Clone Sequence Records
BO17017.complete Sequence
649 bp assembled on 2008-11-10
GenBank Submission: KX799624
> BO17017.complete
GAAGTTATCAGTCGACATGCAGAACAATCCCAGCCCACAGCTACCCTGCA
AGGGTATACTAAAGACTTCGCGTAGCTTCGACAAGTCGGGAGCCAGTTTT
CGCAAAAGTGCCAAGTTCGATGAGCTGAACGTGATGCAGACCTTCCATCC
GGCCGACAAGGACTACGGACACATGAAAATCGATGAGCCCAAAACGCCGT
ACAACTACACGGAGGGCTTCGACGAGAACAGGGACGAGCTGGACACGGAG
TTGCTAGTGGAGAAACTCCGCATAGCGGCTAACACACAGCCGTCGACAGA
GAGCATCGAGGACGATGGTTCCTCCGGTGATGACCAGCCCCTTAGCGAAG
AGGAGCGACAACGGCGGCGCGAATTCGAGCGACGCCGTAAGGCCCACTAT
CGCGAGTTTGAGGCCGTCAAACTGGCACGAAAACTGATCCAGGAGGAGGA
CGACGACGATGACGACGAGGACAAGGGTGCGGATAGCCGGCCCTCGGGCT
CGTCACAGGGCGCTTCCAGCTCCGGACGTTTCGCGAGCAGTTCGACCAAA
CGGTCGAGCTCTCAGGCTGACTCCACCACATCCCCGTCTACCAGCGCCGG
CCAGAACATGGACCTGGAGCCATCGAATAACGCAAGCTTTCTAGACCAT
BO17017.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:17:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
I-2-RB | 933 | CG10574-PB | 316..930 | 17..631 | 3075 | 100 | Plus |
I-2-RA | 618 | CG10574-PA | 1..615 | 17..631 | 3075 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:17:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
I-2-RB | 1574 | CG10574-RB | 316..930 | 17..631 | 3075 | 100 | Plus |
I-2-RA | 1561 | CG10574-RA | 303..917 | 17..631 | 3075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:17:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9835011..9835282 | 631..360 | 1360 | 100 | Minus |
3L | 28110227 | 3L | 9835813..9835982 | 264..95 | 850 | 100 | Minus |
3L | 28110227 | 3L | 9835339..9835433 | 359..265 | 475 | 100 | Minus |
3L | 28110227 | 3L | 9836049..9836128 | 96..17 | 400 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 22:17:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 565..601 | 438..473 | 119 | 83.8 | Plus |
BO17017.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:18:25 Download gff for
BO17017.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
I-2-RB | 312..937 | 9..637 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:53:13 Download gff for
BO17017.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
I-2-RA | 303..917 | 17..633 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-11 13:12:47 Download gff for
BO17017.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
I-2-RB | 316..930 | 17..633 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:56:41 Download gff for
BO17017.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
I-2-RA | 303..917 | 17..633 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:56:41 Download gff for
BO17017.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9835009..9835282 | 360..633 | 99 | <- | Minus |
3L | 9835339..9835433 | 265..359 | 100 | <- | Minus |
3L | 9835813..9835980 | 97..264 | 100 | <- | Minus |
3L | 9836049..9836128 | 17..96 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:53:13 Download gff for
BO17017.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9828913..9829080 | 97..264 | 100 | <- | Minus |
arm_3L | 9829149..9829228 | 17..96 | 100 | | Minus |
arm_3L | 9828109..9828382 | 360..633 | 99 | <- | Minus |
arm_3L | 9828439..9828533 | 265..359 | 100 | <- | Minus |
BO17017.5prime Sequence
704 bp (662 high quality bases) assembled on 2006-10-13
> BO17017.5prime
TTTTTTTGTTTTCTTTTTGCCTCGTCTCGTGCCTGGGGAGGAGGGGGGGG
GGGGGGTGAGGGAGGAAGCAGCAAAAAAAATTCAAATAAAATAAATTATA
