Clone Sequence Records
BO17052.3prime Sequence
705 bp (636 high quality bases) assembled on 2006-10-13
> BO17052.3prime
ATGGTCTAGAAAGCTTGCGGTGTCGTTGTTGGGATTGTTGTTGTGTTCGT
GGCTTGTGGAGGACAAGGTGGAAGTCTCTTCACCAACAGCAGCAGATGCA
ATAGTTCTGGATGCGTTATTGTTGTTGGTGCCACCAATATCGCTGGCATT
GCATGATTCTGATTTACTGATTTCAATATTGTTACTGTTACTGTTGTTGT
TATTGTTGCTTAGCTTAATAGAAGACAAATTGGTTTTTAGCTGCACCTCA
TCGTATTTCTTGTCAGCCTCCTCAGCAAGGAAACGCGCTTCCTTCAGCTG
ATTCTCGAGAGCGTCCATGCGTTCTTCATCGGCAAGGGCGCGGTTCTCAA
GAATTTTGCGAGCACGTTCGCTCTCATCGGCGGCCTGAGAGGCTTCCGAC
AGCTTGGCTGTGGCGGAGCCCAGACGCTCCTCAGAGCGCTCCAAGTCTTC
TTCGAGCAACTGGATGCGACGGTTCAGAGCGGCAACCTCGGATTCGGCCC
GTTTGAGTTGTGTGTTCATGATGTTGTGCAGCTCGTTGCGGATGATGTTG
AACTTCATCATGGTGTCCGAACTGAAGATGGATCTGCCAAAGGCGAGTCC
CGGATAATCCGCACAACGTCCCTTGTTCCGTCGAGCCCTCCGCTCCGCCA
CAATCTCGGCCGCCTCGCTGGTGCATCGCAACTTGGGACATTCCGCCGCT
TGGTT
BO17052.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:02:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4898-PI | 1326 | Tm1-RI | 637..1323 | 705..19 | 3335 | 99.4 | Minus |
| CG4898-PC | 1326 | Tm1-RC | 637..1323 | 705..19 | 3335 | 99.4 | Minus |
| CG4898-PH | 2037 | Tm1-RH | 1348..2034 | 705..19 | 3335 | 99.4 | Minus |
| CG4898-PE | 2136 | Tm1-RE | 1312..1772 | 705..245 | 2205 | 99.1 | Minus |
| CG4898-PK | 1557 | Tm1-RK | 241..494 | 498..245 | 1270 | 100 | Minus |
| CG4898-PJ | 858 | Tm1-RJ | 241..494 | 498..245 | 1270 | 100 | Minus |
| CG4898-PD | 858 | Tm1-RD | 241..494 | 498..245 | 1270 | 100 | Minus |
| CG4898-PB | 1020 | Tm1-RB | 403..656 | 498..245 | 1270 | 100 | Minus |
| CG4898-PF | 1506 | Tm1-RF | 241..494 | 498..245 | 1270 | 100 | Minus |
| CG4898-PG | 858 | Tm1-RG | 241..494 | 498..245 | 1270 | 100 | Minus |
| CG4898-PL | 855 | Tm1-RL | 241..374 | 498..365 | 670 | 100 | Minus |
| CG4898-PA | 759 | Tm1-RA | 145..278 | 498..365 | 670 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:12:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tm1-RH | 3054 | CG4898-RH | 1625..2311 | 705..19 | 3375 | 99.4 | Minus |
| Tm1-RC | 2651 | CG4898-RC | 1222..1908 | 705..19 | 3375 | 99.4 | Minus |
| Tm1-RI | 2501 | CG4898-RI | 1072..1758 | 705..19 | 3375 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:11:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15296590..15296936 | 365..19 | 1735 | 100 | Minus |
| 3R | 32079331 | 3R | 15289233..15289440 | 705..498 | 980 | 98.1 | Minus |
| 3R | 32079331 | 3R | 15295112..15295246 | 499..365 | 675 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 15:11:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2375..2507 | 217..87 | 165 | 62.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2329..2523 | 210..19 | 158 | 58 | Minus |
| ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 2641..2671 | 207..177 | 110 | 83.9 | Minus |
| Dvir\Paris | 1730 | Dvir\Paris TV1 1730bp Derived from Z49253. | 482..542 | 227..167 | 107 | 63.9 | Minus |
BO17052.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:01:57 Download gff for
BO17052.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4898-PH | 1348..2037 | 16..705 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:20:40 Download gff for
BO17052.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tm1-RI | 1072..1764 | 12..705 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:21:22 Download gff for
