Clone Sequence Records
BO17019.3prime Sequence
781 bp (739 high quality bases) assembled on 2006-10-13
> BO17019.3prime
ATGGTCTAGAAAGCTTGCAGCGGATGCCAAGTGGATTTCCCGGATGAGTC
GGGAGACCAGTTCGCAGCAGGCCTTTTGCCTGTTCTTGGCCACAGCCATA
ACCTCATCGTGGTTGGCCTCATCGTCCTTCTTATCGCTGTACTCGGTGGC
GCACTTATTTGTGATGAGGCTGAAGGCGAATACCTTCATGTCGCAGTGCC
GTGCAGTGATGACCTCATGTACGGTGGACATGCCCACCGCATCCACGCCC
ATCATGCGCAGGGCCTTCAGCTCGGCGATGGTCTCGTAGTTGGGACCACC
CAGACAGGAGTATACGCCGACGTGAATGTTGGACTCTATGCCCATGGCCT
TGGCGATCTCGATGGCCTTGTTGATTAGGTCCTTGTTGTACGAGTTCACC
AGGGCGGGAAAGCGGGGTCCGAAGCGTGGGTCATTGGGTCCCTGGAGCGG
AGAATTTCCGGCAAAGCCCAGCATGTTGACATGGTCATGCATCAGCATGA
TGTCGCCCACCGCGAACCGTGGATTGATTCCACCAGCCGCATTGGTGGCG
AACAGGTATTCCACACCGCACAGCTTCATCACGCGAACCGGCATTGAGCA
CTTGGCCAGCGGATAGCCCTCGTAGAAGTGGAACCTGCCCTGCATCGCCA
TCACAGTGGCGCCCTCGAGTGTGCCGACCACCAGTCGTCCGGCATGGCCC
TCAACTGTAGATACCGGGAAGTTGGGGATCTTCTCATACTCGAAGATCTT
CGGGTCCTGGATCATATCGGCCAATGAGCCT
BO17019.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16758-PB | 1062 | CG16758-RB | 297..1059 | 781..19 | 3815 | 100 | Minus |
CG16758-PD | 990 | CG16758-RD | 225..987 | 781..19 | 3815 | 100 | Minus |
CG16758-PE | 966 | CG16758-RE | 201..963 | 781..19 | 3815 | 100 | Minus |
CG16758-PF | 987 | CG16758-RF | 222..984 | 781..19 | 3815 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:06:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16758-RG | 1617 | CG16758-RG | 687..1449 | 781..19 | 3815 | 100 | Minus |
CG16758-RH | 1689 | CG16758-RH | 759..1521 | 781..19 | 3815 | 100 | Minus |
CG16758-RF | 1245 | CG16758-RF | 315..1077 | 781..19 | 3815 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:06:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2499689..2500369 | 101..781 | 3405 | 100 | Plus |
3L | 28110227 | 3L | 2499540..2499625 | 19..104 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:06:12 has no hits.
BO17019.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:01:30 Download gff for
BO17019.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16758-PF | 222..987 | 15..781 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:28:32 Download gff for
BO17019.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16758-RF | 315..1081 | 14..781 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:20:12 Download gff for
BO17019.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16758-RF | 315..1081 | 14..781 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:20:12 Download gff for
BO17019.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2499536..2499623 | 14..102 | 97 | <- | Plus |
3L | 2499691..2500369 | 103..781 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:28:32 Download gff for
BO17019.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2499536..2499623 | 14..102 | 97 | <- | Plus |
arm_3L | 2499691..2500369 | 103..781 | 100 | | Plus |
BO17019.5prime Sequence
797 bp (633 high quality bases) assembled on 2006-10-13
> BO17019.5prime
GAAGTTATCAGTCGACATGACGGGTTACAAGGTGGCCAATGGCAATGGAC
ACAGCAATGGAAATGGAAACACGAAGGGAACAAATGGAACCAATGGACAC
AGCAATGGACACAAGTCGGCGGACTACACCGCCCAGGAGAATCCCACCGG
AAATGGAAAAATCCAATGCGAGCTTACGCACGAAGAGCTAAGAGCCCTTC
GGGTTCTCAACGAAGACACGTATCCCTATGAGGTCATCGAGGAGATCGCC
GACTTCATTACCAAGGGGTCCGGCATGCGCCCCAAGATCGGCATCATCTG
CGGCTCTGGGCTAGGCTCATTGGCCGATATGATCCAGGACCCGAAGATCT
TCGAGTATGAGAAGATCCCCAACTTCCCGGTATCTACAGTTGAGGGCCAT
GCCGGACGACTGGTGGTCGGCACACTCGAGGGCGCCACTGTGATGGCGAT
GCAGGGCAGGTTCCACTTCTACGAGGGCTATCCGCTGGCCAAGTGCTCAA
TGCCGGTTCGCGTGATGAAGCTGTGCGGTGTGGAATACCTGTTCGCCACC
AATGCGGCTGGTGGAATCAATCCACGGTTCGCGGTGGGCGACATCATGCT
GATGCATGACCATGTCAACATGCTGGGCTTTGCCGGAAATTCTCCGCTCC
AGGGACCCAATGACCCACGCTTCGGACCCCGCTTTCCCGCCCTGGTGAAC
