Clone BO17019 Report

Search the DGRC for BO17019

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:170
Well:19
Vector:pDNR-Dual
Associated Gene/TranscriptCG16758-RB
Protein status:BO17019.pep: validated full length
Sequenced Size:1093

Clone Sequence Records

BO17019.3prime Sequence

781 bp (739 high quality bases) assembled on 2006-10-13

> BO17019.3prime
ATGGTCTAGAAAGCTTGCAGCGGATGCCAAGTGGATTTCCCGGATGAGTC
GGGAGACCAGTTCGCAGCAGGCCTTTTGCCTGTTCTTGGCCACAGCCATA
ACCTCATCGTGGTTGGCCTCATCGTCCTTCTTATCGCTGTACTCGGTGGC
GCACTTATTTGTGATGAGGCTGAAGGCGAATACCTTCATGTCGCAGTGCC
GTGCAGTGATGACCTCATGTACGGTGGACATGCCCACCGCATCCACGCCC
ATCATGCGCAGGGCCTTCAGCTCGGCGATGGTCTCGTAGTTGGGACCACC
CAGACAGGAGTATACGCCGACGTGAATGTTGGACTCTATGCCCATGGCCT
TGGCGATCTCGATGGCCTTGTTGATTAGGTCCTTGTTGTACGAGTTCACC
AGGGCGGGAAAGCGGGGTCCGAAGCGTGGGTCATTGGGTCCCTGGAGCGG
AGAATTTCCGGCAAAGCCCAGCATGTTGACATGGTCATGCATCAGCATGA
TGTCGCCCACCGCGAACCGTGGATTGATTCCACCAGCCGCATTGGTGGCG
AACAGGTATTCCACACCGCACAGCTTCATCACGCGAACCGGCATTGAGCA
CTTGGCCAGCGGATAGCCCTCGTAGAAGTGGAACCTGCCCTGCATCGCCA
TCACAGTGGCGCCCTCGAGTGTGCCGACCACCAGTCGTCCGGCATGGCCC
TCAACTGTAGATACCGGGAAGTTGGGGATCTTCTCATACTCGAAGATCTT
CGGGTCCTGGATCATATCGGCCAATGAGCCT

BO17019.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG16758-PB 1062 CG16758-RB 297..1059 781..19 3815 100 Minus
CG16758-PD 990 CG16758-RD 225..987 781..19 3815 100 Minus
CG16758-PE 966 CG16758-RE 201..963 781..19 3815 100 Minus
CG16758-PF 987 CG16758-RF 222..984 781..19 3815 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:06:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG16758-RG 1617 CG16758-RG 687..1449 781..19 3815 100 Minus
CG16758-RH 1689 CG16758-RH 759..1521 781..19 3815 100 Minus
CG16758-RF 1245 CG16758-RF 315..1077 781..19 3815 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:06:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2499689..2500369 101..781 3405 100 Plus
3L 28110227 3L 2499540..2499625 19..104 430 100 Plus
Blast to na_te.dros performed on 2015-02-10 23:06:12 has no hits.

BO17019.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:01:30 Download gff for BO17019.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16758-PF 222..987 15..781 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:28:32 Download gff for BO17019.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16758-RF 315..1081 14..781 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:20:12 Download gff for BO17019.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16758-RF 315..1081 14..781 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:20:12 Download gff for BO17019.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 2499536..2499623 14..102 97 <- Plus
3L 2499691..2500369 103..781 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:28:32 Download gff for BO17019.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2499536..2499623 14..102 97 <- Plus
arm_3L 2499691..2500369 103..781 100   Plus

