Clone Sequence Records
BO17033.3prime Sequence
272 bp (272 high quality bases) assembled on 2006-10-13
> BO17033.3prime
ATGGTCTAGAAAGCTTGCCGGACACTCCTTGTCGCTGATCTTTTGAAAGT
TTGCATTCTGGAGACAATTTTCCGTCTTCATCACGCACAGATTGCGATAG
GTCTTGGTGGAGCCCTTGTCGTCCGCAGCGCAAATGGATCGGTACTCCTG
CGTGTCGCACTCCATGACGCACTTGGTGCTGGGATCGGGCAGGCCGAGGC
ACTGGACCAGCGAGAGGGCAAGCAGCGCGATGGCCAACAATACTGCTGAG
AGCTTCATGTCGACTGATAACT
BO17033.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17278-PA | 243 | CG17278-RA | 1..240 | 258..19 | 1150 | 99.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:58:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17278-RA | 1934 | CG17278-RA | 1464..1705 | 260..19 | 1180 | 99.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:57:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21021405..21021584 | 51..230 | 885 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-01-30 17:58:01 has no hits.
BO17033.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:01:43 Download gff for
BO17033.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17278-PA | 1..243 | 18..258 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:52:28 Download gff for
BO17033.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17278-RA | 1464..1712 | 12..260 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:06:58 Download gff for
BO17033.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17278-RA | 1464..1712 | 12..260 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:06:58 Download gff for
BO17033.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21021405..21021584 | 51..230 | 99 | <- | Plus |
3R | 21022671..21022700 | 231..260 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:52:28 Download gff for
BO17033.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16847127..16847306 | 51..230 | 99 | <- | Plus |
arm_3R | 16848393..16848422 | 231..260 | 100 | | Plus |
BO17033.5prime Sequence
272 bp (272 high quality bases) assembled on 2006-10-13
> BO17033.5prime
GAAGTTATCAGTCGACATGAAGCTCTCAGCAGTATTGTTGGCCATCGCGC
TGCTTGCCCTCTCGCTGGTCCAGTGCCTCGGCCTGCCCGATCCCAGCACC
AAGTGCGTCATGGAGTGCGACACGCAGGAGTACCGATCCATTTGCGCTGC
GGACGACAAGGGCTCCACCAAGACCTATCGCAATCTGTGCGTGATGAAGA
CGGAAAATTGTCTCCAGAATGCAAACTTTCAAAAGATCAGCGACAAGGAG
TGTCCGGCAAGCTTTCTAGACC
BO17033.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17278-PA | 243 | CG17278-RA | 1..240 | 17..256 | 1150 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:50:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17278-RA | 1934 | CG17278-RA | 1464..1705 | 15..256 | 1180 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:50:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21021405..21021584 | 224..45 | 885 | 99.4 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:50:36 has no hits.
BO17033.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:01:44 Download gff for
BO17033.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17278-PA | 1..243 | 17..257 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:43:31 Download gff for
BO17033.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17278-RA | 1464..1712 | 15..263 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:59:09 Download gff for
BO17033.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17278-RA | 1464..1712 | 15..263 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:59:09 Download gff for
BO17033.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21021405..21021584 | 45..224 | 99 | <- | Minus |
3R | 21022671..21022700 | 15..44 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:43:31 Download gff for
BO17033.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16847127..16847306 | 45..224 | 99 | <- | Minus |
arm_3R | 16848393..16848422 | 15..44 | 100 | | Minus |
BO17033.complete Sequence
274 bp assembled on 2006-10-11
GenBank Submission: FJ634018
> BO17033.complete
GAAGTTATCAGTCGACATGAAGCTCTCAGCAGTATTGTTGGCCATCGCGC
TGCTTGCCCTCTCGCTGGTCCAGTGCCTCGGCCTGCCCGATCCCAGCACC
AAGTGCGTCATGGAGTGCGACACGCAGGAGTACCGATCCATTTGCGCTGC
GGACGACAAGGGCTCCACCAAGACCTATCGCAATCTGTGCGTGATGAAGA
CGGAAAATTGTCTCCAGAATGCAAACTTTCAAAAGATCAGCGACAAGGAG
TGTCCGGCAAGCTTTCTAGACCAT
BO17033.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:42:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17278-RA | 243 | CG17278-PA | 1..240 | 17..256 | 1170 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:42:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17278-RA | 1934 | CG17278-RA | 1464..1705 | 15..256 | 1180 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:42:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21021405..21021584 | 224..45 | 885 | 99.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:42:51 has no hits.
BO17033.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:25:18 Download gff for
BO17033.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17278-RA | 1..243 | 17..257 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:45:38 Download gff for
BO17033.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17278-RA | 1464..1712 | 15..263 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:22:54 Download gff for
BO17033.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17278-RA | 1466..1705 | 17..258 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:25:18 Download gff for
BO17033.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17278-RA | 1464..1712 | 15..263 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:54:13 Download gff for
BO17033.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17278-RA | 1466..1705 | 17..258 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:54:13 Download gff for
BO17033.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21021271..21021304 | 225..258 | 91 | <- | Minus |
3R | 21021405..21021584 | 45..224 | 99 | <- | Minus |
3R | 21022671..21022698 | 17..44 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:22:54 Download gff for
BO17033.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16846993..16847026 | 225..258 | 91 | <- | Minus |
arm_3R | 16847127..16847306 | 45..224 | 99 | <- | Minus |
arm_3R | 16848393..16848420 | 17..44 | 100 | | Minus |
BO17033.pep Sequence
Translation from 16 to 274
> BO17033.pep
MKLSAVLLAIALLALSLVQCLGLPDPSTKCVMECDTQEYRSICAADDKGS
TKTYRNLCVMKTENCLQNANFQKISDKECPASFLDH
BO17033.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:36:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17278-PA | 80 | CG17278-PA | 1..80 | 1..80 | 419 | 100 | Plus |