TCGTACAACAAGGACCTAATCAACAAGGCCATCGAGATCGCCAAGGCCAT
GGGCATAGAGTCCAACATTCACGTCGGCGTATACTCCTGTCTGGNTG
BO17019.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16758-PB | 1062 | CG16758-RB | 1..778 | 17..794 | 3890 | 100 | Plus |
CG16758-PD | 990 | CG16758-RD | 129..706 | 217..794 | 2890 | 100 | Plus |
CG16758-PE | 966 | CG16758-RE | 108..682 | 220..794 | 2875 | 100 | Plus |
CG16758-PF | 987 | CG16758-RF | 129..703 | 220..794 | 2875 | 100 | Plus |
CG16758-PD | 990 | CG16758-RD | 1..131 | 17..147 | 655 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:50:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16758-RB | 1560 | CG16758-RB | 334..1111 | 17..794 | 3890 | 100 | Plus |
CG16758-RH | 1689 | CG16758-RH | 594..1240 | 148..794 | 3235 | 100 | Plus |
CG16758-RD | 1488 | CG16758-RD | 462..1039 | 217..794 | 2890 | 100 | Plus |
CG16758-RH | 1689 | CG16758-RH | 334..464 | 17..147 | 655 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:50:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2499888..2500467 | 794..215 | 2885 | 99.8 | Minus |
3L | 28110227 | 3L | 2503143..2503273 | 147..17 | 655 | 100 | Minus |
3L | 28110227 | 3L | 2501068..2501141 | 221..148 | 370 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:50:06 has no hits.
BO17019.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:01:31 Download gff for
BO17019.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16758-PB | 1..781 | 17..797 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:43:20 Download gff for
BO17019.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16758-RB | 323..1114 | 8..797 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:57:11 Download gff for
BO17019.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16758-RB | 323..1114 | 8..797 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:57:11 Download gff for
BO17019.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2499885..2500462 | 220..797 | 99 | <- | Minus |
3L | 2501070..2501141 | 148..219 | 100 | <- | Minus |
3L | 2503143..2503284 | 8..147 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:43:20 Download gff for
BO17019.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2499885..2500462 | 220..797 | 99 | <- | Minus |
arm_3L | 2501070..2501141 | 148..219 | 100 | <- | Minus |
arm_3L | 2503143..2503284 | 8..147 | 97 | | Minus |
BO17019.complete Sequence
1093 bp assembled on 2006-10-11
GenBank Submission: FJ634014
> BO17019.complete
GAAGTTATCAGTCGACATGACGGGTTACAAGGTGGCCAATGGCAATGGAC
ACAGCAATGGAAATGGAAACACGAAGGGAACAAATGGAACCAATGGACAC
AGCAATGGACACAAGTCGGCGGACTACACCGCCCAGGAGAATCCCACCGG
AAATGGAAAAATCCAATGCGAGCTTACGCACGAAGAGCTAAGAGCCCTTC
GGGTTCTCAACGAAGACACGTATCCCTATGAGGTCATCGAGGAGATCGCC
GACTTCATTACCAAGGGGTCCGGCATGCGCCCCAAGATCGGCATCATCTG
CGGCTCTGGGCTAGGCTCATTGGCCGATATGATCCAGGACCCGAAGATCT
TCGAGTATGAGAAGATCCCCAACTTCCCGGTATCTACAGTTGAGGGCCAT
GCCGGACGACTGGTGGTCGGCACACTCGAGGGCGCCACTGTGATGGCGAT
GCAGGGCAGGTTCCACTTCTACGAGGGCTATCCGCTGGCCAAGTGCTCAA
TGCCGGTTCGCGTGATGAAGCTGTGCGGTGTGGAATACCTGTTCGCCACC
AATGCGGCTGGTGGAATCAATCCACGGTTCGCGGTGGGCGACATCATGCT
GATGCATGACCATGTCAACATGCTGGGCTTTGCCGGAAATTCTCCGCTCC
AGGGACCCAATGACCCACGCTTCGGACCCCGCTTTCCCGCCCTGGTGAAC
TCGTACAACAAGGACCTAATCAACAAGGCCATCGAGATCGCCAAGGCCAT
GGGCATAGAGTCCAACATTCACGTCGGCGTATACTCCTGTCTGGGTGGTC
CCAACTACGAGACCATCGCCGAGCTGAAGGCCCTGCGCATGATGGGCGTG
GATGCGGTGGGCATGTCCACCGTACATGAGGTCATCACTGCACGGCACTG
CGACATGAAGGTATTCGCCTTCAGCCTCATCACAAATAAGTGCGCCACCG
AGTACAGCGATAAGAAGGACGATGAGGCCAACCACGATGAGGTTATGGCT
GTGGCCAAGAACAGGCAAAAGGCCTGCTGCGAACTGGTCTCCCGACTCAT
CCGGGAAATCCACTTGGCATCCGCTGCAAGCTTTCTAGACCAT
