Clone Sequence Records
BO17028.3prime Sequence
857 bp (774 high quality bases) assembled on 2006-10-13
> BO17028.3prime
ATGGTCTAGAAAGCTTGCAACCACATTGTATTTGTGTTTCTTGCCAAAGA
CTTCTATGTCCACACTAAGTCCTCTGACATCCTCTTTATGTCTTCTTGAC
GTGATTTTCCCACAAATGACGTCTCCTTCCTTCACAACCTGCGGGTTCTC
GATGAAGAAAACCGTTTGCTTCCAATGGGTGGGCGTCGCAGATGGTGATG
TGCTGAACATGACGGGGGAGGGTAGTTCAAACAATGTTTCAAAGTAACCG
ACAAAGGCGGATAATCGTCCCGGCTTCGTGACCTTTAAGCTAAACTGGTG
AGTAAAGTTTGGATAGTTCATATCGACGGTCATTATGTCGAAGTTAGCTA
TCTGTTCGGGTTCCGTCAGCATGAACTCTGCATCCACCACCTGCATGAGT
GGCTCCTCTATTGATTGCTTTCGCAGATCGCTCATGTCGACCTCGTAAAC
GTTAGACCAGAATTCCACTTCATCGGCATAAAGCGTGTCGTCTCCATAGC
CCAAGAGACTGAGTGTACAGCGACTGGGCAGTATTATGCCATTGGGGTTG
AGGTGATTCTCGCGGGCGTAGATAATGCTGTCCAGCATTGATTCGTACAA
AAGAAAATAGCCCATCCATTCGGATATTATAATGTCGTATTTAGTCTCTG
GGAGATCTGTGTCCTCCAGCCGTCCCTTGATCAGTTCAACATTCTCAACC
TTGTTCTTCCTGATGATATCCATGGCGGTGTACACAATGTCCGAGTTATC
TATGCCGACAACGCGAGCTGCACCCGCTTTGGAGGCGAAGATGGATAGGA
TTCCCGTGCCGCATCCCACATCCAACACTGTCTTGCCCCGAAACACGGCC
TCGTTTG
BO17028.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6563-PA | 1551 | Art3-RA | 711..1548 | 856..19 | 4140 | 99.7 | Minus |
| CG6563-PB | 1425 | Art3-RB | 585..1422 | 856..19 | 4140 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:57:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Art3-RB | 1804 | CG6563-RB | 918..1755 | 856..19 | 4160 | 99.8 | Minus |
| Art3-RA | 1740 | CG6563-RA | 854..1691 | 856..19 | 4160 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:57:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15227654..15228491 | 19..856 | 4160 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-01-30 17:57:49 has no hits.
BO17028.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:01:37 Download gff for
BO17028.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6563-PB | 583..1425 | 15..857 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:52:25 Download gff for
BO17028.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Art3-RA | 852..1694 | 15..857 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:06:55 Download gff for
BO17028.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Art3-RA | 852..1694 | 15..857 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:06:55 Download gff for
BO17028.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15227651..15228491 | 15..857 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:52:25 Download gff for
BO17028.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11053373..11054213 | 15..857 | 99 | | Plus |
BO17028.5prime Sequence
902 bp (748 high quality bases) assembled on 2006-10-13
> BO17028.5prime
GAAGTTATCAGTCGACATGGACGAAGGCGATGAGCTAACCACTTGTCTGT
TTTGCACCGAAACATCTGCAAACATCTCGGTGGCCATTGACCATCTTGAC
GCCCGGCATAAAGTGAATCTGTCCCAGCTTCAGCGTAAATTCGAAATGGA
CCAGTATTCCTTTATCAAACTGATAAACTACATAAGAGCCAAAAAGATCA
GTGCCGAGCAGTTATTGTCTGCGGAACATCCGCTTTGGCAGGATGAGAAG
TACCTCCAGCCCGGGGAGTATGAGCCCTGGCTCTGCTATGACTACGAAGT
CCTTAAAACAGACGGCGCTCCGACGCAGCCCTCGGTTCTGGAGCTACAAC
AGCGGATTGCTGAGCAGTCGCAATTGCTGCAGCAGGCCAACGAGGACATG
GAACGCATGCGCAACGACTACAAGGCGCTGCTGCAAAAGGTACATGCTGA
CGGCGAGCCCAAAGGTTCCGACCAGAGCGTACCGCGTAACAACGTTTGTC
TCGACAACGAATACTTCAAAAGCTACGCCCACTTTGGCATTCACCATGAA
