Clone BO17004 Report

Search the DGRC for BO17004

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:170
Well:4
Vector:pDNR-Dual
Associated Gene/TranscriptCG11796-RA
Protein status:BO17004.pep: validated full length
Sequenced Size:1174

Clone Sequence Records

BO17004.3prime Sequence

666 bp (566 high quality bases) assembled on 2006-10-13

> BO17004.3prime
ATGGTCTAGAAAGCTTGCCAAGTTTCCTCGCTTGGCTTGTTCAATTTCAA
TGGCCGTGAACAAGGACTTAAAGTTGCCAGCGCCAAATCCATTGTGATTG
TAGCGTTGGATAACTTCCAGGAAGAGGGTCGGTCTATCCTGGCAGTTCTT
TGTGAAGATCTGCAGCAGATATCCGTTCTCGTCGAAGTCAATCAAAATGT
TCAACTTCTTCAAGACCTCCATGTCCTCCTTGATCTTGGTGCGGCTGTGC
GAGAGCTGCTCCTGAAGGATCTCGTAGTACGAGGATGGGATGGTCAGGAA
CTCGGTTCCTCGAGCCTTTAGGTTGCTCACCGCCTCGATAATGTCATCCG
TATTAAGAGCAATGTGCTGGACACCACCGCCGCCGTAGTACTCCACGTAC
TCCTGGATCTGTGACTTCTTTTTCCCATTGGCTGGCTCATTGATCGGCAT
CTTCACCGTCTCCTCGTAGTTTGCCATCACGATGGACCGCAGGGCGGAGT
ATTCCGTGTGAATCTGCGAGTCATCCACGGACCAGAAGCGGTGGAACTGC
AGGATTCTCTCGTACCAGGAGGCCACGCTCTCCATCTGCAGATCCGGCTG
GTTGCCCACCACGTGATCAATGAAGTTCAGCTTGATGGAGGGCAATCCGT
TTAGAAGGACATCTTT

BO17004.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG11796-PA 1143 CG11796-RA 493..1140 666..19 3215 99.8 Minus
CG11796-PB 885 CG11796-RB 235..882 666..19 3215 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:58:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG11796-RB 1518 CG11796-RB 808..1455 666..19 3225 99.8 Minus
CG11796-RA 1301 CG11796-RA 591..1238 666..19 3225 99.8 Minus
CG5872-RB 1866 CG5872-RB 1725..1796 19..90 360 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:58:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20438364..20438940 90..666 2870 99.8 Plus
3L 28110227 3L 20438229..20438300 19..90 360 100 Plus
Blast to na_te.dros performed on 2015-02-10 16:58:19 has no hits.

BO17004.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:01:15 Download gff for BO17004.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11796-PB 235..885 16..666 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:21:39 Download gff for BO17004.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11796-RA 591..1242 15..666 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:06:09 Download gff for BO17004.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11796-RA 591..1242 15..666 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:06:09 Download gff for BO17004.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 20438225..20438300 15..90 97 <- Plus
3L 20438365..20438940 91..666 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:21:39 Download gff for BO17004.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20431325..20431400 15..90 97 <- Plus
arm_3L 20431465..20432040 91..666 99   Plus

