Clone BO17017 Report

Search the DGRC for BO17017

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:170
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptI-2-RA
Protein status:BO17017.pep: Imported from assembly
Sequenced Size:649

Clone Sequence Records

BO17017.complete Sequence

649 bp assembled on 2008-11-10

GenBank Submission: KX799624

> BO17017.complete
GAAGTTATCAGTCGACATGCAGAACAATCCCAGCCCACAGCTACCCTGCA
AGGGTATACTAAAGACTTCGCGTAGCTTCGACAAGTCGGGAGCCAGTTTT
CGCAAAAGTGCCAAGTTCGATGAGCTGAACGTGATGCAGACCTTCCATCC
GGCCGACAAGGACTACGGACACATGAAAATCGATGAGCCCAAAACGCCGT
ACAACTACACGGAGGGCTTCGACGAGAACAGGGACGAGCTGGACACGGAG
TTGCTAGTGGAGAAACTCCGCATAGCGGCTAACACACAGCCGTCGACAGA
GAGCATCGAGGACGATGGTTCCTCCGGTGATGACCAGCCCCTTAGCGAAG
AGGAGCGACAACGGCGGCGCGAATTCGAGCGACGCCGTAAGGCCCACTAT
CGCGAGTTTGAGGCCGTCAAACTGGCACGAAAACTGATCCAGGAGGAGGA
CGACGACGATGACGACGAGGACAAGGGTGCGGATAGCCGGCCCTCGGGCT
CGTCACAGGGCGCTTCCAGCTCCGGACGTTTCGCGAGCAGTTCGACCAAA
CGGTCGAGCTCTCAGGCTGACTCCACCACATCCCCGTCTACCAGCGCCGG
CCAGAACATGGACCTGGAGCCATCGAATAACGCAAGCTTTCTAGACCAT

BO17017.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:17:28
Subject Length Description Subject Range Query Range Score Percent Strand
I-2-RB 933 CG10574-PB 316..930 17..631 3075 100 Plus
I-2-RA 618 CG10574-PA 1..615 17..631 3075 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:17:29
Subject Length Description Subject Range Query Range Score Percent Strand
I-2-RB 1574 CG10574-RB 316..930 17..631 3075 100 Plus
I-2-RA 1561 CG10574-RA 303..917 17..631 3075 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:17:26
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9835011..9835282 631..360 1360 100 Minus
3L 28110227 3L 9835813..9835982 264..95 850 100 Minus
3L 28110227 3L 9835339..9835433 359..265 475 100 Minus
3L 28110227 3L 9836049..9836128 96..17 400 100 Minus
Blast to na_te.dros performed 2014-11-26 22:17:27
Subject Length Description Subject Range Query Range Score Percent Strand
G-element 4346 G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). 565..601 438..473 119 83.8 Plus

BO17017.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:18:25 Download gff for BO17017.complete
Subject Subject Range Query Range Percent Splice Strand
I-2-RB 312..937 9..637 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:53:13 Download gff for BO17017.complete
Subject Subject Range Query Range Percent Splice Strand
I-2-RA 303..917 17..633 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-11 13:12:47 Download gff for BO17017.complete
Subject Subject Range Query Range Percent Splice Strand
I-2-RB 316..930 17..633 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:56:41 Download gff for BO17017.complete
Subject Subject Range Query Range Percent Splice Strand
I-2-RA 303..917 17..633 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:56:41 Download gff for BO17017.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9835009..9835282 360..633 99 <- Minus
3L 9835339..9835433 265..359 100 <- Minus
3L 9835813..9835980 97..264 100 <- Minus
3L 9836049..9836128 17..96 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:53:13 Download gff for BO17017.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9828913..9829080 97..264 100 <- Minus
arm_3L 9829149..9829228 17..96 100   Minus
arm_3L 9828109..9828382 360..633 99 <- Minus
arm_3L 9828439..9828533 265..359 100 <- Minus

