Clone Sequence Records
BO17046.complete Sequence
2374 bp assembled on 2010-04-13
GenBank Submission: KX800082
> BO17046.complete
GAAGTTATCAGTCGACATGGCCGAAGCCCATGCCGCCGTGGCATTCTCGT
TTGCCATCACCCATGAGGGCTTCGACATCAACTATGACCACGAGGTGCTC
AATTTGGTGTGGAACTCAGGAGTTCGTTCCTGGAAAAAGCGATTGGCTCG
CGCAAGGAACGGCGTACGCAATGGCGTCTATCCGGCTCACATCCAGAGCC
TCTGGTTGATCTCAGCAATAGCGCTGGGTCTACACTTTGCGGGCTACCAG
GCTCCATTCAATCTGACCAACCGTATACTGGTGCACCTGCCTTCCAACAC
GATAAACTGGCAGGTTACCGCCTGCTTTTTGGCCGCTCTGGTGGTCTGGC
TATCGATCTGTTTCACCATGAGATACACTCTCAAGCTGCTGCTCATGTAC
AAGGGCTGGATGTACGAGTCCAGAGCTCCCGGTAGTCGTGTCTCTCTGCC
CACCATGTTGTGGGTGGCAGTGGTGCGGGTTCTATCTAGTTGGAACAAAC
CGGGTCTGTACAGCTTCCAGGGTTCTCTGCCCAGGCTGCCACTGCCCTCC
GTTAAAGACACGATGACCAGGTACTTGCGCAGTGTTCGACCGCTGCTTGA
TGATGAGAACTACACGCGCATGGAGCGCCTGGCCAAAGAATTCGAACAGA
CCATCGGCAAGAAGCTGCAGTGGTACCTCATCCTCAAGAGCTGGTGGTCC
ACCAACTACGTGTCGGATTGGTGGGAGGAGTACGTCTACCTTCGTGGTCG
CAGTCCCCTCTGCGTGAACAGCAACTTCTACGGCACGGATGCGATCTTCA
TGAACCTCACCGACAAACAGGCGGCGCGTGCGGCCAATGTGATTTCCCTG
CTTCTCAACTTCCGTCGACTTATCGAGCACCAGGAACTGCAGCCTATCAT
GGTTCAGGGCATGATTCCTCTGTGCTCCTGGCAGTATGAACGTACCTTCA
ACACAGCACGCGTGCCAGGCCTGGAAACCGATCGTATCATCCACTACAGG
GACTCCAATCACATTGTGGTTCTCCACAAGGGCTGCTACTACAAGATGCT
CATCTACTACAAGGGTCGCATCCTGCGCCCATGCGAATTGCAAGTGCAAA
TTGAGGAAATCCTGAAGGGCAAAGCAACTCCCGTGGAAGGTGAGGAGCAC
TTGGCTGCCCTGACCGCCTGGAATCGCTCCAAGTGGGCGGAAGCTCGCAA
CACATTCTTCTCGTGGGGAGTCAATCAAACCTCTCTGCGCACCATCGAGT
CGGCCGCTTTTGTGCTCTCCCTGGATGATGAGCCCTTCGAGTTCGATTTG
GCGCGACCGGAATTGCTGGACAACTTTGGCAAGAAGCTGCTGCACGGCAA
TGGCTACAACCGCTGGTTTGACAAGTGTTTCACTGTCTGTGTGGGCACCA
ATGGTCGCGTTGGCTTCAATGCCGAACACACCTGGGCCGATGCACCGGTT
TTGGGACACCTGTGGGAGTATATATTTGGTGATGATATTTATGGATATGA
CGAAACGGGTAATACAAAGGGCACCCCGGCGTTCCAGCCACCCACGCCCA
CTAGGCTCACTTGGGATCTTAAACCATGCCTGGCGCAGATCGAAGAGGCC
ACCATCGATGTGACGAAGCTTATCAACGAGGTCAATCTGCGCATCCTGGT
GCACCAGGATTACGGCAAGGGCTTTATGAAGAAGTGCCGCATCTCACCAG
ATGCCTACATACAAATGGCCCTGCAGTTGGCCTACTACCGAGATGCCGGT
CGCTTCTCGTTGACATATGAGGCTTCAATGACCCGTCTGTTCCGCGAAGG
AAGAACTGAGACAGTGCGTCCGTGCACCATTGAGTCATCCGCCTGGGTCA
AGGCCATGCAGAACCCAAATACAACCAACGATGAGCGTGTGAAGATGATG
CAGGCTGCCTGCGATCGTCACCAGTTGGGCTACCAGGATGCCATGTGCGG
TCGTGGCATCGACAGGCATCTGTTCTGCCTGTATGTGGTCTCCAAGTACC
TGGAGGTGGATTCACCCTTCCTCAACGAGGTGCTCAGCGAACCCTGGCGC
CTCTCTACTAGTCAGACTCCGCACGGCCAGACGCCCAAGATGGACCTGAA
GAAGCATCCGAACTGCATCAGCGCTGGAGGCGGCTTTGGGCCCGTGGCCG
ATGATGGTTACGGTGTGTCGTACATTATTGCCGGAGAGAACCTGATATTC
TTCCATATCTCAGCGAAGACTACGTGCCAGCAAACGGATGTGCACCGCTT
CGCTCAGAACATATCGCAGGCTCTGTCAGACATTCGCAGCATGTTCGAGC
AGCACATGAAGGACCATCCGAAGCCCGCCAAATCACTCACAAACGGCAAA
TCCACAGCAAGCTTTCTAGACCAT
BO17046.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:14:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| whd-RA | 2343 | CG12891-PA | 1..2340 | 17..2356 | 11700 | 100 | Plus |
| whd-RB | 2343 | CG12891-PB | 1..2340 | 17..2356 | 11700 | 100 | Plus |
| whd-RC | 2349 | CG12891-PC | 1..2346 | 17..2356 | 11260 | 98.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:14:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| whd-RA | 2882 | CG12891-RA | 250..2589 | 17..2356 | 11700 | 100 | Plus |
| whd-RB | 2901 | CG12891-RB | 269..2608 | 17..2356 | 11700 | 100 | Plus |