BO17004.5prime Sequence

682 bp (607 high quality bases) assembled on 2006-10-13

> BO17004.5prime
GAAGTTATCAGTCGACATGACCAGCTATACTGACAAAGGAACCAAACCTG
AAGCCGGCAAATTTCTAAGCTTTGATCACTTAACCTTCTACGTTGGCAAC
GCCAAGCAGGCGGCCAGCTACTATACCACTCGACTGGGCTTCGAACCACT
TGGCTATCAGGGATTAGAGACCGGGGAGCGACGCTTCGCCAAGCATGCCG
TCCGCCAGAACAAGATCGTCTTTGTGTTCGTCTCCGCCTACACGCCGGAT
GACGAGGAGCATGGACTCCACCTGATGCGCCACGGCGACGGTGTCAAGGA
TGTAGCCTTCGAAGTGGAGGATTTGAATGCCATTTTCACACTGGCCGTGT
CCCGTGGGGCCGAAGTGGTCCGCGACATCTGGGAGGAGAGCGATGATCAG
GGATTCGTGAGATTCGCTACCATCAAGACGTACGGCGACACTACCCACAC
TTTCGTGGAGCGCAATGGGTACGCTGGAGATTTCCTGCCTGGATTCCAGC
GGTCGCCCAAAGATGTCCTTCTAAACGGATTGCCCTCCACCAAGCTGAAC
TTCATTGATCACGTGGTGGGCAACCAGCCGGATCTGCAGATGGAGAGCGT
GGCCTCCTGNTACGAGAGAATCCTGCAGTTCCACCGCTTCTGGGTCGTGG
ATGACTCGCAGATTCACACGGAATACTCCGCC

BO17004.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG11796-PA 1143 CG11796-RA 1..666 17..682 3261 99.5 Plus
CG11796-PB 885 CG11796-RB 1..408 275..682 1971 99.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:14:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG11796-RA 1301 CG11796-RA 99..764 17..682 3289 99.5 Plus
CG11796-RB 1518 CG11796-RB 318..981 19..682 3279 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:14:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20439077..20439460 430..47 1920 100 Minus
3L 28110227 3L 20438767..20439019 682..430 1224 98.8 Minus
Blast to na_te.dros performed on 2015-01-31 10:14:21 has no hits.

BO17004.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:01:15 Download gff for BO17004.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11796-PA 1..666 17..682 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:35:29 Download gff for BO17004.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11796-RA 92..764 10..682 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:44:43 Download gff for BO17004.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11796-RA 92..764 10..682 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:44:43 Download gff for BO17004.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20438767..20439018 431..682 98 <- Minus
3L 20439077..20439460 47..430 100 <- Minus
3L 20439528..20439558 15..46 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:35:29 Download gff for BO17004.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20431867..20432118 431..682 98 <- Minus
arm_3L 20432177..20432560 47..430 100 <- Minus
arm_3L 20432628..20432658 15..46 96   Minus

BO17004.complete Sequence

1174 bp assembled on 2006-10-11

GenBank Submission: FJ634008

> BO17004.complete
GAAGTTATCAGTCGACATGACCAGCTATACTGACAAAGGAACCAAACCTG
AAGCCGGCAAATTTCTAAGCTTTGATCACTTAACCTTCTACGTTGGCAAC
GCCAAGCAGGCGGCCAGCTACTATACCACTCGACTGGGCTTCGAACCACT
TGGCTATCAGGGATTAGAGACCGGGGAGCGACGCTTCGCCAAGCATGCCG
TCCGCCAGAACAAGATCGTCTTTGTGTTCGTCTCCGCCTACACGCCGGAT
GACGAGGAGCATGGACTCCACCTGATGCGCCACGGCGACGGTGTCAAGGA
TGTAGCCTTCGAAGTGGAGGATTTGAATGCCATTTTCACACTGGCCGTGT
CCCGTGGGGCCGAAGTGGTCCGCGACATCTGGGAGGAGAGCGATGATCAG
GGATTCGTGAGATTCGCTACCATCAAGACGTACGGCGACACTACCCACAC
TTTCGTGGAGCGCAATGGGTACGCTGGAGATTTCCTGCCTGGATTCCAGC
GGTCGCCCAAAGATGTCCTTCTAAACGGATTGCCCTCCACCAAGCTGAAC
TTCATTGATCACGTGGTGGGCAACCAGCCGGATCTGCAGATGGAGAGCGT
GGCCTCCTGGTACGAGAGAATCCTGCAGTTCCACCGCTTCTGGTCCGTGG
ATGACTCGCAGATTCACACGGAATACTCCGCCCTGCGGTCCATCGTGATG
GCAAACTACGAGGAGACGGTGAAGATGCCGATCAATGAGCCAGCCAATGG
GAAAAAGAAGTCACAGATCCAGGAGTACGTGGAGTACTACGGCGGCGGTG
GTGTCCAGCACATTGCTCTTAATACGGATGACATTATCGAGGCGGTGAGC
AACCTAAAGGCTCGAGGAACCGAGTTCCTGACCATCCCATCCTCGTACTA
CGAGATCCTTCAGGAGCAGCTCTCGCACAGCCGCACCAAGATCAAGGAGG
ACATGGAGGTCTTGAAGAAGTTGAACATTTTGATTGACTTCGACGAGAAC
GGATATCTGCTGCAGATCTTCACAAAGAACTGCCAGGATAGACCGACCCT
CTTCCTGGAAGTTATCCAACGCTACAATCACAATGGATTTGGCGCTGGCA
ACTTTAAGTCCTTGTTCACGGCCATTGAAATTGAACAAGCCAAGCGAGGA
AACTTGGCAAGCTTTCTAGACCAT

