Clone Sequence Records
BO17031.3prime Sequence
718 bp (641 high quality bases) assembled on 2006-10-13
> BO17031.3prime
ATGGTCTAGAAAGCTTGCGTAAACCAGGCGGATGGCCTGCTGTCCGTGGT
AAATATCGCTCCTAACAAGAACTTCATAGTTGCTCAGACGGATCTCTTGG
CCACCGAATGGGATCTGGAGGCATCGGTTGTAGGTCTCAATTACACCGGG
TGTCAAGCTGCCGCAGTAGTGACCCCGTCCAATGTAGAGTGGTGCTCCGC
CAGGTGTCGTTCCGGCCACAACTGCTCCAGGTGGAACGTTTCCGCCGTAG
GATGGCACCCAGTGGTATTTGCCCTTGCCCACCAGCATTTGGTACGATGG
CTCAATGATTTCACGACCCCCGTGGGCTATGTAGCCACATCCCTGGCTGG
GAATGGCCTTGCCAGGAACATGGACACCACGGTAGTAGGCCCGGCAAACC
AGCAATTGCTCCATGTTGCTGTCATGACCTCCAATCACGGCATCGGGAGA
GTAATAATAGCCCGGTTCGGCTGATACCCAAACGTCATAGTTGTTGCCAT
AGCCGTAGGCGTCATATGCCGAAGGAGCAGCACACTCGGCCGGAGTGTAG
GACGAGCATCCCGCCTCGTAGGGATTATAGGTGGAAGCGGGTGTAAACGA
TGGTGCCACGGGAACGGATACTGCGGTCACCTCTGCGGGAACAAATGATG
GCGGTGGCGCCACCTCAGCTGGAGTGAACGATGGANGAGGAGGTGGCATG
ACCCACACACCACCTGCA
BO17031.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:59:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3884-PA | 1437 | CG3884-RA | 735..1434 | 718..19 | 3456 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:15:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG44251-RB | 1796 | CG44251-RB | 788..1487 | 718..19 | 3474 | 99.7 | Minus |
| CG44251-RA | 1860 | CG44251-RA | 852..1551 | 718..19 | 3474 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:15:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12948657..12949356 | 19..718 | 3474 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:15:26 has no hits.
BO17031.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:01:41 Download gff for
BO17031.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3884-PA | 736..1437 | 16..717 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:14:52 Download gff for
BO17031.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44251-RA | 853..1556 | 14..717 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:19:37 Download gff for
BO17031.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44251-RA | 853..1556 | 14..717 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:19:37 Download gff for
BO17031.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12948652..12949355 | 14..717 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:14:52 Download gff for
BO17031.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8836157..8836860 | 14..717 | 99 | | Plus |
BO17031.5prime Sequence
731 bp (664 high quality bases) assembled on 2006-10-13
> BO17031.5prime
GAAGTTATCAGTCGACATGGCCTACAAGTGGGTTCAATCCTCGGCCTACT
CCTCCCTTCCCGAGGAGGCAGTGGTGGGCGGCAACGATGAGGACGGCGCC
ATGATATACGTGGGCAGGGCGGAGCACGAGGGCGATATGTTGGTCTGTAA
GGTGGTGCCGAGCAAGCAACTGGGATTCATTTCGCAGCGAGGAGAGGCAC
TGCCCAAGGACATCTTCGAGGTGCTGTGCGGTCAGAATTTGGTATGGATC
AAGTGCTACGATCATGTGATTCCGGAGAATGCTGTACTCTGTGGACGCAC
ATCACTGGATCAGCCGGTGTACATTGGTCGTGGTCATTACGAGGGTCATC
TGATTATCGGCAAAATCTCCTCTGTCCATCGAGCTTTGTTCATCGCCTTT
CGCGGTGCCGAACGTCGTCTGGATTCCTATGAGATTTTGGTGGAGGAGCG
CAGAGTGGTTCCTGGCTGGCAGCTGCCGCCACCACCTCCTCCACTAGAGG
AGCCGGAAAAGTGTCCACTATCGCCGCCGCCACCACCTTCTCCACCGGCA
ATGGCGCCGCCACTGCCGGCCAAACCATATCCATATCCGGATTTGGCTGC
CATGCCATTTCCTGACAGGCCTCCGGCCTACACACCCACTCCGGATCCCA
TGCCACCCGTTGGAGGTGTGATGGTGATGCCGAGTCCAACCCCACCACGC
CGGCGGGAGGAGTGCTGGTCATGCCACGACC
BO17031.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:59:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3884-PA | 1437 | CG3884-RA | 1..716 | 17..731 | 3340 | 98.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:53:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG44251-RA | 1860 | CG44251-RA | 118..833 | 17..731 | 3435 | 98.7 | Plus |
| CG44251-RB | 1796 | CG44251-RB | 57..769 | 20..731 | 3420 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:53:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12949375..12950087 | 731..20 | 3395 | 98.7 | Minus |
Blast to na_te.dros performed on 2015-02-13 12:53:06 has no hits.
