Clone BO17014 Report

Search the DGRC for BO17014

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:170
Well:14
Vector:pDNR-Dual
Associated Gene/TranscriptIdgf5-RA
Protein status:BO17014.pep: validated full length
Sequenced Size:1366

Clone Sequence Records

BO17014.3prime Sequence

785 bp (653 high quality bases) assembled on 2006-10-13

> BO17014.3prime
ATGGTCTAGAAAGCTTGCTAGCTTAAACTTGATGCTTCGCAGAATGGGAA
ATTTTTCGCCAGCACACTGACCACGAAAATCATCCATGGACAGGTCGTGG
AAGGCCACTCCGCCCAATCCTTGGGCATGCACAAATCCGGCCTTAATGGC
CGCCGTCAAGGGATCCTCGTAGCCCACCCATAGGCCATTCTCCCCTTGAT
CATCCGCTGCCCGGTACGCATAGATGCCAAAACGCTTGGTGGGATCGCCC
ACTTTGCGCAGATGGGGAACCTCGCGATCCTGTGGTTGCTGCTGCAGCAA
ATCACAAATCTCCGGCCAGCTAAGCAATCCTGGCGTAACAGTTTGCCTTC
CCGGCGGTGCAGCTCCATTTGCCGCCGGAATTGGTGGATAGCCGGTGATG
CCGGAGTTTCGGGTCATATTCCAAGCTCGACCATAACTGGTCACTCCCAC
GTGCAGTTTGTGGACACTGATTTCGGATGTCTGGTTCATCCAATACTGCA
CCTGGTACTGCACATTGTGACTGGGATCCCGATCGTACATGGCATACAAT
GGCGTGGGCAGATCTGCAACTTTGGGATCGCGTTCCGGCGTTTGGAAGTC
ATAGGTGCCCAGGTTGACGAAGTCCACGTTACTTAGAACCTTTGGAACAT
CAATAAAGAGTTCCGCTGAAACATGTGGCAACATACTGACGGTTAGCAGT
TGGCCACCGCGTCGCAAATCGGATTGCAGCTCTTCGAGAAGTGTGGCAAA
CTGCTCACGATGCTCCTCGGACTTCTCGTCAACCG

BO17014.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG5154-PA 1335 Idgf5-RA 571..1332 780..19 3810 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:01:01
Subject Length Description Subject Range Query Range Score Percent Strand
Idgf5-RA 1495 CG5154-RA 608..1374 785..19 3820 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:00:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18394521..18395161 659..19 3205 100 Minus
2R 25286936 2R 18394329..18394454 785..660 615 99.2 Minus
X 23542271 X 9928535..9928656 140..261 190 77 Plus
Blast to na_te.dros performed on 2015-02-10 17:00:56 has no hits.

BO17014.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:01:23 Download gff for BO17014.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5154-PA 566..1335 15..785 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:22:07 Download gff for BO17014.3prime
Subject Subject Range Query Range Percent Splice Strand
Idgf5-RA 608..1377 15..785 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:06:26 Download gff for BO17014.3prime
Subject Subject Range Query Range Percent Splice Strand
Idgf5-RA 608..1377 15..785 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:06:26 Download gff for BO17014.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 18394329..18394454 660..785 99 -> Minus
2R 18394521..18395164 15..659 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:22:07 Download gff for BO17014.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14281834..14281959 660..785 99 -> Minus
arm_2R 14282026..14282669 15..659 99   Minus

BO17014.5prime Sequence

724 bp (723 high quality bases) assembled on 2006-10-13

> BO17014.5prime
GAAGTTATCAGTCGACATGATGTGGATTCAAAAGAACCCATTTTTAGGGT
TATTGCTCTGCAGTTTTTTGGCATTTTTCCAGAGTACATATGCAGAGGTT
GGAAAACTGGTGTGCTTCTACGATGCGCAGAGTTTTGTGCGTGAAGGCCC
CGCCCAAATGTCGCTGGCTGAACTGGAGCCCGCTCTACAGTTTTGCAACT
TTCTGGTCTACGGCTATGCGGGCATTGATGCCGTAACCTATAAGATCAAG
AGTTTGGATCCTTCGTTGACCAATGATCGTCAGCATTATCGACACATTAC
CGCTCTGCGCAAAAAATATCCGCATGTTCGCTTCCTGCTTTCGGTGGGCG
GCGATCGGGATGTGAACAGCGAGGGCGTGGCAGATAGTGACAAGTATCTA
AGATTACTGGAACAGTCGGAGCATCGGAAAAGCTTTCAGGCAAGCGTTTT
GGCGGAACTGAACAACAACGGCTTCGATGGCATCGATCTCGCCTGGCAGT
TTCCCAAAAATAGGCCCAAACTGCAGCAGGGCGTGTTTAAGAGGGTATGG
GGATCGTTACGTGGCTGGTTTAGTTCCTCATCGGTGGACGAGAAGTCCGA
GGAGCATCGTGAGCAGTTTGCCACACTTCTCGAAGAGCTGCAATCCGATT
TGCGACGCGGTGGCCAACTGCTAACCGTCAGTATGTTGCCACATGTTTCA
GCGGAACTCTTTATTGATGTTCCA

