-RB | 1518 | CG11796-RB | 318..981 | 19..682 | 3279 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:14:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20439077..20439460 | 430..47 | 1920 | 100 | Minus |
3L | 28110227 | 3L | 20438767..20439019 | 682..430 | 1224 | 98.8 | Minus |
Blast to na_te.dros performed on 2015-01-31 10:14:21 has no hits.
BO17004.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:01:15 Download gff for
BO17004.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11796-PA | 1..666 | 17..682 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:35:29 Download gff for
BO17004.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11796-RA | 92..764 | 10..682 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:44:43 Download gff for
BO17004.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11796-RA | 92..764 | 10..682 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:44:43 Download gff for
BO17004.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20438767..20439018 | 431..682 | 98 | <- | Minus |
3L | 20439077..20439460 | 47..430 | 100 | <- | Minus |
3L | 20439528..20439558 | 15..46 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:35:29 Download gff for
BO17004.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20431867..20432118 | 431..682 | 98 | <- | Minus |
arm_3L | 20432177..20432560 | 47..430 | 100 | <- | Minus |
arm_3L | 20432628..20432658 | 15..46 | 96 | | Minus |
BO17004.complete Sequence
1174 bp assembled on 2006-10-11
GenBank Submission: FJ634008
> BO17004.complete
GAAGTTATCAGTCGACATGACCAGCTATACTGACAAAGGAACCAAACCTG
AAGCCGGCAAATTTCTAAGCTTTGATCACTTAACCTTCTACGTTGGCAAC
GCCAAGCAGGCGGCCAGCTACTATACCACTCGACTGGGCTTCGAACCACT
TGGCTATCAGGGATTAGAGACCGGGGAGCGACGCTTCGCCAAGCATGCCG
TCCGCCAGAACAAGATCGTCTTTGTGTTCGTCTCCGCCTACACGCCGGAT
GACGAGGAGCATGGACTCCACCTGATGCGCCACGGCGACGGTGTCAAGGA
TGTAGCCTTCGAAGTGGAGGATTTGAATGCCATTTTCACACTGGCCGTGT
CCCGTGGGGCCGAAGTGGTCCGCGACATCTGGGAGGAGAGCGATGATCAG
GGATTCGTGAGATTCGCTACCATCAAGACGTACGGCGACACTACCCACAC
TTTCGTGGAGCGCAATGGGTACGCTGGAGATTTCCTGCCTGGATTCCAGC
GGTCGCCCAAAGATGTCCTTCTAAACGGATTGCCCTCCACCAAGCTGAAC
TTCATTGATCACGTGGTGGGCAACCAGCCGGATCTGCAGATGGAGAGCGT
GGCCTCCTGGTACGAGAGAATCCTGCAGTTCCACCGCTTCTGGTCCGTGG
ATGACTCGCAGATTCACACGGAATACTCCGCCCTGCGGTCCATCGTGATG
GCAAACTACGAGGAGACGGTGAAGATGCCGATCAATGAGCCAGCCAATGG
GAAAAAGAAGTCACAGATCCAGGAGTACGTGGAGTACTACGGCGGCGGTG
GTGTCCAGCACATTGCTCTTAATACGGATGACATTATCGAGGCGGTGAGC
AACCTAAAGGCTCGAGGAACCGAGTTCCTGACCATCCCATCCTCGTACTA
CGAGATCCTTCAGGAGCAGCTCTCGCACAGCCGCACCAAGATCAAGGAGG
ACATGGAGGTCTTGAAGAAGTTGAACATTTTGATTGACTTCGACGAGAAC
GGATATCTGCTGCAGATCTTCACAAAGAACTGCCAGGATAGACCGACCCT
CTTCCTGGAAGTTATCCAACGCTACAATCACAATGGATTTGGCGCTGGCA
ACTTTAAGTCCTTGTTCACGGCCATTGAAATTGAACAAGCCAAGCGAGGA
AACTTGGCAAGCTTTCTAGACCAT
BO17004.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:17:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11796-RA | 1143 | CG11796-PA | 1..1140 | 17..1156 | 5700 | 100 | Plus |
CG11796-RB | 885 | CG11796-PB | 1..882 | 275..1156 | 4410 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:17:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11796-RA | 1301 | CG11796-RA | 99..1238 | 17..1156 | 5700 | 100 | Plus |
CG11796-RB | 1518 | CG11796-RB | 318..1455 | 19..1156 | 5690 | 100 | Plus |
CG5872-RB | 1866 | CG5872-RB | 1725..1796 | 1156..1085 | 360 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:17:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20438364..20439019 | 1085..430 | 3280 | 100 | Minus |
3L | 28110227 | 3L | 20439077..20439460 | 430..47 | 1920 | 100 | Minus |
3L | 28110227 | 3L | 20438229..20438300 | 1156..1085 | 360 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:17:09 has no hits.
BO17004.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:25:40 Download gff for
BO17004.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11796-RA | 1..1143 | 17..1159 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:45:55 Download gff for
BO17004.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11796-RA | 88..1238 | 10..1160 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:45:03 Download gff for
BO17004.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11796-RA | 99..1238 | 17..1158 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:25:40 Download gff for
BO17004.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11796-RA | 88..1238 | 10..1160 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:49:51 Download gff for
BO17004.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11796-RA | 99..1238 | 17..1158 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:49:51 Download gff for
BO17004.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20438226..20438300 | 1085..1158 | 97 | <- | Minus |
3L | 20438365..20439018 | 431..1084 | 100 | <- | Minus |
3L | 20439077..20439460 | 47..430 | 100 | <- | Minus |
3L | 20439528..20439556 | 17..46 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:45:03 Download gff for
BO17004.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20431326..20431400 | 1085..1158 | 97 | <- | Minus |
arm_3L | 20431465..20432118 | 431..1084 | 100 | <- | Minus |
arm_3L | 20432177..20432560 | 47..430 | 100 | <- | Minus |
arm_3L | 20432628..20432656 | 17..46 | 96 | | Minus |
BO17004.pep Sequence
Translation from 16 to 1174
> BO17004.pep
MTSYTDKGTKPEAGKFLSFDHLTFYVGNAKQAASYYTTRLGFEPLGYQGL
ETGERRFAKHAVRQNKIVFVFVSAYTPDDEEHGLHLMRHGDGVKDVAFEV
EDLNAIFTLAVSRGAEVVRDIWEESDDQGFVRFATIKTYGDTTHTFVERN
GYAGDFLPGFQRSPKDVLLNGLPSTKLNFIDHVVGNQPDLQMESVASWYE
RILQFHRFWSVDDSQIHTEYSALRSIVMANYEETVKMPINEPANGKKKSQ
IQEYVEYYGGGGVQHIALNTDDIIEAVSNLKARGTEFLTIPSSYYEILQE
QLSHSRTKIKEDMEVLKKLNILIDFDENGYLLQIFTKNCQDRPTLFLEVI
QRYNHNGFGAGNFKSLFTAIEIEQAKRGNLASFLDH
BO17004.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:56:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11796-PA | 380 | CG11796-PA | 1..380 | 1..380 | 1989 | 100 | Plus |
CG11796-PB | 294 | CG11796-PB | 1..294 | 87..380 | 1532 | 100 | Plus |