BO17052.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tm1-RI | 1072..1764 | 12..705 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:21:22 Download gff for
BO17052.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15289233..15289439 | 499..705 | 98 | -> | Minus |
| 3R | 15295113..15295246 | 365..498 | 100 | -> | Minus |
| 3R | 15296591..15296942 | 12..364 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:20:40 Download gff for
BO17052.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11114955..11115161 | 499..705 | 98 | -> | Minus |
| arm_3R | 11120835..11120968 | 365..498 | 100 | -> | Minus |
| arm_3R | 11122313..11122664 | 12..364 | 98 | | Minus |
BO17052.5prime Sequence
683 bp (578 high quality bases) assembled on 2006-10-13
> BO17052.5prime
GAAGTTATCAGTCGACATGTACGAGAAAACATTAAACATAGGAACTGCGA
AAGTTAATAATGCATATGAATGGCAAAAAGTGAGATACAACAACAAACCC
CAACCGACAACAACAGCAGCAGCTGCAGTTAAACCTAAACCACAACAACA
ACAAGTTCAAAAACAGAAAAATGCAACAAAAGCCGCGCCAGCAACAACTA
CAGCTGCAACAACAACAGCAACAGTGCCACCGTTAGCCGGCAACAGCGTT
ACCGTTAAGCAAGGCCCCAAAATCAAATTTGTTGGCAACGCGGCGCGCCG
CCAATCGTTGGCCCATCAAATCAAGCGAGCACATCGGCATTTACTGACCA
GTGGCGGTCAGGATAAGCAGCCGCAGCAAAAGCAAAAAACACAAGTGCAG
CCGCAGTCGGGCAAAACAGTTGCCAAACCGAAACAGAGGCAGCAGAAACA
ATTGTTCAAAAGTGATAAGGCGAAGGAGAAGTCCAGCAGGCAGCAGAGAA
AGCGAGCCGGCACCAGGAGCACTCGCAATCCGAGGACGCAATCGGAATCT
TCGGGCCTGTCATCCCGTTGGTGTTCCATCGAAGAGCAGTTGAACCTGCT
GGACGACCTGCTCTACTACTGCGATGAGGAGGCCGAACTGTATCTAGCCC
AGCTGTACGAAAGGTTCGAGACACTCCGGCGTA
BO17052.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:02:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4898-PH | 2037 | Tm1-RH | 1..667 | 17..683 | 3335 | 100 | Plus |
| CG4898-PE | 2136 | Tm1-RE | 332..631 | 384..683 | 1500 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:07:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tm1-RH | 3054 | CG4898-RH | 278..944 | 17..683 | 3335 | 100 | Plus |
| Tm1-RC | 2651 | CG4898-RC | 242..541 | 384..683 | 1500 | 100 | Plus |
| Tm1-RI | 2501 | CG4898-RI | 92..391 | 384..683 | 1500 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:07:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15287455..15287821 | 17..383 | 1835 | 100 | Plus |
| 3R | 32079331 | 3R | 15288253..15288552 | 384..683 | 1500 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 18:07:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbuz\BuT6 | 387 | Dbuz\BuT6 BUT6 387bp | 156..195 | 406..367 | 119 | 77.5 | Minus |
| Dvir\Ulysses | 10653 | Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). | 6379..6449 | 466..538 | 108 | 63 | Plus |
BO17052.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:01:58 Download gff for
BO17052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4898-PH | 1..666 | 17..682 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 02:51:30 Download gff for
BO17052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tm1-RH | 278..943 | 17..682 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:40:09 Download gff for
BO17052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tm1-RH | 278..943 | 17..682 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:40:09 Download gff for
BO17052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15287455..15287821 | 17..383 | 100 | -> | Plus |
