Clone Sequence Records
BO17024.5prime Sequence
287 bp (287 high quality bases) assembled on 2006-10-13
> BO17024.5prime
GAAGTTATCAGTCGACATGGCCAGCACCGGCGAGATCTGGCTGCAGTGGT
TTTCGTGCTGCTTCCAGCAGCAGCGCTCGCCCTCCCGCCGCCCACACCAA
CGCCTGCGCATCGACCGGTCCATGATCGGCAATCCCACCAACTTCGTCCA
CACGGGCCACATCGGATCCGCGGACGTGGAGCTGTCGGCCAACCGCCTCA
ACGCGATCTCCACCCAGATGCAGAGCAAAGGCGGCTACGAGACCAACTCG
ATACACTCGCTACATGCCTGCGCAAGCTTTCTAGACC
BO17024.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14672-PA | 258 | Spec2-RA | 1..255 | 17..271 | 1275 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:15:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spec2-RA | 1748 | CG14672-RA | 494..748 | 17..271 | 1275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:15:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5618478..5618727 | 266..17 | 1250 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 10:15:39 has no hits.
BO17024.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:01:35 Download gff for
BO17024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14672-PA | 1..258 | 17..274 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:35:51 Download gff for
BO17024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spec2-RA | 486..748 | 10..271 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:45:00 Download gff for
BO17024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spec2-RA | 486..748 | 10..271 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:45:00 Download gff for
BO17024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5618476..5618735 | 10..270 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:35:51 Download gff for
BO17024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1444198..1444457 | 10..270 | 97 | | Minus |
BO17024.3prime Sequence
287 bp (287 high quality bases) assembled on 2006-10-13
> BO17024.3prime
ATGGTCTAGAAAGCTTGCGCAGGCATGTAGCGAGTGTATCGAGTTGGTCT
CGTAGCCGCCTTTGCTCTGCATCTGGGTGGAGATCGCGTTGAGGCGGTTG
GCCGACAGCTCCACGTCCGCGGATCCGATGTGGCCCGTGTGGACGAAGTT
GGTGGGATTGCCGATCATGGACCGGTCGATGCGCAGGCGTTGGTGTGGGC
GGCGGGAGGGCGAGCGCTGCTGCTGGAAGCAGCACGAAAACCACTGCAGC
CAGATCTCGCCGGTGCTGGCCATGTCGACTGATAACT
BO17024.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14672-PA | 258 | Spec2-RA | 1..255 | 273..19 | 1275 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:09:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spec2-RA | 1748 | CG14672-RA | 494..748 | 273..19 | 1275 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:09:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5618478..5618727 | 24..273 | 1250 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:09:18 has no hits.
BO17024.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:01:34 Download gff for
BO17024.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14672-PA | 1..258 | 16..273 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:26:01 Download gff for
BO17024.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spec2-RA | 486..748 | 19..280 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:38:29 Download gff for
BO17024.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spec2-RA | 486..748 | 19..280 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:38:29 Download gff for
BO17024.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5618476..5618735 | 20..280 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:26:01 Download gff for
BO17024.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1444198..1444457 | 20..280 | 97 | | Plus |
BO17024.complete Sequence
289 bp assembled on 2006-10-11
GenBank Submission: FJ634015
> BO17024.complete
GAAGTTATCAGTCGACATGGCCAGCACCGGCGAGATCTGGCTGCAGTGGT
TTTCGTGCTGCTTCCAGCAGCAGCGCTCGCCCTCCCGCCGCCCACACCAA
CGCCTGCGCATCGACCGGTCCATGATCGGCAATCCCACCAACTTCGTCCA
CACGGGCCACATCGGATCCGCGGACGTGGAGCTGTCGGCCAACCGCCTCA
ACGCGATCTCCACCCAGATGCAGAGCAAAGGCGGCTACGAGACCAACTCG
ATACACTCGCTACATGCCTGCGCAAGCTTTCTAGACCAT
BO17024.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:03:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spec2-RA | 258 | CG14672-PA | 1..255 | 17..271 | 1275 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:03:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spec2-RA | 1748 | CG14672-RA | 494..748 | 17..271 | 1275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:03:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5618478..5618727 | 266..17 | 1250 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:03:57 has no hits.
BO17024.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:25:14 Download gff for
BO17024.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spec2-RA | 1..258 | 17..274 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:02:26 Download gff for
BO17024.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spec2-RA | 487..749 | 10..271 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:37:59 Download gff for
BO17024.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spec2-RA | 494..748 | 17..273 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:25:15 Download gff for
BO17024.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spec2-RA | 487..749 | 10..271 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:43:38 Download gff for
BO17024.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spec2-RA | 494..748 | 17..273 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:43:38 Download gff for
BO17024.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5618473..5618727 | 17..273 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:37:59 Download gff for
BO17024.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1444195..1444449 | 17..273 | 98 | | Minus |
BO17024.pep Sequence
Translation from 16 to 289
> BO17024.pep
MASTGEIWLQWFSCCFQQQRSPSRRPHQRLRIDRSMIGNPTNFVHTGHIG
SADVELSANRLNAISTQMQSKGGYETNSIHSLHACASFLDH
BO17024.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:38:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spec2-PA | 85 | CG14672-PA | 1..85 | 1..85 | 459 | 100 | Plus |