BO17019.5prime Sequence

797 bp (633 high quality bases) assembled on 2006-10-13

> BO17019.5prime
GAAGTTATCAGTCGACATGACGGGTTACAAGGTGGCCAATGGCAATGGAC
ACAGCAATGGAAATGGAAACACGAAGGGAACAAATGGAACCAATGGACAC
AGCAATGGACACAAGTCGGCGGACTACACCGCCCAGGAGAATCCCACCGG
AAATGGAAAAATCCAATGCGAGCTTACGCACGAAGAGCTAAGAGCCCTTC
GGGTTCTCAACGAAGACACGTATCCCTATGAGGTCATCGAGGAGATCGCC
GACTTCATTACCAAGGGGTCCGGCATGCGCCCCAAGATCGGCATCATCTG
CGGCTCTGGGCTAGGCTCATTGGCCGATATGATCCAGGACCCGAAGATCT
TCGAGTATGAGAAGATCCCCAACTTCCCGGTATCTACAGTTGAGGGCCAT
GCCGGACGACTGGTGGTCGGCACACTCGAGGGCGCCACTGTGATGGCGAT
GCAGGGCAGGTTCCACTTCTACGAGGGCTATCCGCTGGCCAAGTGCTCAA
TGCCGGTTCGCGTGATGAAGCTGTGCGGTGTGGAATACCTGTTCGCCACC
AATGCGGCTGGTGGAATCAATCCACGGTTCGCGGTGGGCGACATCATGCT
GATGCATGACCATGTCAACATGCTGGGCTTTGCCGGAAATTCTCCGCTCC
AGGGACCCAATGACCCACGCTTCGGACCCCGCTTTCCCGCCCTGGTGAAC
TCGTACAACAAGGACCTAATCAACAAGGCCATCGAGATCGCCAAGGCCAT
GGGCATAGAGTCCAACATTCACGTCGGCGTATACTCCTGTCTGGNTG

BO17019.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG16758-PB 1062 CG16758-RB 1..778 17..794 3890 100 Plus
CG16758-PD 990 CG16758-RD 129..706 217..794 2890 100 Plus
CG16758-PE 966 CG16758-RE 108..682 220..794 2875 100 Plus
CG16758-PF 987 CG16758-RF 129..703 220..794 2875 100 Plus
CG16758-PD 990 CG16758-RD 1..131 17..147 655 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:50:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG16758-RB 1560 CG16758-RB 334..1111 17..794 3890 100 Plus
CG16758-RH 1689 CG16758-RH 594..1240 148..794 3235 100 Plus
CG16758-RD 1488 CG16758-RD 462..1039 217..794 2890 100 Plus
CG16758-RH 1689 CG16758-RH 334..464 17..147 655 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:50:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2499888..2500467 794..215 2885 99.8 Minus
3L 28110227 3L 2503143..2503273 147..17 655 100 Minus
3L 28110227 3L 2501068..2501141 221..148 370 100 Minus
Blast to na_te.dros performed on 2015-02-12 17:50:06 has no hits.

BO17019.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:01:31 Download gff for BO17019.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16758-PB 1..781 17..797 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:43:20 Download gff for BO17019.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16758-RB 323..1114 8..797 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:57:11 Download gff for BO17019.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16758-RB 323..1114 8..797 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:57:11 Download gff for BO17019.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 2499885..2500462 220..797 99 <- Minus
3L 2501070..2501141 148..219 100 <- Minus
3L 2503143..2503284 8..147 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:43:20 Download gff for BO17019.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2499885..2500462 220..797 99 <- Minus
arm_3L 2501070..2501141 148..219 100 <- Minus
arm_3L 2503143..2503284 8..147 97   Minus

BO17019.complete Sequence

1093 bp assembled on 2006-10-11

GenBank Submission: FJ634014

> BO17019.complete
GAAGTTATCAGTCGACATGACGGGTTACAAGGTGGCCAATGGCAATGGAC
ACAGCAATGGAAATGGAAACACGAAGGGAACAAATGGAACCAATGGACAC
AGCAATGGACACAAGTCGGCGGACTACACCGCCCAGGAGAATCCCACCGG
AAATGGAAAAATCCAATGCGAGCTTACGCACGAAGAGCTAAGAGCCCTTC
GGGTTCTCAACGAAGACACGTATCCCTATGAGGTCATCGAGGAGATCGCC
GACTTCATTACCAAGGGGTCCGGCATGCGCCCCAAGATCGGCATCATCTG
CGGCTCTGGGCTAGGCTCATTGGCCGATATGATCCAGGACCCGAAGATCT
TCGAGTATGAGAAGATCCCCAACTTCCCGGTATCTACAGTTGAGGGCCAT
GCCGGACGACTGGTGGTCGGCACACTCGAGGGCGCCACTGTGATGGCGAT
GCAGGGCAGGTTCCACTTCTACGAGGGCTATCCGCTGGCCAAGTGCTCAA
TGCCGGTTCGCGTGATGAAGCTGTGCGGTGTGGAATACCTGTTCGCCACC
AATGCGGCTGGTGGAATCAATCCACGGTTCGCGGTGGGCGACATCATGCT
GATGCATGACCATGTCAACATGCTGGGCTTTGCCGGAAATTCTCCGCTCC
AGGGACCCAATGACCCACGCTTCGGACCCCGCTTTCCCGCCCTGGTGAAC
TCGTACAACAAGGACCTAATCAACAAGGCCATCGAGATCGCCAAGGCCAT
GGGCATAGAGTCCAACATTCACGTCGGCGTATACTCCTGTCTGGGTGGTC
CCAACTACGAGACCATCGCCGAGCTGAAGGCCCTGCGCATGATGGGCGTG
GATGCGGTGGGCATGTCCACCGTACATGAGGTCATCACTGCACGGCACTG
CGACATGAAGGTATTCGCCTTCAGCCTCATCACAAATAAGTGCGCCACCG
AGTACAGCGATAAGAAGGACGATGAGGCCAACCACGATGAGGTTATGGCT
GTGGCCAAGAACAGGCAAAAGGCCTGCTGCGAACTGGTCTCCCGACTCAT
CCGGGAAATCCACTTGGCATCCGCTGCAAGCTTTCTAGACCAT