| 3R | 15288253..15288551 | 384..682 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 02:51:30 Download gff for
BO17052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11113177..11113543 | 17..383 | 100 | -> | Plus |
| arm_3R | 11113975..11114273 | 384..682 | 100 | | Plus |
BO17052.complete Sequence
2068 bp assembled on 2006-12-18
GenBank Submission: FJ634019
> BO17052.complete
GAAGTTATCAGTCGACATGTACGAGAAAACATTAAACATAGGAACTGCGA
AAGTTAATAATGCATATGAATGGCAAAAAGTGAGATACAACAACAAACCC
CAACCGACAACAACAGCAGCAGCTGCAGTTAAACCTAAACCACAACAACA
ACAAGTTCAAAAACAGAAAAATGCAACAAAAGCCGCGCCAGCAACAACTA
CAGCTGCAACAACAACAGCAACAGTGCCACCGTTAGCCGGCAACAGCGTT
ACCGTTAAGCAAGGCCCCAAAATCAAATTTGTTGGCAACGCGGCGCGCCG
CCAATCGTTGGCCCATCAAATCAAGCGAGCACATCGGCATTTACTGACCA
GTGGCGGTCAGGATAAGCAGCCGCAGCAAAAGCAAAAAACACAAGTGCAG
CCGCAGTCGGGCAAAACAGTTGCCAAACCGAAACAGAGGCAGCAGAAACA
ATTGTTCAAAAGTGATAAGGCGAAGGAGAAGTCCAGCAGGCAGCAGAGAA
AGCGAGCCGGCACCAGGAGCACTCGCAATCCGAGGACGCAATCGGAATCT
TCGGGCCTGTCATCCCGTTGGTGTTCCATCGAAGAGCAGTTGAACCTGCT
GGACGACCTGCTCTACTACTGCGATGAGGAGGCCGAACTGTATCTAGCCC
AGCTGTACGAAAGGTTCGAGACACTCCGGCGTAGCAGGAGTTCCTCGCCA
GTGAGCGATTTCTGGAGCGATTCCGACATGGAGCACGATGACTCCAGCAC
CAGTGGCACTGGCAGCCATACAGCCAGCAATACCAGTCTAGTTCCCGCCT
CGCTGAAGCGTCGTGGCCACCAGCATCATCCGCGATTCTCGGGCACTCGC
CGTCCCAATGTGCCCAATGTCCAGGAGATTCTGGCCGCACTCTATCGTGG
CGACTCAAAGAGCGCCCTGTCCAATCTGAGAGGAGAGACGCAACCGGAGG
AGGAGCAACCACAGCAGCAGACGGAGGAGGTGCTGCCACCCAGCAGAAGC
ACTTTAAGCCTGCCCCTCAGTGAATCGGTGACCAATTCCCTGGGCAGCAA
CAGTCCCACGCCCACAGACGAAAGCAGCGTGCAAGATGAGGGGGCCAGTA
ATCCGGCAGCAGCTTTAATAGCTGAGGATGCAGCCCCACCAGCAGGCACA
ACCACGTCCAAGAGCAAGAAAAAGAAGCGGGAGAAGGGTGAAAGGTCAGA
GAAATCGGACAAATCTGAGAAATCCGACCGGAAGAAGAAATCTTCAGGCA
AGAAGGAACGCAGCAAACGATCCAATCCCATGGAGCAAAGCAGCGACAGC
CTGGCCACCGATCTCAGTGCCGGGGCCATCGATGAGGGCATCGCACTGGC
CGACGACGATGACAACCAAGCGGCGGAATGGTCCAAGTTGCGATGCACCA
GCGAGGCGGCCGAGATTGTGGCGGAGCGGGAGGCTCGACGGAACAAGGGA
CGTTGTGCGGATTATCCGGGACTCGCCTTTGGCAGATCCATCTTCAGTTC
GGACACCATGATGAAGTTCAACATCATCCGCAACGAGCTGCACAACATCA
TGAACACACAACTCAAACGGGCCGAATCCGAGGTTGCCGCTCTGAACCGT
CGCATCCAGTTGCTCGAAGAAGACTTGGAGCGCTCTGAGGAGCGTCTGGG
CTCCGCCACAGCCAAGCTGTCGGAAGCCTCTCAGGCCGCCGATGAGAGCG
AACGTGCTCGCAAAATTCTTGAGAACCGCGCCCTTGCCGATGAAGAACGC
ATGGACGCTCTCGAGAATCAGCTGAAGGAAGCGCGTTTCCTTGCTGAGGA
GGCTGACAAGAAATACGATGAGGTGCAGCTAAAAACCAATTTGTCTTCTA
TTAAGCTAAGCAACAATAACAACAACAGTAACAGTAACAATATTGAAATC
AGTAAATCAGAATCATGCAATGCCAGCGATATTGGTGGCACCAACAACAA
TAACGCATCCAGAACTATTGCATCTGCTGCTGTTGGTGAAGAGACTTCCA
CCTTGTCCTCCACAAGCCACGAACACAACAACAATCCCAACAACGACACC
GCAAGCTTTCTAGACCAT
BO17052.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:52:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tm1-RH | 2037 | CG4898-PH | 1..2034 | 17..2050 | 10170 | 100 | Plus |
| Tm1-RE | 2136 | CG4898-PE | 332..1772 | 384..1824 | 7205 | 100 | Plus |
| Tm1-RC | 1326 | CG4898-PC | 1..1323 | 728..2050 | 6615 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:52:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tm1-RH | 3054 | CG4898-RH | 278..2311 | 17..2050 | 10170 | 100 | Plus |
| Tm1-RC | 2651 | CG4898-RC | 242..1908 | 384..2050 | 8335 | 100 | Plus |
| Tm1-RI | 2501 | CG4898-RI | 92..1758 | 384..2050 | 8335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:52:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15288253..15289440 | 384..1571 | 5940 | 100 | Plus |
