Clone Sequence Records
BO17005.5prime Sequence
200 bp (200 high quality bases) assembled on 2006-10-13
> BO17005.5prime
GAAGTTATCAGTCGACATGGAAACCTTGCAGTTATCGATTCGTCTCGCTC
ATTGCGCAATGAAAAAAATGCAGCGGGGGCGGAGGATACGAGAGAGCCTC
TCTCTTTGTGAGACACCTGCAGCGATAGGAAATGCAAATCCGCCTTCCAC
TTTCCAGCTCGAAAGTTCAAAGTTCACATGCAACGCAAGCTTTCTAGACC
BO17005.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30055-PA | 171 | CG30055-RA | 1..168 | 17..184 | 840 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-06 10:28:38 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:28:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12590064..12590233 | 15..184 | 850 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 10:28:35 has no hits.
BO17005.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:01:17 Download gff for
BO17005.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30055-PA | 1..171 | 17..188 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:26:42 Download gff for
BO17005.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12590064..12590243 | 15..196 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:26:42 Download gff for
BO17005.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12590064..12590243 | 15..196 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:42:02 Download gff for
BO17005.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8477569..8477748 | 15..196 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:42:02 Download gff for
BO17005.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8477569..8477748 | 15..196 | 97 | | Plus |
BO17005.3prime Sequence
200 bp (200 high quality bases) assembled on 2006-10-13
> BO17005.3prime
ATGGTCTAGAAAGCTTGCGTTGCATGTGAACTTTGAACTTTCGAGCTGGA
AAGTGGAAGGCGGATTTGCATTTCCTATCGCTGCAGGTGTCTCACAAAGA
GAGAGGCTCTCTCGTATCCTCCGCCCCCGCTGCATTTTTTTCATTGCGCA
ATGAGCGAGACGAATCGATAACTGCAAGGTTTCCATGTCGACTGATAACT
BO17005.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30055-PA | 171 | CG30055-RA | 1..168 | 186..19 | 840 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-10 16:26:10 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:26:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12590064..12590233 | 188..19 | 850 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:26:05 has no hits.
BO17005.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:01:17 Download gff for
BO17005.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30055-PA | 1..171 | 15..186 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:46:56 Download gff for
BO17005.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12590064..12590243 | 7..188 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:46:56 Download gff for
BO17005.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12590064..12590243 | 7..188 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:13:47 Download gff for
BO17005.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8477569..8477748 | 7..188 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:13:47 Download gff for
BO17005.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8477569..8477748 | 7..188 | 97 | | Minus |
BO17005.complete Sequence
202 bp assembled on 2006-10-11
GenBank Submission: FJ634009
> BO17005.complete
GAAGTTATCAGTCGACATGGAAACCTTGCAGTTATCGATTCGTCTCGCTC
ATTGCGCAATGAAAAAAATGCAGCGGGGGCGGAGGATACGAGAGAGCCTC
TCTCTTTGTGAGACACCTGCAGCGATAGGAAATGCAAATCCGCCTTCCAC
TTTCCAGCTCGAAAGTTCAAAGTTCACATGCAACGCAAGCTTTCTAGACC
AT
BO17005.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-27 07:22:05 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-27 07:22:06 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:22:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12590064..12590233 | 15..184 | 850 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:22:04 has no hits.
BO17005.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:57:50 Download gff for
BO17005.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30055-RA | 1..171 | 17..188 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:30:21 Download gff for
BO17005.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30055-RA | 762..941 | 15..196 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:57:50 Download gff for
BO17005.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30055-RA | 762..941 | 15..196 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:09:12 Download gff for
BO17005.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12590066..12590233 | 17..186 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:09:12 Download gff for
BO17005.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12590066..12590233 | 17..186 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:13:16 Download gff for
BO17005.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8477571..8477738 | 17..186 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:13:16 Download gff for
BO17005.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8477571..8477738 | 17..186 | 98 | | Plus |
BO17005.pep Sequence
Translation from 16 to 202
> BO17005.pep
METLQLSIRLAHCAMKKMQRGRRIRESLSLCETPAAIGNANPPSTFQLES
SKFTCNASFLDH
Sequence BO17005.pep has no blast hits.