Clone BO17018 Report

Search the DGRC for BO17018

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:170
Well:18
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO17018.pep:
Sequenced Size:256

Clone Sequence Records

BO17018.5prime Sequence

254 bp (254 high quality bases) assembled on 2006-10-13

> BO17018.5prime
GAAGTTATCAGTCGACATGAAGCGCGGTACCATTATGGTGTGCTTGGAAC
CGCCATCGTTTACTTCAAAGGACTTGGACACCCGTTTCTCCTCCTCGGGA
TCTTCCACATCACGCTGCACCAAATCGAAATCAAATTCATCAAAGCGAAT
TCTTCGCAGCTCCGGTTACACAGAGCTGAACAGCAACTCGACTACTCTGC
TGTCCAGCGAGGACGAACTTACTCCGCGTCAGCGCCTCGCAAGCTTTCTA
GACC

BO17018.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG14033-PA 225 CG14033-RA 1..222 17..238 1110 100 Plus
CG9203-PA 2175 CG9203-RA 1894..1973 95..174 200 90 Plus
CG9203-PA 2175 CG9203-RA 2012..2062 186..236 180 94.1 Plus
CG9203-PA 2175 CG9203-RA 1814..1846 30..62 140 96.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:15:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG9203-RA 2349 CG9203-RA 1974..2057 91..174 285 89.3 Plus
CG9203-RA 2349 CG9203-RA 2096..2146 186..236 210 94.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:15:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5243776..5243997 17..238 1110 100 Plus
X 23542271 X 15473096..15473179 174..91 285 89.3 Minus
X 23542271 X 15473007..15473057 236..186 210 94.1 Minus
Blast to na_te.dros performed on 2015-01-31 10:15:30 has no hits.

BO17018.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:01:29 Download gff for BO17018.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14033-PA 1..225 17..239 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed on 2013-08-06 23:35:48 has no hits.
Sim4 to dmel-all-transcript-r6.02.fasta performed on 2015-01-31 12:44:57 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:44:57 Download gff for BO17018.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 5243771..5243997 10..238 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:35:48 Download gff for BO17018.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5243771..5243997 10..238 98   Plus

BO17018.3prime Sequence

254 bp (254 high quality bases) assembled on 2006-10-13

> BO17018.3prime
ATGGTCTAGAAAGCTTGCGAGGCGCTGACGCGGAGTAAGTTCGTCCTCGC
TGGACAGCAGAGTAGTCGAGTTGCTGTTCAGCTCTGTGTAACCGGAGCTG
CGAAGAATTCGCTTTGATGAATTTGATTTCGATTTGGTGCAGCGTGATGT
GGAAGATCCCGAGGAGGAGAAACGGGTGTCCAAGTCCTTTGAAGTAAACG
ATGGCGGTTCCAAGCACACCATAATGGTACCGCGCTTCATGTCGACTGAT
AACT

BO17018.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG14033-PA 225 CG14033-RA 1..222 240..19 1110 100 Minus
CG9203-PA 2175 CG9203-RA 1894..1973 162..83 200 90 Minus
CG9203-PA 2175 CG9203-RA 2012..2062 71..21 180 94.1 Minus
CG9203-PA 2175 CG9203-RA 1814..1846 227..195 140 96.9 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:56:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG9203-RA 2349 CG9203-RA 1974..2057 166..83 285 89.3 Minus
CG9203-RA 2349 CG9203-RA 2096..2146 71..21 210 94.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:56:38
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5243776..5243997 240..19 1110 100 Minus
X 23542271 X 15473096..15473179 83..166 285 89.3 Plus
X 23542271 X 15473007..15473057 21..71 210 94.1 Plus
Blast to na_te.dros performed on 2015-01-30 17:56:41 has no hits.

BO17018.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:01:28 Download gff for BO17018.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14033-PA 1..225 18..240 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed on 2013-08-06 18:52:12 has no hits.
Sim4 to dmel-all-transcript-r6.02.fasta performed on 2015-01-30 20:06:43 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:06:43 Download gff for BO17018.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 5243771..5243997 19..247 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:52:12 Download gff for BO17018.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5243771..5243997 19..247 98   Minus

BO17018.complete Sequence

256 bp assembled on 2006-10-11

GenBank Submission: FJ634013

> BO17018.complete
GAAGTTATCAGTCGACATGAAGCGCGGTACCATTATGGTGTGCTTGGAAC
CGCCATCGTTTACTTCAAAGGACTTGGACACCCGTTTCTCCTCCTCGGGA
TCTTCCACATCACGCTGCACCAAATCGAAATCAAATTCATCAAAGCGAAT
TCTTCGCAGCTCCGGTTACACAGAGCTGAACAGCAACTCGACTACTCTGC
TGTCCAGCGAGGACGAACTTACTCCGCGTCAGCGCCTCGCAAGCTTTCTA
GACCAT

BO17018.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:06:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG9203-RA 2175 CG9203-PA 1890..1973 91..174 285 89.3 Plus
CG9203-RA 2175 CG9203-PA 2012..2062 186..236 210 94.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:06:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG9203-RA 2349 CG9203-RA 1974..2057 91..174 285 89.3 Plus
CG9203-RA 2349 CG9203-RA 2096..2146 186..236 210 94.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:06:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5243776..5243997 17..238 1110 100 Plus
X 23542271 X 15473096..15473179 174..91 285 89.3 Minus
X 23542271 X 15473007..15473057 236..186 210 94.1 Minus
Blast to na_te.dros performed on 2014-11-26 22:06:49 has no hits.

BO17018.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:25:47 Download gff for BO17018.complete
Subject Subject Range Query Range Percent Splice Strand
CG14033-RA 1..225 17..239 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:45:59 Download gff for BO17018.complete
Subject Subject Range Query Range Percent Splice Strand
CG14033-RA 1065..1291 10..238 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed on 2013-08-04 03:47:11 has no hits.
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:25:47 Download gff for BO17018.complete
Subject Subject Range Query Range Percent Splice Strand
CG14033-RA 1065..1291 10..238 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed on 2014-11-26 22:51:36 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:51:36 Download gff for BO17018.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5243776..5243997 17..240 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:47:11 Download gff for BO17018.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5243776..5243997 17..240 99   Plus

BO17018.pep Sequence

Translation from 16 to 256

> BO17018.pep
MKRGTIMVCLEPPSFTSKDLDTRFSSSGSSTSRCTKSKSNSSKRILRSSG
YTELNSNSTTLLSSEDELTPRQRLASFLDH

BO17018.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:56:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG9203-PA 724 CG9203-PA 606..687 6..73 180 58.5 Plus