| whd-RC | 2888 | CG12891-RC | 250..2595 | 17..2356 | 11260 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:14:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10472475..10473213 | 895..157 | 3695 | 100 | Minus |
| 2R | 25286936 | 2R | 10470368..10470750 | 1876..1494 | 1915 | 100 | Minus |
| 2R | 25286936 | 2R | 10469945..10470305 | 2237..1877 | 1805 | 100 | Minus |
| 2R | 25286936 | 2R | 10471617..10471956 | 1435..1096 | 1700 | 100 | Minus |
| 2R | 25286936 | 2R | 10472015..10472215 | 1096..896 | 1005 | 100 | Minus |
| 2R | 25286936 | 2R | 10473269..10473409 | 157..17 | 705 | 100 | Minus |
| 2R | 25286936 | 2R | 10469766..10469886 | 2356..2236 | 605 | 100 | Minus |
| 2R | 25286936 | 2R | 10471214..10471274 | 1494..1434 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:14:17 has no hits.
BO17046.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:26:26 Download gff for
BO17046.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CPTI-RA | 251..2590 | 17..2358 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:06:12 Download gff for
BO17046.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| whd-RB | 269..2608 | 17..2358 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:16:35 Download gff for
BO17046.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| whd-RB | 269..2608 | 17..2358 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:16:35 Download gff for
BO17046.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10469764..10469885 | 2237..2358 | 98 | <- | Minus |
| 2R | 10469946..10470305 | 1877..2236 | 100 | <- | Minus |
| 2R | 10470368..10470749 | 1495..1876 | 100 | <- | Minus |
| 2R | 10471214..10471273 | 1435..1494 | 100 | <- | Minus |
| 2R | 10471618..10471956 | 1096..1434 | 100 | <- | Minus |
| 2R | 10472016..10472215 | 896..1095 | 100 | <- | Minus |
| 2R | 10472475..10473212 | 158..895 | 100 | <- | Minus |
| 2R | 10473269..10473409 | 17..157 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:06:12 Download gff for
BO17046.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6357269..6357390 | 2237..2358 | 98 | <- | Minus |
| arm_2R | 6357451..6357810 | 1877..2236 | 100 | <- | Minus |
| arm_2R | 6357873..6358254 | 1495..1876 | 100 | <- | Minus |
| arm_2R | 6358719..6358778 | 1435..1494 | 100 | <- | Minus |
| arm_2R | 6359123..6359461 | 1096..1434 | 100 | <- | Minus |
| arm_2R | 6359521..6359720 | 896..1095 | 100 | <- | Minus |
| arm_2R | 6359980..6360717 | 158..895 | 100 | <- | Minus |
| arm_2R | 6360774..6360914 | 17..157 | 100 | | Minus |
BO17046.3prime Sequence
800 bp (797 high quality bases) assembled on 2006-10-13
> BO17046.3prime
ATGGTCTAGAAAGCTTGCTGTGGATTTGCCGTTTGTGAGTGATTTGGCGG
GCTTCGGATGGTCCTTCATGTGCTGCTCGAACATGCTGCGAATGTCTGAC
AGAGCCTGCGATATGTTCTGAGCGAAGCGGTGCACATCCGTTTGCTGGCA
CGTAGTCTTCGCTGAGATATGGAAGAATATCAGGTTCTCTCCGGCAATAA
TGTACGACACACCGTAACCATCATCGGCCACGGGCCCAAAGCCGCCTCCA
GCGCTGATGCAGTTCGGATGCTTCTTCAGGTCCATCTTGGGCGTCTGGCC
GTGCGGAGTCTGACTAGTAGAGAGGCGCCAGGGTTCGCTGAGCACCTCGT
TGAGGAAGGGTGAATCCACCTCCAGGTACTTGGAGACCACATACAGGCAG
AACAGATGCCTGTCGATGCCACGACCGCACATGGCATCCTGGTAGCCCAA
CTGGTGACGATCGCAGGCAGCCTGCATCATCTTCACACGCTCATCGTTGG
TTGTATTTGGGTTCTGCATGGCCTTGACCCAGGCGGATGACTCAATGGTG
CACGGACGCACTGTCTCAGTTCTTCCTTCGCGGAACAGACGGGTCATTGA
AGCCTCATATGTCAACGAGAAGCGACCGGCATCTCGGTAGTAGGCCAACT