BO17031.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:01:42 Download gff for
BO17031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3884-PA | 1..716 | 17..731 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 19:04:50 Download gff for
BO17031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44251-RA | 118..833 | 17..731 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:37:21 Download gff for
BO17031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44251-RA | 118..833 | 17..731 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:37:21 Download gff for
BO17031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12949375..12950089 | 16..731 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 19:04:50 Download gff for
BO17031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8836880..8837594 | 16..731 | 98 | | Minus |
BO17031.complete Sequence
1468 bp assembled on 2007-03-23
GenBank Submission: FJ634017
> BO17031.complete
GAAGTTATCAGTCGACATGGCCTACAAGTGGGTTCAATCCTCGGCCTACT
CCTCCCTTCCCGAGGAGGCAGTGGTGGGCGGCAACGATGAGGACGGCGCC
ATGATATACGTGGGCAGGGCGGAGCACGAGGGCGATATGTTGGTCTGTAA
GGTGGTGCCGAGCAAGCAACTGGGATTCATTTCGCAGCGAGGAGAGGCAC
TGCCCAAGGACATCTTCGAGGTGCTGTGCGGTCAGAATTTGGTATGGATC
AAGTGCTACGATCATGTGATTCCGGAGAATGCTGTACTCTGTGGACGCAC
ATCACTGGATCAGCCGGTGTACATTGGTCGTGGTCATTACGAGGGTCATC
TGATTATCGGCAAAATCTCCTCTGTCCATCGAGCTTTGTTCATCGCCTTT
CGCGGTGCCGAACGTCGTCTGGATTCCTATGAGATTTTGGTGGAGGAGCG
CAGAGTGGTTCCTGGCTGGCAGCTGCCGCCACCACCTCCTCCACTAGAGG
AGCCGGAAAAGTGTCCACTATCGCCGCCGCCACCACCTTCTCCACCGGCA
ATGGCGCCGCCACTGCCGGCCAAACCATATCCATATCCGGATTTGGCTGC
CATGCCATTTCCTGACAGGCCTCCGGCCTACACACCCACTCCGGATCCCA
TGCCACCCGTTGGAGGTGTGATGGTGATGCCGAGTCCAACCCCACCACCG
CCGGCGGGAGGAGTGCTGGTCATGCCACGACCACCACCACCACCACCGCC
TGCAGGTGGTGTGTTGGTCATGCCACCTCCTCCTCCATCGTTCACTCCAG
CTGAGGTGGCGCCACCGCCATCATTTGTTCCCGCAGAGGTGACCGCAGTA
TCCGTTCCCGTGGCACCATCGTTTACACCCGCTTCCACCTATAATCCCTA
CGAGGCGGGATGCTCGTCCTACACTCCGGCCGAGTGTGCTGCTCCTTCGG
CATATGACGCCTACGGCTATGGCAACAACTATGACGTTTGGGTATCAGCC
GAACCGGGCTATTATTACTCTCCCGATGCCGTGATTGGAGGTCATGACAG
CAACATGGAGCAATTGCTGGTTTGCCGGGCCTACTACCGTGGTGTCCATG
TTCCTGGCAAGGCCATTCCCAGCCAGGGATGTGGCTACATAGCCCACGGG
GGTCGTGAAATCATTGAGCCATCGTACCAAATGCTGGTGGGCAAGGGCAA
ATACCACTGGGTGCCATCCTACGGCGGAAACGTTCCACCTGGAGCAGTTG
TGGCCGGAACGACACCTGGCGGAGCACCACTCTACATTGGACGGGGTCAC
TACTGCGGCAGCTTGACACCCGGTGTAATTGAGACCTACAACCGATGCCT
CCAGATCCCATTCGGTGGCCAAGAGATCCGTCTGAGCAACTATGAAGTTC
TTGTTAGGAGCGATATTTACCACGGACAGCAGGCCATCCGCCTGGTTTAC
GCAAGCTTTCTAGACCAT
BO17031.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:58:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG44251-RA | 1437 | CG44251-PA | 1..1434 | 17..1450 | 7050 | 99.4 | Plus |
| CG44251-RB | 1353 | CG44251-PB | 1..1350 | 101..1450 | 6630 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:58:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG44251-RA | 1860 | CG44251-RA | 118..1551 | 17..1450 | 7050 | 99.4 | Plus |
| CG44251-RB | 1796 | CG44251-RB | 57..1487 | 20..1450 | 7035 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:58:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12948657..12950087 | 1450..20 | 7035 | 99.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:58:08 has no hits.