BO17019.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:01:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG16758-RB 1062 CG16758-PB 1..1059 17..1075 5295 100 Plus
CG16758-RH 1191 CG16758-PH 261..1188 148..1075 4640 100 Plus
CG16758-RD 990 CG16758-PD 129..987 217..1075 4295 100 Plus
CG16758-RH 1191 CG16758-PH 1..131 17..147 655 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:01:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG16758-RB 1560 CG16758-RB 334..1392 17..1075 5295 100 Plus
CG16758-RH 1689 CG16758-RH 594..1521 148..1075 4640 100 Plus
CG16758-RD 1488 CG16758-RD 462..1320 217..1075 4295 100 Plus
CG16758-RH 1689 CG16758-RH 334..464 17..147 655 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:01:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2499689..2500467 993..215 3880 99.9 Minus
3L 28110227 3L 2503143..2503273 147..17 655 100 Minus
3L 28110227 3L 2499540..2499625 1075..990 430 100 Minus
3L 28110227 3L 2501068..2501141 221..148 370 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:01:53 has no hits.

BO17019.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:25:12 Download gff for BO17019.complete
Subject Subject Range Query Range Percent Splice Strand
CG16758-RB 1..1062 17..1079 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:45:35 Download gff for BO17019.complete
Subject Subject Range Query Range Percent Splice Strand
CG16758-RB 301..1374 8..1080 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:44:02 Download gff for BO17019.complete
Subject Subject Range Query Range Percent Splice Strand
CG16758-RB 334..1392 17..1077 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:25:12 Download gff for BO17019.complete
Subject Subject Range Query Range Percent Splice Strand
CG16758-RB 301..1374 8..1080 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:13:07 Download gff for BO17019.complete
Subject Subject Range Query Range Percent Splice Strand
CG16758-RB 334..1392 17..1077 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:13:07 Download gff for BO17019.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2501070..2501141 148..219 100 <- Minus
3L 2503143..2503273 17..147 100   Minus
3L 2499691..2500462 220..991 100 <- Minus
3L 2499538..2499623 992..1077 97 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:44:02 Download gff for BO17019.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2499538..2499623 992..1077 97 <- Minus
arm_3L 2499691..2500462 220..991 100 <- Minus
arm_3L 2501070..2501141 148..219 100 <- Minus
arm_3L 2503143..2503273 17..147 100   Minus

BO17019.pep Sequence

Translation from 16 to 1093

> BO17019.pep
MTGYKVANGNGHSNGNGNTKGTNGTNGHSNGHKSADYTAQENPTGNGKIQ
CELTHEELRALRVLNEDTYPYEVIEEIADFITKGSGMRPKIGIICGSGLG
SLADMIQDPKIFEYEKIPNFPVSTVEGHAGRLVVGTLEGATVMAMQGRFH
FYEGYPLAKCSMPVRVMKLCGVEYLFATNAAGGINPRFAVGDIMLMHDHV
NMLGFAGNSPLQGPNDPRFGPRFPALVNSYNKDLINKAIEIAKAMGIESN
IHVGVYSCLGGPNYETIAELKALRMMGVDAVGMSTVHEVITARHCDMKVF
AFSLITNKCATEYSDKKDDEANHDEVMAVAKNRQKACCELVSRLIREIHL
ASAASFLDH

BO17019.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:01:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG16758-PB 353 CG16758-PB 1..353 1..353 1866 100 Plus
CG16758-PH 396 CG16758-PH 1..396 1..353 1812 89.1 Plus
CG16758-PD 329 CG16758-PD 1..329 1..353 1706 93.2 Plus
CG16758-PG 372 CG16758-PG 1..372 1..353 1702 89 Plus
CG16758-PE 321 CG16758-PE 37..321 69..353 1494 100 Plus