BO17019.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:01:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16758-RB | 1062 | CG16758-PB | 1..1059 | 17..1075 | 5295 | 100 | Plus |
CG16758-RH | 1191 | CG16758-PH | 261..1188 | 148..1075 | 4640 | 100 | Plus |
CG16758-RD | 990 | CG16758-PD | 129..987 | 217..1075 | 4295 | 100 | Plus |
CG16758-RH | 1191 | CG16758-PH | 1..131 | 17..147 | 655 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:01:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16758-RB | 1560 | CG16758-RB | 334..1392 | 17..1075 | 5295 | 100 | Plus |
CG16758-RH | 1689 | CG16758-RH | 594..1521 | 148..1075 | 4640 | 100 | Plus |
CG16758-RD | 1488 | CG16758-RD | 462..1320 | 217..1075 | 4295 | 100 | Plus |
CG16758-RH | 1689 | CG16758-RH | 334..464 | 17..147 | 655 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:01:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2499689..2500467 | 993..215 | 3880 | 99.9 | Minus |
3L | 28110227 | 3L | 2503143..2503273 | 147..17 | 655 | 100 | Minus |
3L | 28110227 | 3L | 2499540..2499625 | 1075..990 | 430 | 100 | Minus |
3L | 28110227 | 3L | 2501068..2501141 | 221..148 | 370 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:01:53 has no hits.
BO17019.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:25:12 Download gff for
BO17019.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16758-RB | 1..1062 | 17..1079 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:45:35 Download gff for
BO17019.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16758-RB | 301..1374 | 8..1080 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:44:02 Download gff for
BO17019.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16758-RB | 334..1392 | 17..1077 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:25:12 Download gff for
BO17019.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16758-RB | 301..1374 | 8..1080 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:13:07 Download gff for
BO17019.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16758-RB | 334..1392 | 17..1077 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:13:07 Download gff for
BO17019.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2501070..2501141 | 148..219 | 100 | <- | Minus |
3L | 2503143..2503273 | 17..147 | 100 | | Minus |
3L | 2499691..2500462 | 220..991 | 100 | <- | Minus |
3L | 2499538..2499623 | 992..1077 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:44:02 Download gff for
BO17019.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2499538..2499623 | 992..1077 | 97 | <- | Minus |
arm_3L | 2499691..2500462 | 220..991 | 100 | <- | Minus |
arm_3L | 2501070..2501141 | 148..219 | 100 | <- | Minus |
arm_3L | 2503143..2503273 | 17..147 | 100 | | Minus |
BO17019.pep Sequence
Translation from 16 to 1093
> BO17019.pep
MTGYKVANGNGHSNGNGNTKGTNGTNGHSNGHKSADYTAQENPTGNGKIQ
CELTHEELRALRVLNEDTYPYEVIEEIADFITKGSGMRPKIGIICGSGLG
SLADMIQDPKIFEYEKIPNFPVSTVEGHAGRLVVGTLEGATVMAMQGRFH
FYEGYPLAKCSMPVRVMKLCGVEYLFATNAAGGINPRFAVGDIMLMHDHV
NMLGFAGNSPLQGPNDPRFGPRFPALVNSYNKDLINKAIEIAKAMGIESN
IHVGVYSCLGGPNYETIAELKALRMMGVDAVGMSTVHEVITARHCDMKVF
AFSLITNKCATEYSDKKDDEANHDEVMAVAKNRQKACCELVSRLIREIHL
ASAASFLDH
BO17019.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:01:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16758-PB | 353 | CG16758-PB | 1..353 | 1..353 | 1866 | 100 | Plus |
CG16758-PH | 396 | CG16758-PH | 1..396 | 1..353 | 1812 | 89.1 | Plus |
CG16758-PD | 329 | CG16758-PD | 1..329 | 1..353 | 1706 | 93.2 | Plus |
CG16758-PG | 372 | CG16758-PG | 1..372 | 1..353 | 1702 | 89 | Plus |
CG16758-PE | 321 | CG16758-PE | 37..321 | 69..353 | 1494 | 100 | Plus |