BO17031.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:10:52 Download gff for
BO17031.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3884-RA | 1..1437 | 17..1453 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:28:49 Download gff for
BO17031.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3884-RA | 111..1547 | 17..1453 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:36:57 Download gff for
BO17031.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44251-RA | 118..1551 | 17..1452 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:10:55 Download gff for
BO17031.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3884-RA | 111..1547 | 17..1453 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:30:56 Download gff for
BO17031.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44251-RA | 118..1551 | 17..1452 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:30:56 Download gff for
BO17031.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12948654..12950088 | 17..1452 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:36:57 Download gff for
BO17031.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8836159..8837593 | 17..1452 | 99 | | Minus |
BO17031.pep Sequence
Translation from 16 to 1468
> BO17031.pep
MAYKWVQSSAYSSLPEEAVVGGNDEDGAMIYVGRAEHEGDMLVCKVVPSK
QLGFISQRGEALPKDIFEVLCGQNLVWIKCYDHVIPENAVLCGRTSLDQP
VYIGRGHYEGHLIIGKISSVHRALFIAFRGAERRLDSYEILVEERRVVPG
WQLPPPPPPLEEPEKCPLSPPPPPSPPAMAPPLPAKPYPYPDLAAMPFPD
RPPAYTPTPDPMPPVGGVMVMPSPTPPPPAGGVLVMPRPPPPPPPAGGVL
VMPPPPPSFTPAEVAPPPSFVPAEVTAVSVPVAPSFTPASTYNPYEAGCS
SYTPAECAAPSAYDAYGYGNNYDVWVSAEPGYYYSPDAVIGGHDSNMEQL
LVCRAYYRGVHVPGKAIPSQGCGYIAHGGREIIEPSYQMLVGKGKYHWVP
SYGGNVPPGAVVAGTTPGGAPLYIGRGHYCGSLTPGVIETYNRCLQIPFG
GQEIRLSNYEVLVRSDIYHGQQAIRLVYASFLDH
BO17031.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:37:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG44251-PA | 478 | CG44251-PA | 1..478 | 1..478 | 2636 | 100 | Plus |
| CG44251-PB | 450 | CG44251-PB | 1..450 | 29..478 | 2490 | 100 | Plus |
| CG44250-PB | 286 | CG44250-PB | 3..143 | 323..464 | 391 | 50 | Plus |
| CG44250-PC | 297 | CG44250-PC | 14..154 | 323..464 | 391 | 50 | Plus |
| CG13321-PB | 286 | CG13321-PB | 146..285 | 323..464 | 358 | 47.2 | Plus |
| CG44250-PB | 286 | CG44250-PB | 146..285 | 322..464 | 354 | 49 | Plus |
| CG44250-PC | 297 | CG44250-PC | 157..296 | 322..464 | 354 | 49 | Plus |
| CG44250-PB | 286 | CG44250-PB | 5..159 | 5..159 | 338 | 43.2 | Plus |
| CG44250-PC | 297 | CG44250-PC | 16..170 | 5..159 | 338 | 43.2 | Plus |
| CG44250-PB | 286 | CG44250-PB | 149..286 | 5..144 | 296 | 46.4 | Plus |
| CG44250-PC | 297 | CG44250-PC | 160..297 | 5..144 | 296 | 46.4 | Plus |
| CG44251-PB | 450 | CG44251-PB | 297..435 | 5..142 | 222 | 36 | Plus |
| CG44250-PB | 286 | CG44250-PB | 53..213 | 312..462 | 212 | 34.6 | Plus |
| CG44250-PC | 297 | CG44250-PC | 64..224 | 312..462 | 212 | 34.6 | Plus |
| CG44250-PB | 286 | CG44250-PB | 75..213 | 3..141 | 191 | 33.6 | Plus |
| CG44250-PC | 297 | CG44250-PC | 86..224 | 3..141 | 191 | 33.6 | Plus |