BO17014.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG5154-PA 1335 Idgf5-RA 1..708 17..724 3540 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:11:25
Subject Length Description Subject Range Query Range Score Percent Strand
Idgf5-RA 1495 CG5154-RA 42..750 16..724 3545 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:11:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18393892..18394454 145..707 2815 100 Plus
2R 25286936 2R 18393707..18393838 16..147 660 100 Plus
Blast to na_te.dros performed on 2015-02-11 09:11:24 has no hits.

BO17014.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:01:25 Download gff for BO17014.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5154-PA 1..707 17..723 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:02:58 Download gff for BO17014.5prime
Subject Subject Range Query Range Percent Splice Strand
Idgf5-RA 35..749 6..723 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:20:47 Download gff for BO17014.5prime
Subject Subject Range Query Range Percent Splice Strand
Idgf5-RA 35..749 6..723 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:20:47 Download gff for BO17014.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 18393700..18393837 6..146 97 -> Plus
2R 18393894..18394454 147..707 100 -> Plus
2R 18394521..18394536 708..723 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:02:58 Download gff for BO17014.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14281205..14281342 6..146 97 -> Plus
arm_2R 14281399..14281959 147..707 100 -> Plus
arm_2R 14282026..14282041 708..723 100   Plus

BO17014.complete Sequence

1366 bp assembled on 2006-10-11

GenBank Submission: FJ634012

> BO17014.complete
GAAGTTATCAGTCGACATGATGTGGATTCAAAAGAACCCATTTTTAGGGT
TATTGCTCTGCAGTTTTTTGGCATTTTTCCAGAGTACATATGCAGAGGTT
GGAAAACTGGTGTGCTTCTACGATGCGCAGAGTTTTGTGCGTGAAGGCCC
CGCCCAAATGTCGCTGGCTGAACTGGAGCCCGCTCTACAGTTTTGCAACT
TTCTGGTCTACGGCTATGCGGGCATTGATGCCGTAACCTATAAGATCAAG
AGTTTGGATCCTTCGTTGACCAATGATCGTCAGCATTATCGACACATTAC
CGCTCTGCGCAAAAAATATCCGCATGTTCGCTTCCTGCTTTCGGTGGGCG
GCGATCGGGATGTGAACAGCGAGGGCGTGGCAGATAGTGACAAGTATCTA
AGATTACTGGAACAGTCGGAGCATCGGAAAAGCTTTCAGGCAAGCGTTTT
GGCGGAACTGAACAACAACGGCTTCGATGGCATCGATCTCGCCTGGCAGT
TTCCCAAAAATAGGCCCAAACTGCAGCAGGGCGTGTTTAAGAGGGTATGG
GGATCGTTACGTGGCTGGTTTAGTTCCTCATCGGTGGACGAGAAGTCCGA
GGAGCATCGTGAGCAGTTTGCCACACTTCTCGAAGAGCTGCAATCCGATT
TGCGACGCGGTGGCCAACTGCTAACCGTCAGTATGTTGCCACATGTTTCA
GCGGAACTCTTTATTGATGTTCCAAAGGTTCTAAGTAACGTGGACTTCGT
CAACCTGGGCACCTATGACTTCCAAACGCCGGAACGCGATCCCAAAGTTG
CAGATCTGCCCACGCCATTGTATGCCATGTACGATCGGGATCCCAGTCAC
AATGTGCAGTACCAGGTGCAGTATTGGATGAACCAGACATCCGAAATCAG
TGTCCACAAACTGCACGTGGGAGTGACCAGTTATGGTCGAGCTTGGAATA
TGACCCGAAACTCCGGCATCACCGGCTATCCACCAATTCCGGCGGCAAAT
GGAGCTGCACCGCCGGGAAGGCAAACTGTTACGCCAGGATTGCTTAGCTG
GCCGGAGATTTGTGATTTGCTGCAGCAGCAACCACAGGATCGCGAGGTTC
CCCATCTGCGCAAAGTGGGCGATCCCACCAAGCGTTTTGGCATCTATGCG
TACCGGGCAGCGGATGATCAAGGGGAGAATGGCCTATGGGTGGGCTACGA
GGATCCCTTGACGGCGGCCATTAAGGCCGGATTTGTGCATGCCCAAGGAT
TGGGCGGAGTGGCCTTCCACGACCTGTCCATGGATGATTTTCGTGGTCAG
TGTGCTGGCGAAAAATTTCCCATTCTGCGAAGCATCAAGTTTAAGCTAGC
AAGCTTTCTAGACCAT

