Clone Sequence Records
BO17009.3prime Sequence
269 bp (269 high quality bases) assembled on 2006-10-13
> BO17009.3prime
ATGGTCTAGAAAGCTTGCGCCATTCTCACATTGATGGCCCTCGCAGTTGC
CCCAAAATATGCAGTTCCCGACGCCACTGTAGCATATCAGGGATACGGCT
GTGAGGAATACGAGGCTGCAGATGGTGCAGGGCTTTCGCTCCAGGAAGAA
TCCGACCAGGTAGAGGACTATGAACATCACGTGCGTTTCCATCAGGGCCG
GATTCGAGGGTTTCGGTATCAGTAGTACGGGCAGCAGGCATTGTAGGCAA
TACATGTCGACTGATAACT
BO17009.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4867-PA | 240 | bc10-RA | 1..237 | 255..19 | 1185 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:49:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bc10-RA | 1380 | CG4867-RA | 240..476 | 255..19 | 1185 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:49:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5565625..5565861 | 255..19 | 1185 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:49:28 has no hits.
BO17009.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:01:21 Download gff for
BO17009.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4867-PA | 1..240 | 18..255 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:43:06 Download gff for
BO17009.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bc10-RA | 232..476 | 19..263 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:54:31 Download gff for
BO17009.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bc10-RA | 232..476 | 19..263 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:54:31 Download gff for
BO17009.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5565617..5565861 | 19..263 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:43:06 Download gff for
BO17009.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5558717..5558961 | 19..263 | 98 | | Minus |
BO17009.5prime Sequence
269 bp (269 high quality bases) assembled on 2006-10-13
> BO17009.5prime
GAAGTTATCAGTCGACATGTATTGCCTACAATGCCTGCTGCCCGTACTAC
TGATACCGAAACCCTCGAATCCGGCCCTGATGGAAACGCACGTGATGTTC
ATAGTCCTCTACCTGGTCGGATTCTTCCTGGAGCGAAAGCCCTGCACCAT
CTGCAGCCTCGTATTCCTCACAGCCGTATCCCTGATATGCTACAGTGGCG
TCGGGAACTGCATATTTTGGGGCAACTGCGAGGGCCATCAATGTGAGAAT
GGCGCAAGCTTTCTAGACC
BO17009.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4867-PA | 240 | bc10-RA | 1..237 | 17..253 | 1185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:56:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bc10-RA | 1380 | CG4867-RA | 240..476 | 17..253 | 1185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:56:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5565625..5565861 | 17..253 | 1185 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 17:56:19 has no hits.
BO17009.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:01:22 Download gff for
BO17009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4867-PA | 1..240 | 17..254 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:52:08 Download gff for
BO17009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bc10-RA | 232..476 | 9..253 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:06:38 Download gff for
BO17009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bc10-RA | 232..476 | 9..253 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:06:38 Download gff for
BO17009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5565617..5565861 | 9..253 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:52:08 Download gff for
BO17009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5558717..5558961 | 9..253 | 98 | | Plus |
BO17009.complete Sequence
271 bp assembled on 2006-10-11
GenBank Submission: FJ634011
> BO17009.complete
GAAGTTATCAGTCGACATGTATTGCCTACAATGCCTGCTGCCCGTACTAC
TGATACCGAAACCCTCGAATCCGGCCCTGATGGAAACGCACGTGATGTTC
ATAGTCCTCTACCTGGTCGGATTCTTCCTGGAGCGAAAGCCCTGCACCAT
CTGCAGCCTCGTATTCCTCACAGCCGTATCCCTGATATGCTACAGTGGCG
TCGGGAACTGCATATTTTGGGGCAACTGCGAGGGCCATCAATGTGAGAAT
GGCGCAAGCTTTCTAGACCAT
BO17009.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:52:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bc10-RA | 240 | CG4867-PA | 1..237 | 17..253 | 1185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:52:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bc10-RA | 1380 | CG4867-RA | 240..476 | 17..253 | 1185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:52:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5565625..5565861 | 17..253 | 1185 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:52:39 has no hits.
BO17009.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:43:20 Download gff for
BO17009.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bc10-RA | 1..240 | 17..254 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:54:55 Download gff for
BO17009.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bc10-RA | 229..473 | 9..253 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:40:29 Download gff for
BO17009.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bc10-RA | 240..476 | 17..255 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:43:20 Download gff for
BO17009.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bc10-RA | 229..473 | 9..253 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:10:07 Download gff for
BO17009.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bc10-RA | 240..476 | 17..255 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:10:07 Download gff for
BO17009.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5565625..5565861 | 17..255 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:40:29 Download gff for
BO17009.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5558725..5558961 | 17..255 | 99 | | Plus |
BO17009.pep Sequence
Translation from 16 to 271
> BO17009.pep
MYCLQCLLPVLLIPKPSNPALMETHVMFIVLYLVGFFLERKPCTICSLVF
LTAVSLICYSGVGNCIFWGNCEGHQCENGASFLDH
BO17009.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:53:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bc10-PA | 79 | CG4867-PA | 1..79 | 1..79 | 440 | 100 | Plus |
