Clone Sequence Records
BO17018.5prime Sequence
254 bp (254 high quality bases) assembled on 2006-10-13
> BO17018.5prime
GAAGTTATCAGTCGACATGAAGCGCGGTACCATTATGGTGTGCTTGGAAC
CGCCATCGTTTACTTCAAAGGACTTGGACACCCGTTTCTCCTCCTCGGGA
TCTTCCACATCACGCTGCACCAAATCGAAATCAAATTCATCAAAGCGAAT
TCTTCGCAGCTCCGGTTACACAGAGCTGAACAGCAACTCGACTACTCTGC
TGTCCAGCGAGGACGAACTTACTCCGCGTCAGCGCCTCGCAAGCTTTCTA
GACC
BO17018.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14033-PA | 225 | CG14033-RA | 1..222 | 17..238 | 1110 | 100 | Plus |
CG9203-PA | 2175 | CG9203-RA | 1894..1973 | 95..174 | 200 | 90 | Plus |
CG9203-PA | 2175 | CG9203-RA | 2012..2062 | 186..236 | 180 | 94.1 | Plus |
CG9203-PA | 2175 | CG9203-RA | 1814..1846 | 30..62 | 140 | 96.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:15:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9203-RA | 2349 | CG9203-RA | 1974..2057 | 91..174 | 285 | 89.3 | Plus |
CG9203-RA | 2349 | CG9203-RA | 2096..2146 | 186..236 | 210 | 94.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:15:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5243776..5243997 | 17..238 | 1110 | 100 | Plus |
X | 23542271 | X | 15473096..15473179 | 174..91 | 285 | 89.3 | Minus |
X | 23542271 | X | 15473007..15473057 | 236..186 | 210 | 94.1 | Minus |
Blast to na_te.dros performed on 2015-01-31 10:15:30 has no hits.
BO17018.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:01:29 Download gff for
BO17018.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14033-PA | 1..225 | 17..239 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed on 2013-08-06 23:35:48 has no hits.
Sim4 to dmel-all-transcript-r6.02.fasta performed on 2015-01-31 12:44:57 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:44:57 Download gff for
BO17018.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5243771..5243997 | 10..238 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:35:48 Download gff for
BO17018.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5243771..5243997 | 10..238 | 98 | | Plus |
BO17018.3prime Sequence
254 bp (254 high quality bases) assembled on 2006-10-13
> BO17018.3prime
ATGGTCTAGAAAGCTTGCGAGGCGCTGACGCGGAGTAAGTTCGTCCTCGC
TGGACAGCAGAGTAGTCGAGTTGCTGTTCAGCTCTGTGTAACCGGAGCTG
CGAAGAATTCGCTTTGATGAATTTGATTTCGATTTGGTGCAGCGTGATGT
GGAAGATCCCGAGGAGGAGAAACGGGTGTCCAAGTCCTTTGAAGTAAACG
ATGGCGGTTCCAAGCACACCATAATGGTACCGCGCTTCATGTCGACTGAT
AACT
BO17018.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14033-PA | 225 | CG14033-RA | 1..222 | 240..19 | 1110 | 100 | Minus |
CG9203-PA | 2175 | CG9203-RA | 1894..1973 | 162..83 | 200 | 90 | Minus |
CG9203-PA | 2175 | CG9203-RA | 2012..2062 | 71..21 | 180 | 94.1 | Minus |
CG9203-PA | 2175 | CG9203-RA | 1814..1846 | 227..195 | 140 | 96.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:56:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9203-RA | 2349 | CG9203-RA | 1974..2057 | 166..83 | 285 | 89.3 | Minus |
CG9203-RA | 2349 | CG9203-RA | 2096..2146 | 71..21 | 210 | 94.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:56:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5243776..5243997 | 240..19 | 1110 | 100 | Minus |
X | 23542271 | X | 15473096..15473179 | 83..166 | 285 | 89.3 | Plus |
X | 23542271 | X | 15473007..15473057 | 21..71 | 210 | 94.1 | Plus |
Blast to na_te.dros performed on 2015-01-30 17:56:41 has no hits.
BO17018.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:01:28 Download gff for
BO17018.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14033-PA | 1..225 | 18..240 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed on 2013-08-06 18:52:12 has no hits.
Sim4 to dmel-all-transcript-r6.02.fasta performed on 2015-01-30 20:06:43 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:06:43 Download gff for
BO17018.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5243771..5243997 | 19..247 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:52:12 Download gff for
BO17018.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5243771..5243997 | 19..247 | 98 | | Minus |
BO17018.complete Sequence
256 bp assembled on 2006-10-11
GenBank Submission: FJ634013
> BO17018.complete
GAAGTTATCAGTCGACATGAAGCGCGGTACCATTATGGTGTGCTTGGAAC
CGCCATCGTTTACTTCAAAGGACTTGGACACCCGTTTCTCCTCCTCGGGA
TCTTCCACATCACGCTGCACCAAATCGAAATCAAATTCATCAAAGCGAAT
TCTTCGCAGCTCCGGTTACACAGAGCTGAACAGCAACTCGACTACTCTGC
TGTCCAGCGAGGACGAACTTACTCCGCGTCAGCGCCTCGCAAGCTTTCTA
GACCAT
BO17018.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:06:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9203-RA | 2175 | CG9203-PA | 1890..1973 | 91..174 | 285 | 89.3 | Plus |
CG9203-RA | 2175 | CG9203-PA | 2012..2062 | 186..236 | 210 | 94.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:06:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9203-RA | 2349 | CG9203-RA | 1974..2057 | 91..174 | 285 | 89.3 | Plus |
CG9203-RA | 2349 | CG9203-RA | 2096..2146 | 186..236 | 210 | 94.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:06:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5243776..5243997 | 17..238 | 1110 | 100 | Plus |
X | 23542271 | X | 15473096..15473179 | 174..91 | 285 | 89.3 | Minus |
X | 23542271 | X | 15473007..15473057 | 236..186 | 210 | 94.1 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:06:49 has no hits.
BO17018.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:25:47 Download gff for
BO17018.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14033-RA | 1..225 | 17..239 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:45:59 Download gff for
BO17018.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14033-RA | 1065..1291 | 10..238 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed on 2013-08-04 03:47:11 has no hits.
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:25:47 Download gff for
BO17018.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14033-RA | 1065..1291 | 10..238 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed on 2014-11-26 22:51:36 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:51:36 Download gff for
BO17018.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5243776..5243997 | 17..240 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:47:11 Download gff for
BO17018.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5243776..5243997 | 17..240 | 99 | | Plus |
BO17018.pep Sequence
Translation from 16 to 256
> BO17018.pep
MKRGTIMVCLEPPSFTSKDLDTRFSSSGSSTSRCTKSKSNSSKRILRSSG
YTELNSNSTTLLSSEDELTPRQRLASFLDH
BO17018.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:56:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9203-PA | 724 | CG9203-PA | 606..687 | 6..73 | 180 | 58.5 | Plus |