| 3R | 32079331 | 3R | 15287455..15287821 | 17..383 | 1835 | 100 | Plus |
| 3R | 32079331 | 3R | 15296590..15296936 | 1704..2050 | 1735 | 100 | Plus |
| 3R | 32079331 | 3R | 15295112..15295246 | 1570..1704 | 675 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 23:52:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2375..2507 | 1852..1982 | 165 | 62.5 | Plus |
| Dbuz\BuT6 | 387 | Dbuz\BuT6 BUT6 387bp | 156..195 | 406..367 | 119 | 77.5 | Minus |
BO17052.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:05:31 Download gff for
BO17052.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tm1-RH | 1..2037 | 17..2053 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:24:52 Download gff for
BO17052.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tm1-RH | 278..2317 | 17..2057 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:40:31 Download gff for
BO17052.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tm1-RH | 278..2311 | 17..2052 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:05:32 Download gff for
BO17052.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tm1-RH | 278..2317 | 17..2057 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:10:09 Download gff for
BO17052.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tm1-RH | 278..2311 | 17..2052 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:10:09 Download gff for
BO17052.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15287455..15287821 | 17..383 | 100 | -> | Plus |
| 3R | 15288253..15289439 | 384..1570 | 100 | -> | Plus |
| 3R | 15295113..15295246 | 1571..1704 | 100 | -> | Plus |
| 3R | 15296591..15296936 | 1705..2052 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:40:31 Download gff for
BO17052.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11113177..11113543 | 17..383 | 100 | -> | Plus |
| arm_3R | 11113975..11115161 | 384..1570 | 100 | -> | Plus |
| arm_3R | 11120835..11120968 | 1571..1704 | 100 | -> | Plus |
| arm_3R | 11122313..11122658 | 1705..2052 | 99 | | Plus |
BO17052.pep Sequence
Translation from 16 to 2068
> BO17052.pep
MYEKTLNIGTAKVNNAYEWQKVRYNNKPQPTTTAAAAVKPKPQQQQVQKQ
KNATKAAPATTTAATTTATVPPLAGNSVTVKQGPKIKFVGNAARRQSLAH
QIKRAHRHLLTSGGQDKQPQQKQKTQVQPQSGKTVAKPKQRQQKQLFKSD
KAKEKSSRQQRKRAGTRSTRNPRTQSESSGLSSRWCSIEEQLNLLDDLLY
YCDEEAELYLAQLYERFETLRRSRSSSPVSDFWSDSDMEHDDSSTSGTGS
HTASNTSLVPASLKRRGHQHHPRFSGTRRPNVPNVQEILAALYRGDSKSA
LSNLRGETQPEEEQPQQQTEEVLPPSRSTLSLPLSESVTNSLGSNSPTPT
DESSVQDEGASNPAAALIAEDAAPPAGTTTSKSKKKKREKGERSEKSDKS
EKSDRKKKSSGKKERSKRSNPMEQSSDSLATDLSAGAIDEGIALADDDDN
QAAEWSKLRCTSEAAEIVAEREARRNKGRCADYPGLAFGRSIFSSDTMMK
FNIIRNELHNIMNTQLKRAESEVAALNRRIQLLEEDLERSEERLGSATAK
LSEASQAADESERARKILENRALADEERMDALENQLKEARFLAEEADKKY
DEVQLKTNLSSIKLSNNNNNSNSNNIEISKSESCNASDIGGTNNNNASRT
IASAAVGEETSTLSSTSHEHNNNPNNDTASFLDH
BO17052.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:28:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tm1-PH | 678 | CG4898-PH | 1..678 | 1..678 | 3421 | 100 | Plus |
| Tm1-PE | 711 | CG4898-PE | 36..620 | 37..632 | 2420 | 84.6 | Plus |
| Tm1-PC | 441 | CG4898-PC | 1..441 | 238..678 | 2205 | 100 | Plus |
| Tm1-PI | 441 | CG4898-PI | 1..441 | 238..678 | 2205 | 100 | Plus |
| Tm1-PO | 285 | CG4898-PO | 75..194 | 513..632 | 415 | 75.8 | Plus |