BO17014.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:02:14
Subject Length Description Subject Range Query Range Score Percent Strand
Idgf5-RA 1335 CG5154-PA 1..1332 17..1348 6660 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:02:15
Subject Length Description Subject Range Query Range Score Percent Strand
Idgf5-RA 1495 CG5154-RA 42..1374 16..1348 6665 100 Plus
Idgf4-RC 1807 CG1780-RC 1124..1245 1106..1227 190 77 Plus
Idgf4-RB 1541 CG1780-RB 1151..1272 1106..1227 190 77 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:02:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18394521..18395161 708..1348 3205 100 Plus
2R 25286936 2R 18393892..18394454 145..707 2815 100 Plus
2R 25286936 2R 18393707..18393838 16..147 660 100 Plus
X 23542271 X 9928535..9928656 1227..1106 190 77 Minus
Blast to na_te.dros performed on 2014-11-27 16:02:13 has no hits.

BO17014.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:25:42 Download gff for BO17014.complete
Subject Subject Range Query Range Percent Splice Strand
Idgf5-RA 1..1335 17..1352 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:45:57 Download gff for BO17014.complete
Subject Subject Range Query Range Percent Splice Strand
Idgf5-RA 39..1381 6..1352 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:01 Download gff for BO17014.complete
Subject Subject Range Query Range Percent Splice Strand
Idgf5-RA 43..1374 17..1350 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:25:42 Download gff for BO17014.complete
Subject Subject Range Query Range Percent Splice Strand
Idgf5-RA 39..1381 6..1352 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:08:53 Download gff for BO17014.complete
Subject Subject Range Query Range Percent Splice Strand
Idgf5-RA 43..1374 17..1350 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:08:53 Download gff for BO17014.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18393708..18393837 17..146 100 -> Plus
2R 18393894..18394454 147..707 100 -> Plus
2R 18394521..18395161 708..1350 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:01 Download gff for BO17014.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14281213..14281342 17..146 100 -> Plus
arm_2R 14281399..14281959 147..707 100 -> Plus
arm_2R 14282026..14282666 708..1350 99   Plus

BO17014.pep Sequence

Translation from 16 to 1366

> BO17014.pep
MMWIQKNPFLGLLLCSFLAFFQSTYAEVGKLVCFYDAQSFVREGPAQMSL
AELEPALQFCNFLVYGYAGIDAVTYKIKSLDPSLTNDRQHYRHITALRKK
YPHVRFLLSVGGDRDVNSEGVADSDKYLRLLEQSEHRKSFQASVLAELNN
NGFDGIDLAWQFPKNRPKLQQGVFKRVWGSLRGWFSSSSVDEKSEEHREQ
FATLLEELQSDLRRGGQLLTVSMLPHVSAELFIDVPKVLSNVDFVNLGTY
DFQTPERDPKVADLPTPLYAMYDRDPSHNVQYQVQYWMNQTSEISVHKLH
VGVTSYGRAWNMTRNSGITGYPPIPAANGAAPPGRQTVTPGLLSWPEICD
LLQQQPQDREVPHLRKVGDPTKRFGIYAYRAADDQGENGLWVGYEDPLTA
AIKAGFVHAQGLGGVAFHDLSMDDFRGQCAGEKFPILRSIKFKLASFLDH

BO17014.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:56:56
Subject Length Description Subject Range Query Range Score Percent Strand
Idgf5-PA 444 CG5154-PA 1..444 1..444 2361 100 Plus
Idgf4-PC 442 CG1780-PC 9..442 13..444 1123 51.4 Plus
Idgf4-PB 442 CG1780-PB 9..442 13..444 1123 51.4 Plus
Idgf4-PA 442 CG1780-PA 9..442 13..444 1123 51.4 Plus
CG5210-PB 452 CG5210-PB 31..452 31..446 1062 49.6 Plus