Clone Sequence Records
BO17014.3prime Sequence
785 bp (653 high quality bases) assembled on 2006-10-13
> BO17014.3prime
ATGGTCTAGAAAGCTTGCTAGCTTAAACTTGATGCTTCGCAGAATGGGAA
ATTTTTCGCCAGCACACTGACCACGAAAATCATCCATGGACAGGTCGTGG
AAGGCCACTCCGCCCAATCCTTGGGCATGCACAAATCCGGCCTTAATGGC
CGCCGTCAAGGGATCCTCGTAGCCCACCCATAGGCCATTCTCCCCTTGAT
CATCCGCTGCCCGGTACGCATAGATGCCAAAACGCTTGGTGGGATCGCCC
ACTTTGCGCAGATGGGGAACCTCGCGATCCTGTGGTTGCTGCTGCAGCAA
ATCACAAATCTCCGGCCAGCTAAGCAATCCTGGCGTAACAGTTTGCCTTC
CCGGCGGTGCAGCTCCATTTGCCGCCGGAATTGGTGGATAGCCGGTGATG
CCGGAGTTTCGGGTCATATTCCAAGCTCGACCATAACTGGTCACTCCCAC
GTGCAGTTTGTGGACACTGATTTCGGATGTCTGGTTCATCCAATACTGCA
CCTGGTACTGCACATTGTGACTGGGATCCCGATCGTACATGGCATACAAT
GGCGTGGGCAGATCTGCAACTTTGGGATCGCGTTCCGGCGTTTGGAAGTC
ATAGGTGCCCAGGTTGACGAAGTCCACGTTACTTAGAACCTTTGGAACAT
CAATAAAGAGTTCCGCTGAAACATGTGGCAACATACTGACGGTTAGCAGT
TGGCCACCGCGTCGCAAATCGGATTGCAGCTCTTCGAGAAGTGTGGCAAA
CTGCTCACGATGCTCCTCGGACTTCTCGTCAACCG
BO17014.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5154-PA | 1335 | Idgf5-RA | 571..1332 | 780..19 | 3810 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:01:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Idgf5-RA | 1495 | CG5154-RA | 608..1374 | 785..19 | 3820 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:00:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18394521..18395161 | 659..19 | 3205 | 100 | Minus |
2R | 25286936 | 2R | 18394329..18394454 | 785..660 | 615 | 99.2 | Minus |
X | 23542271 | X | 9928535..9928656 | 140..261 | 190 | 77 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:00:56 has no hits.
BO17014.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:01:23 Download gff for
BO17014.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5154-PA | 566..1335 | 15..785 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:22:07 Download gff for
BO17014.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Idgf5-RA | 608..1377 | 15..785 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:06:26 Download gff for
BO17014.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Idgf5-RA | 608..1377 | 15..785 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:06:26 Download gff for
BO17014.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18394329..18394454 | 660..785 | 99 | -> | Minus |
2R | 18394521..18395164 | 15..659 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:22:07 Download gff for
BO17014.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14281834..14281959 | 660..785 | 99 | -> | Minus |
arm_2R | 14282026..14282669 | 15..659 | 99 | | Minus |
BO17014.5prime Sequence
724 bp (723 high quality bases) assembled on 2006-10-13
> BO17014.5prime
GAAGTTATCAGTCGACATGATGTGGATTCAAAAGAACCCATTTTTAGGGT
TATTGCTCTGCAGTTTTTTGGCATTTTTCCAGAGTACATATGCAGAGGTT
GGAAAACTGGTGTGCTTCTACGATGCGCAGAGTTTTGTGCGTGAAGGCCC
CGCCCAAATGTCGCTGGCTGAACTGGAGCCCGCTCTACAGTTTTGCAACT
TTCTGGTCTACGGCTATGCGGGCATTGATGCCGTAACCTATAAGATCAAG
AGTTTGGATCCTTCGTTGACCAATGATCGTCAGCATTATCGACACATTAC
CGCTCTGCGCAAAAAATATCCGCATGTTCGCTTCCTGCTTTCGGTGGGCG
GCGATCGGGATGTGAACAGCGAGGGCGTGGCAGATAGTGACAAGTATCTA
AGATTACTGGAACAGTCGGAGCATCGGAAAAGCTTTCAGGCAAGCGTTTT
GGCGGAACTGAACAACAACGGCTTCGATGGCATCGATCTCGCCTGGCAGT
TTCCCAAAAATAGGCCCAAACTGCAGCAGGGCGTGTTTAAGAGGGTATGG
GGATCGTTACGTGGCTGGTTTAGTTCCTCATCGGTGGACGAGAAGTCCGA
GGAGCATCGTGAGCAGTTTGCCACACTTCTCGAAGAGCTGCAATCCGATT
TGCGACGCGGTGGCCAACTGCTAACCGTCAGTATGTTGCCACATGTTTCA
GCGGAACTCTTTATTGATGTTCCA
BO17014.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5154-PA | 1335 | Idgf5-RA | 1..708 | 17..724 | 3540 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:11:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Idgf5-RA | 1495 | CG5154-RA | 42..750 | 16..724 | 3545 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:11:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18393892..18394454 | 145..707 | 2815 | 100 | Plus |
2R | 25286936 | 2R | 18393707..18393838 | 16..147 | 660 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:11:24 has no hits.