BO17004.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:17:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG11796-RA 1143 CG11796-PA 1..1140 17..1156 5700 100 Plus
CG11796-RB 885 CG11796-PB 1..882 275..1156 4410 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:17:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG11796-RA 1301 CG11796-RA 99..1238 17..1156 5700 100 Plus
CG11796-RB 1518 CG11796-RB 318..1455 19..1156 5690 100 Plus
CG5872-RB 1866 CG5872-RB 1725..1796 1156..1085 360 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:17:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20438364..20439019 1085..430 3280 100 Minus
3L 28110227 3L 20439077..20439460 430..47 1920 100 Minus
3L 28110227 3L 20438229..20438300 1156..1085 360 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:17:09 has no hits.

BO17004.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:25:40 Download gff for BO17004.complete
Subject Subject Range Query Range Percent Splice Strand
CG11796-RA 1..1143 17..1159 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:45:55 Download gff for BO17004.complete
Subject Subject Range Query Range Percent Splice Strand
CG11796-RA 88..1238 10..1160 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:45:03 Download gff for BO17004.complete
Subject Subject Range Query Range Percent Splice Strand
CG11796-RA 99..1238 17..1158 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:25:40 Download gff for BO17004.complete
Subject Subject Range Query Range Percent Splice Strand
CG11796-RA 88..1238 10..1160 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:49:51 Download gff for BO17004.complete
Subject Subject Range Query Range Percent Splice Strand
CG11796-RA 99..1238 17..1158 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:49:51 Download gff for BO17004.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20438226..20438300 1085..1158 97 <- Minus
3L 20438365..20439018 431..1084 100 <- Minus
3L 20439077..20439460 47..430 100 <- Minus
3L 20439528..20439556 17..46 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:45:03 Download gff for BO17004.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20431326..20431400 1085..1158 97 <- Minus
arm_3L 20431465..20432118 431..1084 100 <- Minus
arm_3L 20432177..20432560 47..430 100 <- Minus
arm_3L 20432628..20432656 17..46 96   Minus

BO17004.pep Sequence

Translation from 16 to 1174

> BO17004.pep
MTSYTDKGTKPEAGKFLSFDHLTFYVGNAKQAASYYTTRLGFEPLGYQGL
ETGERRFAKHAVRQNKIVFVFVSAYTPDDEEHGLHLMRHGDGVKDVAFEV
EDLNAIFTLAVSRGAEVVRDIWEESDDQGFVRFATIKTYGDTTHTFVERN
GYAGDFLPGFQRSPKDVLLNGLPSTKLNFIDHVVGNQPDLQMESVASWYE
RILQFHRFWSVDDSQIHTEYSALRSIVMANYEETVKMPINEPANGKKKSQ
IQEYVEYYGGGGVQHIALNTDDIIEAVSNLKARGTEFLTIPSSYYEILQE
QLSHSRTKIKEDMEVLKKLNILIDFDENGYLLQIFTKNCQDRPTLFLEVI
QRYNHNGFGAGNFKSLFTAIEIEQAKRGNLASFLDH

BO17004.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:56:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG11796-PA 380 CG11796-PA 1..380 1..380 1989 100 Plus
CG11796-PB 294 CG11796-PB 1..294 87..380 1532 100 Plus