NGAAGTTATTAGTNNGAATGNAGAANAATCCNAGCCNANAGTTANCCTGN
AAGGGTATANTAAAGATTTCGNGTAGATTCGACAAGTCGGGAGCCAGTTT
TCGCAAAAGTGCCAAGTTCGATGAGCTGAACGTGATGCAGACCTTCCATC
CGGCCGACAAGGACTACGGACACATGAAAATCGATGAGCCCAAAACGCCG
TACAACTACACGGAGGGCTTCGACGAGAACAGGGACGAGCTGGACACGGA
GTTGCTAGTGGAGAAACTCCGCATAGCGGCTAACACACAGCCGTCGACAG
AGAGCATCGAGGACGATGGTTCCTCCGGTGATGACCAGCCCCTTAGCGAA
GAGGAGCGACAACGGCGGCGCGAATTCGAGCGACGCCGTAAGGCCCACTA
TCGCGAGTTTGAGGCCGTCAAACTGGCACGAAAACTGATCCAGGAGGAGG
ACGACGACGATGACGACGAGGACAAGGGTGCGGATAGCCGGCCCTCGGGC
TCGTCACAGGGCGCTTCCAGCTCCGGACGTTTCGCGAGCAGTTCGACCAA
ACGGTCGAGCTCTCANGCTGACTCCACCACATCCCCGTCTACCAGCGCCG
GCCA
BO17017.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:58:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10574-PA | 618 | I-2-RA | 1..587 | 118..704 | 2670 | 97.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:48:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
I-2-RB | 1574 | CG10574-RB | 316..902 | 118..704 | 2780 | 97.8 | Plus |
I-2-RA | 1561 | CG10574-RA | 303..889 | 118..704 | 2780 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:47:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9835039..9835282 | 704..461 | 1209 | 99.6 | Minus |
3L | 28110227 | 3L | 9835813..9835982 | 365..196 | 850 | 100 | Minus |
3L | 28110227 | 3L | 9835339..9835433 | 460..366 | 475 | 100 | Minus |
3L | 28110227 | 3L | 9836049..9836128 | 197..118 | 256 | 85 | Minus |
Blast to na_te.dros performed 2015-02-10 17:48:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 565..601 | 539..574 | 119 | 83.8 | Plus |
BO17017.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:01:28 Download gff for
BO17017.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10574-PA | 16..586 | 133..703 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:45:16 Download gff for
BO17017.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
I-2-RA | 318..888 | 133..703 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:01:39 Download gff for
BO17017.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
I-2-RA | 318..888 | 133..703 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:01:39 Download gff for
BO17017.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9835040..9835282 | 461..703 | 99 | <- | Minus |
3L | 9835339..9835433 | 366..460 | 100 | <- | Minus |
3L | 9835813..9835980 | 198..365 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:45:16 Download gff for
BO17017.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9828140..9828382 | 461..703 | 99 | <- | Minus |
arm_3L | 9828439..9828533 | 366..460 | 100 | <- | Minus |
arm_3L | 9828913..9829080 | 198..365 | 100 | <- | Minus |
BO17017.pep Sequence
Translation from 16 to 649
> BO17017.pep
MQNNPSPQLPCKGILKTSRSFDKSGASFRKSAKFDELNVMQTFHPADKDY
GHMKIDEPKTPYNYTEGFDENRDELDTELLVEKLRIAANTQPSTESIEDD
GSSGDDQPLSEEERQRRREFERRRKAHYREFEAVKLARKLIQEEDDDDDD
EDKGADSRPSGSSQGASSSGRFASSSTKRSSSQADSTTSPSTSAGQNMDL
EPSNNASFLDH
BO17017.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:04:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
I-2-PA | 205 | CG10574-PA | 1..205 | 1..205 | 1057 | 100 | Plus |
I-2-PB | 310 | CG10574-PB | 106..310 | 1..205 | 1057 | 100 | Plus |
CG6380-PB | 293 | CG6380-PB | 7..136 | 12..144 | 315 | 51.5 | Plus |
CG6380-PA | 293 | CG6380-PA | 7..136 | 12..144 | 315 | 51.5 | Plus |