BO17014.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:01:25 Download gff for
BO17014.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5154-PA | 1..707 | 17..723 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:02:58 Download gff for
BO17014.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Idgf5-RA | 35..749 | 6..723 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:20:47 Download gff for
BO17014.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Idgf5-RA | 35..749 | 6..723 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:20:47 Download gff for
BO17014.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18393700..18393837 | 6..146 | 97 | -> | Plus |
2R | 18393894..18394454 | 147..707 | 100 | -> | Plus |
2R | 18394521..18394536 | 708..723 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:02:58 Download gff for
BO17014.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14281205..14281342 | 6..146 | 97 | -> | Plus |
arm_2R | 14281399..14281959 | 147..707 | 100 | -> | Plus |
arm_2R | 14282026..14282041 | 708..723 | 100 | | Plus |
BO17014.complete Sequence
1366 bp assembled on 2006-10-11
GenBank Submission: FJ634012
> BO17014.complete
GAAGTTATCAGTCGACATGATGTGGATTCAAAAGAACCCATTTTTAGGGT
TATTGCTCTGCAGTTTTTTGGCATTTTTCCAGAGTACATATGCAGAGGTT
GGAAAACTGGTGTGCTTCTACGATGCGCAGAGTTTTGTGCGTGAAGGCCC
CGCCCAAATGTCGCTGGCTGAACTGGAGCCCGCTCTACAGTTTTGCAACT
TTCTGGTCTACGGCTATGCGGGCATTGATGCCGTAACCTATAAGATCAAG
AGTTTGGATCCTTCGTTGACCAATGATCGTCAGCATTATCGACACATTAC
CGCTCTGCGCAAAAAATATCCGCATGTTCGCTTCCTGCTTTCGGTGGGCG
GCGATCGGGATGTGAACAGCGAGGGCGTGGCAGATAGTGACAAGTATCTA
AGATTACTGGAACAGTCGGAGCATCGGAAAAGCTTTCAGGCAAGCGTTTT
GGCGGAACTGAACAACAACGGCTTCGATGGCATCGATCTCGCCTGGCAGT
TTCCCAAAAATAGGCCCAAACTGCAGCAGGGCGTGTTTAAGAGGGTATGG
GGATCGTTACGTGGCTGGTTTAGTTCCTCATCGGTGGACGAGAAGTCCGA
GGAGCATCGTGAGCAGTTTGCCACACTTCTCGAAGAGCTGCAATCCGATT
TGCGACGCGGTGGCCAACTGCTAACCGTCAGTATGTTGCCACATGTTTCA
GCGGAACTCTTTATTGATGTTCCAAAGGTTCTAAGTAACGTGGACTTCGT
CAACCTGGGCACCTATGACTTCCAAACGCCGGAACGCGATCCCAAAGTTG
CAGATCTGCCCACGCCATTGTATGCCATGTACGATCGGGATCCCAGTCAC
AATGTGCAGTACCAGGTGCAGTATTGGATGAACCAGACATCCGAAATCAG
TGTCCACAAACTGCACGTGGGAGTGACCAGTTATGGTCGAGCTTGGAATA
TGACCCGAAACTCCGGCATCACCGGCTATCCACCAATTCCGGCGGCAAAT
GGAGCTGCACCGCCGGGAAGGCAAACTGTTACGCCAGGATTGCTTAGCTG
GCCGGAGATTTGTGATTTGCTGCAGCAGCAACCACAGGATCGCGAGGTTC
CCCATCTGCGCAAAGTGGGCGATCCCACCAAGCGTTTTGGCATCTATGCG
TACCGGGCAGCGGATGATCAAGGGGAGAATGGCCTATGGGTGGGCTACGA
GGATCCCTTGACGGCGGCCATTAAGGCCGGATTTGTGCATGCCCAAGGAT
TGGGCGGAGTGGCCTTCCACGACCTGTCCATGGATGATTTTCGTGGTCAG
TGTGCTGGCGAAAAATTTCCCATTCTGCGAAGCATCAAGTTTAAGCTAGC
AAGCTTTCTAGACCAT
BO17014.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:02:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Idgf5-RA | 1335 | CG5154-PA | 1..1332 | 17..1348 | 6660 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:02:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Idgf5-RA | 1495 | CG5154-RA | 42..1374 | 16..1348 | 6665 | 100 | Plus |