GCAGGGCCATTTGTATGTAGGCATCTGGTGAGATGCGGCACTTCTTCATA
AAGCCCTTGCCGTAATCCTGGTGCACCAGGATGCGCAGATTGACCTCGTT
GATAAGCTTCGTCACATCGATGGTGGCCTCTTCGATCTGCGCCAGGCATG
BO17046.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:01:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12891-PB | 2343 | CPTI-RB | 1559..2340 | 800..19 | 3910 | 100 | Minus |
| CG12891-PA | 2343 | CPTI-RA | 1559..2340 | 800..19 | 3910 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 01:18:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| whd-RC | 2888 | CG12891-RC | 1814..2595 | 800..19 | 3910 | 100 | Minus |
| whd-RA | 2882 | CG12891-RA | 1808..2589 | 800..19 | 3910 | 100 | Minus |
| whd-RD | 2907 | CG12891-RD | 1833..2614 | 800..19 | 3910 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 01:18:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10469945..10470305 | 138..498 | 1805 | 100 | Plus |
| 2R | 25286936 | 2R | 10470368..10470669 | 499..800 | 1510 | 100 | Plus |
| 2R | 25286936 | 2R | 10469766..10469886 | 19..139 | 605 | 100 | Plus |
Blast to na_te.dros performed 2015-02-05 01:18:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dtei\I-element | 5386 | Dtei\I-element DTEII 5386bp | 1051..1080 | 48..18 | 107 | 87.1 | Minus |
BO17046.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:01:54 Download gff for
BO17046.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12891-PA | 1559..2343 | 15..800 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:01:50 Download gff for
BO17046.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| whd-RD | 1833..2617 | 15..800 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:57:08 Download gff for
BO17046.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| whd-RD | 1833..2617 | 15..800 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 02:57:08 Download gff for
BO17046.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10469763..10469885 | 15..138 | 98 | <- | Plus |
| 2R | 10469946..10470305 | 139..498 | 100 | <- | Plus |
| 2R | 10470368..10470669 | 499..800 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:01:50 Download gff for
BO17046.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6357268..6357390 | 15..138 | 98 | <- | Plus |
| arm_2R | 6357451..6357810 | 139..498 | 100 | <- | Plus |
| arm_2R | 6357873..6358174 | 499..800 | 100 | | Plus |
BO17046.5prime Sequence
837 bp (787 high quality bases) assembled on 2006-10-13
> BO17046.5prime
GAAGTTATCAGTCGACATGGCCGAAGCCCATGCCGCCGTGGCATTCTCGT
TTGCCATCACCCATGAGGGCTTCGACATCAACTATGACCACGAGGTGCTC
AATTTGGTGTGGAACTCAGGAGTTCGTTCCTGGAAAAAGCGATTGGCTCG
CGCAAGGAACGGCGTACGCAATGGCGTCTATCCGGCTCACATCCAGAGCC
TCTGGTTGATCTCAGCAATAGCGCTGGGTCTACACTTTGCGGGCTACCAG
GCTCCATTCAATCTGACCAACCGTATACTGGTGCACCTGCCTTCCAACAC
GATAAACTGGCAGGTTACCGCCTGCTTTTTGGCCGCTCTGGTGGTCTGGC
TATCGATCTGTTTCACCATGAGATACACTCTCAAGCTGCTGCTCATGTAC
AAGGGCTGGATGTACGAGTCCAGAGCTCCCGGTAGTCGTGTCTCTCTGCC
CACCATGTTGTGGGTGGCAGTGGTGCGGGTTCTATCTAGTTGGAACAAAC
CGGGTCTGTACAGCTTCCAGGGTTCTCTGCCCAGGCTGCCACTGCCCTCC
GTTAAAGACACGATGACCAGGTACTTGCGCAGTGTTCGACCGCTGCTTGA
TGATGAGAACTACACGCGCATGGAGCGCCTGGCCAAAGAATTCGAACAGA
CCATCGGCAAGAAGCTGCAGTGGTACCTCATCCTCAAGAGCTGGTGGTCC
ACCAACTACGTGTCGGATTGGTGGGAGGAGTACGTCTACCTTCGTGGTCG