ATGCTCAGCGACAAGGTGCGGACCAGCACCTATCGCGCGTCTTTGCTCCA
AAACGAGGCCGTTGTTCGGGGCAAGACAGTGTTGGATGTGGGATGCGGCA
CGGGAATCCTATCCATCTTCGCCTCCAAAGCGGGTGCAGCTCGCGTTGTC
GGCATAGATAACTCGGACATTGTGTACACCGCCATGGATATCATCANGAA
GAACAAGGTTGAGAATGTTGAACTGATCAAGGGACGGCTGGAGGACACAG
ATCTCCCAGAGACTAAATACGACATTATAATATCCGAATGGATGGGCTAT
TTTCTTTTGTACGAATCAATGCTGGACAGCATTATCTACGCCCGCGAAGA
TC
BO17028.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6563-PA | 1551 | Art3-RA | 127..1007 | 17..897 | 4386 | 99.8 | Plus |
| CG6563-PB | 1425 | Art3-RB | 1..881 | 17..897 | 4386 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:16:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Art3-RB | 1804 | CG6563-RB | 334..1214 | 17..897 | 4394 | 99.9 | Plus |
| Art3-RA | 1740 | CG6563-RA | 270..1150 | 17..897 | 4394 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:16:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15228195..15229075 | 897..17 | 4394 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:16:03 has no hits.
BO17028.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:01:37 Download gff for
BO17028.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6563-PB | 1..886 | 17..902 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:46:38 Download gff for
BO17028.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Art3-RA | 262..1155 | 7..902 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:28:04 Download gff for
BO17028.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Art3-RA | 262..1155 | 7..902 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:28:04 Download gff for
BO17028.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15228190..15229083 | 7..902 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:46:38 Download gff for
BO17028.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11053912..11054805 | 7..902 | 99 | | Minus |
BO17028.complete Sequence
1456 bp assembled on 2006-10-11
GenBank Submission: FJ634016
> BO17028.complete
GAAGTTATCAGTCGACATGGACGAAGGCGATGAGCTAACCACTTGTCTGT
TTTGCACCGAAACATCTGCAAACATCTCGGTGGCCATTGACCATCTTGAC
GCCCGGCATAAAGTGAATCTGTCCCAGCTTCAGCGTAAATTCGAAATGGA
CCAGTATTCCTTTATCAAACTGATAAACTACATAAGAGCCAAAAAGATCA
GTGCCGAGCAGTTATTGTCTGCGGAACATCCGCTTTGGCAGGATGAGAAG
TACCTCCAGCCCGGGGAGTATGAGCCCTGGCTCTGCTATGACTACGAAGT
CCTTAAAACAGACGGCGCTCCGACGCAGCCCTCGGTTCTGGAGCTACAAC
AGCGGATTGCTGAGCAGTCGCAATTGCTGCAGCAGGCCAACGAGGACATG
GAACGCATGCGCAACGACTACAAGGCGCTGCTGCAAAAGGTACATGCTGA
CGGCGAGCCCAAAGGTTCCGACCAGAGCGTACCGCGTAACAACGTTTGTC
TCGACAACGAATACTTCAAAAGCTACGCCCACTTTGGCATTCACCATGAA
ATGCTCAGCGACAAGGTGCGGACCAGCACCTATCGCGCGTCTTTGCTCCA
AAACGAGGCCGTTGTTCGGGGCAAGACAGTGTTGGATGTGGGATGCGGCA
CGGGAATCCTATCCATCTTCGCCTCCAAAGCGGGTGCAGCTCGCGTTGTC
GGCATAGATAACTCGGACATTGTGTACACCGCCATGGATATCATCAGGAA
GAACAAGGTTGAGAATGTTGAACTGATCAAGGGACGGCTGGAGGACACAG
ATCTCCCAGAGACTAAATACGACATTATAATATCCGAATGGATGGGCTAT
TTTCTTTTGTACGAATCAATGCTGGACAGCATTATCTACGCCCGCGAGAA
TCACCTCAACCCCAATGGCATAATACTGCCCAGTCGCTGTACACTCAGTC
TCTTGGGCTATGGAGACGACACGCTTTATGCCGATGAAGTGGAATTCTGG
TCTAACGTTTACGAGGTCGACATGAGCGATCTGCGAAAGCAATCAATAGA
GGAGCCACTCATGCAGGTGGTGGATGCAGAGTTCATGCTGACGGAACCCG
AACAGATAGCTAACTTCGACATAATGACCGTCGATATGAACTATCCAAAC
TTTACTCACCAGTTTAGCTTAAAGGTCACGAAGCCGGGACGATTATCCGC