BO17017.5prime Sequence

704 bp (662 high quality bases) assembled on 2006-10-13

> BO17017.5prime
TTTTTTTGTTTTCTTTTTGCCTCGTCTCGTGCCTGGGGAGGAGGGGGGGG
GGGGGGTGAGGGAGGAAGCAGCAAAAAAAATTCAAATAAAATAAATTATA
NGAAGTTATTAGTNNGAATGNAGAANAATCCNAGCCNANAGTTANCCTGN
AAGGGTATANTAAAGATTTCGNGTAGATTCGACAAGTCGGGAGCCAGTTT
TCGCAAAAGTGCCAAGTTCGATGAGCTGAACGTGATGCAGACCTTCCATC
CGGCCGACAAGGACTACGGACACATGAAAATCGATGAGCCCAAAACGCCG
TACAACTACACGGAGGGCTTCGACGAGAACAGGGACGAGCTGGACACGGA
GTTGCTAGTGGAGAAACTCCGCATAGCGGCTAACACACAGCCGTCGACAG
AGAGCATCGAGGACGATGGTTCCTCCGGTGATGACCAGCCCCTTAGCGAA
GAGGAGCGACAACGGCGGCGCGAATTCGAGCGACGCCGTAAGGCCCACTA
TCGCGAGTTTGAGGCCGTCAAACTGGCACGAAAACTGATCCAGGAGGAGG
ACGACGACGATGACGACGAGGACAAGGGTGCGGATAGCCGGCCCTCGGGC
TCGTCACAGGGCGCTTCCAGCTCCGGACGTTTCGCGAGCAGTTCGACCAA
ACGGTCGAGCTCTCANGCTGACTCCACCACATCCCCGTCTACCAGCGCCG
GCCA

BO17017.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:58:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG10574-PA 618 I-2-RA 1..587 118..704 2670 97.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:48:08
Subject Length Description Subject Range Query Range Score Percent Strand
I-2-RB 1574 CG10574-RB 316..902 118..704 2780 97.8 Plus
I-2-RA 1561 CG10574-RA 303..889 118..704 2780 97.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:47:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9835039..9835282 704..461 1209 99.6 Minus
3L 28110227 3L 9835813..9835982 365..196 850 100 Minus
3L 28110227 3L 9835339..9835433 460..366 475 100 Minus
3L 28110227 3L 9836049..9836128 197..118 256 85 Minus
Blast to na_te.dros performed 2015-02-10 17:48:03
Subject Length Description Subject Range Query Range Score Percent Strand
G-element 4346 G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). 565..601 539..574 119 83.8 Plus

BO17017.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:01:28 Download gff for BO17017.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10574-PA 16..586 133..703 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:45:16 Download gff for BO17017.5prime
Subject Subject Range Query Range Percent Splice Strand
I-2-RA 318..888 133..703 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:01:39 Download gff for BO17017.5prime
Subject Subject Range Query Range Percent Splice Strand
I-2-RA 318..888 133..703 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:01:39 Download gff for BO17017.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9835040..9835282 461..703 99 <- Minus
3L 9835339..9835433 366..460 100 <- Minus
3L 9835813..9835980 198..365 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:45:16 Download gff for BO17017.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9828140..9828382 461..703 99 <- Minus
arm_3L 9828439..9828533 366..460 100 <- Minus
arm_3L 9828913..9829080 198..365 100 <- Minus

BO17017.pep Sequence

Translation from 16 to 649

> BO17017.pep
MQNNPSPQLPCKGILKTSRSFDKSGASFRKSAKFDELNVMQTFHPADKDY
GHMKIDEPKTPYNYTEGFDENRDELDTELLVEKLRIAANTQPSTESIEDD
GSSGDDQPLSEEERQRRREFERRRKAHYREFEAVKLARKLIQEEDDDDDD
EDKGADSRPSGSSQGASSSGRFASSSTKRSSSQADSTTSPSTSAGQNMDL
EPSNNASFLDH

BO17017.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:04:57
Subject Length Description Subject Range Query Range Score Percent Strand
I-2-PA 205 CG10574-PA 1..205 1..205 1057 100 Plus
I-2-PB 310 CG10574-PB 106..310 1..205 1057 100 Plus
CG6380-PB 293 CG6380-PB 7..136 12..144 315 51.5 Plus
CG6380-PA 293 CG6380-PA 7..136 12..144 315 51.5 Plus