Idgf4-RC | 1807 | CG1780-RC | 1124..1245 | 1106..1227 | 190 | 77 | Plus |
Idgf4-RB | 1541 | CG1780-RB | 1151..1272 | 1106..1227 | 190 | 77 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:02:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18394521..18395161 | 708..1348 | 3205 | 100 | Plus |
2R | 25286936 | 2R | 18393892..18394454 | 145..707 | 2815 | 100 | Plus |
2R | 25286936 | 2R | 18393707..18393838 | 16..147 | 660 | 100 | Plus |
X | 23542271 | X | 9928535..9928656 | 1227..1106 | 190 | 77 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:02:13 has no hits.
BO17014.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:25:42 Download gff for
BO17014.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Idgf5-RA | 1..1335 | 17..1352 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:45:57 Download gff for
BO17014.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Idgf5-RA | 39..1381 | 6..1352 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:01 Download gff for
BO17014.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Idgf5-RA | 43..1374 | 17..1350 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:25:42 Download gff for
BO17014.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Idgf5-RA | 39..1381 | 6..1352 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:08:53 Download gff for
BO17014.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Idgf5-RA | 43..1374 | 17..1350 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:08:53 Download gff for
BO17014.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18393708..18393837 | 17..146 | 100 | -> | Plus |
2R | 18393894..18394454 | 147..707 | 100 | -> | Plus |
2R | 18394521..18395161 | 708..1350 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:01 Download gff for
BO17014.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14281213..14281342 | 17..146 | 100 | -> | Plus |
arm_2R | 14281399..14281959 | 147..707 | 100 | -> | Plus |
arm_2R | 14282026..14282666 | 708..1350 | 99 | | Plus |
BO17014.pep Sequence
Translation from 16 to 1366
> BO17014.pep
MMWIQKNPFLGLLLCSFLAFFQSTYAEVGKLVCFYDAQSFVREGPAQMSL
AELEPALQFCNFLVYGYAGIDAVTYKIKSLDPSLTNDRQHYRHITALRKK
YPHVRFLLSVGGDRDVNSEGVADSDKYLRLLEQSEHRKSFQASVLAELNN
NGFDGIDLAWQFPKNRPKLQQGVFKRVWGSLRGWFSSSSVDEKSEEHREQ
FATLLEELQSDLRRGGQLLTVSMLPHVSAELFIDVPKVLSNVDFVNLGTY
DFQTPERDPKVADLPTPLYAMYDRDPSHNVQYQVQYWMNQTSEISVHKLH
VGVTSYGRAWNMTRNSGITGYPPIPAANGAAPPGRQTVTPGLLSWPEICD
LLQQQPQDREVPHLRKVGDPTKRFGIYAYRAADDQGENGLWVGYEDPLTA
AIKAGFVHAQGLGGVAFHDLSMDDFRGQCAGEKFPILRSIKFKLASFLDH
BO17014.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:56:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Idgf5-PA | 444 | CG5154-PA | 1..444 | 1..444 | 2361 | 100 | Plus |
Idgf4-PC | 442 | CG1780-PC | 9..442 | 13..444 | 1123 | 51.4 | Plus |
Idgf4-PB | 442 | CG1780-PB | 9..442 | 13..444 | 1123 | 51.4 | Plus |
Idgf4-PA | 442 | CG1780-PA | 9..442 | 13..444 | 1123 | 51.4 | Plus |
CG5210-PB | 452 | CG5210-PB | 31..452 | 31..446 | 1062 | 49.6 | Plus |