CTTTGTCGGTTACTTTGAAACATTGTTTGAACTACCCTCCCCCGTCATGT
TCAGCACATCACCATCTGCGACGCCCACCCATTGGAAGCAAACGGTTTTC
TTCATCGAGAACCCGCAGGTTGTGAAGGAAGGAGACGTCATTTGTGGGAA
AATCACGTCAAGAAGACATAAAGAGGATGTCAGAGGACTTAGTGTGGACA
TAGAAGTCTTTGGCAAGAAACACAAATACAATGTGGTTGCAAGCTTTCTA
GACCAT
BO17028.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:01:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Art3-RB | 1425 | CG6563-PB | 1..1422 | 17..1438 | 7110 | 100 | Plus |
| Art3-RA | 1551 | CG6563-PA | 127..1548 | 17..1438 | 7110 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:01:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Art3-RB | 1804 | CG6563-RB | 334..1755 | 17..1438 | 7110 | 100 | Plus |
| Art3-RA | 1740 | CG6563-RA | 270..1691 | 17..1438 | 7110 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:01:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15227654..15229075 | 1438..17 | 7110 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 17:01:04 has no hits.
BO17028.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:25:16 Download gff for
BO17028.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Art3-RB | 1..1425 | 17..1442 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:45:37 Download gff for
BO17028.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Art3-RB | 357..1789 | 7..1442 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:27 Download gff for
BO17028.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Art3-RA | 270..1691 | 17..1440 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:25:16 Download gff for
BO17028.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Art3-RB | 357..1789 | 7..1442 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:32:30 Download gff for
BO17028.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Art3-RA | 270..1691 | 17..1440 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:32:30 Download gff for
BO17028.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15227652..15229075 | 17..1440 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:27 Download gff for
BO17028.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11053374..11054797 | 17..1440 | 99 | | Minus |
BO17028.pep Sequence
Translation from 16 to 1456
> BO17028.pep
MDEGDELTTCLFCTETSANISVAIDHLDARHKVNLSQLQRKFEMDQYSFI
KLINYIRAKKISAEQLLSAEHPLWQDEKYLQPGEYEPWLCYDYEVLKTDG
APTQPSVLELQQRIAEQSQLLQQANEDMERMRNDYKALLQKVHADGEPKG
SDQSVPRNNVCLDNEYFKSYAHFGIHHEMLSDKVRTSTYRASLLQNEAVV
RGKTVLDVGCGTGILSIFASKAGAARVVGIDNSDIVYTAMDIIRKNKVEN
VELIKGRLEDTDLPETKYDIIISEWMGYFLLYESMLDSIIYARENHLNPN
GIILPSRCTLSLLGYGDDTLYADEVEFWSNVYEVDMSDLRKQSIEEPLMQ
VVDAEFMLTEPEQIANFDIMTVDMNYPNFTHQFSLKVTKPGRLSAFVGYF
ETLFELPSPVMFSTSPSATPTHWKQTVFFIENPQVVKEGDVICGKITSRR
HKEDVRGLSVDIEVFGKKHKYNVVASFLDH
BO17028.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:18:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Art3-PB | 474 | CG6563-PB | 1..474 | 1..474 | 2474 | 100 | Plus |
| Art3-PA | 516 | CG6563-PA | 43..516 | 1..474 | 2474 | 100 | Plus |
| Art1-PA | 376 | CG6554-PA | 31..358 | 140..464 | 636 | 40.4 | Plus |
| Art6-PA | 341 | CG9927-PA | 16..322 | 163..464 | 521 | 38.5 | Plus |
| Art2-PB | 355 | CG3675-PB | 30..347 | 163..478 | 468 | 34.4 | Plus |