CAGTCCCCTCTGCGTGAACAGCAACTTCTACGGCACGGATGCGATCTTCA
TGAAACCTCACGACAAACAGGCGGCGCGTGCGGCCAA
BO17046.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:01:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12891-PB | 2343 | CPTI-RB | 1..821 | 17..837 | 4030 | 99.7 | Plus |
| CG12891-PA | 2343 | CPTI-RA | 1..821 | 17..837 | 4030 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:06:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| whd-RC | 2888 | CG12891-RC | 250..1070 | 17..837 | 4060 | 99.8 | Plus |
| whd-RA | 2882 | CG12891-RA | 250..1070 | 17..837 | 4060 | 99.8 | Plus |
| whd-RD | 2907 | CG12891-RD | 269..1089 | 17..837 | 4060 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:06:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10472533..10473213 | 837..157 | 3330 | 99.3 | Minus |
| 2R | 25286936 | 2R | 10473269..10473409 | 157..17 | 705 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:06:38 has no hits.
BO17046.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:01:54 Download gff for
BO17046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12891-PA | 1..819 | 17..835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 02:51:24 Download gff for
BO17046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| whd-RD | 264..1087 | 9..835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:39:59 Download gff for
BO17046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| whd-RD | 264..1087 | 9..835 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:39:59 Download gff for
BO17046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10473269..10473414 | 9..157 | 97 | | Minus |
| 2R | 10472535..10473212 | 158..835 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 02:51:24 Download gff for
BO17046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6360040..6360717 | 158..835 | 99 | <- | Minus |
| arm_2R | 6360774..6360919 | 9..157 | 97 | | Minus |
BO17046.pep Sequence
Translation from 16 to 2374
> BO17046.pep
MAEAHAAVAFSFAITHEGFDINYDHEVLNLVWNSGVRSWKKRLARARNGV
RNGVYPAHIQSLWLISAIALGLHFAGYQAPFNLTNRILVHLPSNTINWQV
TACFLAALVVWLSICFTMRYTLKLLLMYKGWMYESRAPGSRVSLPTMLWV
AVVRVLSSWNKPGLYSFQGSLPRLPLPSVKDTMTRYLRSVRPLLDDENYT
RMERLAKEFEQTIGKKLQWYLILKSWWSTNYVSDWWEEYVYLRGRSPLCV
NSNFYGTDAIFMNLTDKQAARAANVISLLLNFRRLIEHQELQPIMVQGMI
PLCSWQYERTFNTARVPGLETDRIIHYRDSNHIVVLHKGCYYKMLIYYKG
RILRPCELQVQIEEILKGKATPVEGEEHLAALTAWNRSKWAEARNTFFSW
GVNQTSLRTIESAAFVLSLDDEPFEFDLARPELLDNFGKKLLHGNGYNRW
FDKCFTVCVGTNGRVGFNAEHTWADAPVLGHLWEYIFGDDIYGYDETGNT
KGTPAFQPPTPTRLTWDLKPCLAQIEEATIDVTKLINEVNLRILVHQDYG
KGFMKKCRISPDAYIQMALQLAYYRDAGRFSLTYEASMTRLFREGRTETV
RPCTIESSAWVKAMQNPNTTNDERVKMMQAACDRHQLGYQDAMCGRGIDR
HLFCLYVVSKYLEVDSPFLNEVLSEPWRLSTSQTPHGQTPKMDLKKHPNC
ISAGGGFGPVADDGYGVSYIIAGENLIFFHISAKTTCQQTDVHRFAQNIS
QALSDIRSMFEQHMKDHPKPAKSLTNGKSTASFLDH
BO17046.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:16:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| whd-PA | 780 | CG12891-PA | 1..780 | 1..780 | 4194 | 100 | Plus |
| whd-PB | 780 | CG12891-PB | 1..780 | 1..780 | 4194 | 100 | Plus |
| whd-PC | 782 | CG12891-PC | 1..782 | 1..780 | 4120 | 98.2 | Plus |
| whd-PD | 782 | CG12891-PD | 1..782 | 1..780 | 4120 | 98.2 | Plus |
| CG1041-PE | 638 | CG1041-PE | 47..630 | 168..763 | 654 | 31.7 | Plus |
