Clone Sequence Records
BO17078.3prime Sequence
662 bp (661 high quality bases) assembled on 2006-10-13
> BO17078.3prime
ATGGTCTAGAAAGCTTGCGTTAACGCTAGCAAAACGCGGATACGCAATTA
CGGAACACTGAAAGTGGGACTTGTGGGTGGCAACGTTCCTCTTGATGCGC
CGCAGGGAGCAGTAGTAGGCCATCACGGCTCGCAGGCTCTTCCACTTCGT
TGTCTGCTGCTGGCCATTGGAGGCATTGGCAGTGGCGGCTGCGGATGCGG
ATGCCGAGGAGGTGGCGAAGGCGCCACTCCGGGACTGATCCTCCGCTGCC
ACAAGCTCCTCGGGATGCTCGCTGATGAACGACGAGAGGGTCTTCATCGC
TGGCAATGGCCTGGGACCCACCGGCGTGCTGGCGCTCTGGTCGGAGGACG
GACTGTTCACATGGAGGCGCACCTGGCGCCGCTGACGGGCCTGGTGCGGA
TGCGGATACGGATGCGGATGCGTATGCGGATGTTGATGCGGTTGTGCCGG
CGTCAGTATAAGTCTATCCCTCTCAGTATACCTTAAACTAGTGGTGGTGG
GGCAGCCGCAGTGGTGCAGTTGCCCACTGGTTAGCGACGAGCTGCCGGAT
CGCTGGCTGGGACTCTTGCTGTCCGATGAGTGCGCCGCACTGTTGTTGTC
GTCATCGCGGACCATCTTGTGGTGGTGCCGCTTGTGATAGCCACCGTCGC
TGTGTCCGCCAG
BO17078.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18210-PA | 960 | CG18210-RA | 314..957 | 662..19 | 3220 | 100 | Minus |
CG17762-PD | 4413 | tomosyn-RD | 2571..2597 | 421..395 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:46:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cngl-RF | 5515 | CG43395-RF | 2563..3206 | 662..19 | 3220 | 100 | Minus |
Cngl-RE | 11745 | CG43395-RE | 2563..2674 | 662..551 | 560 | 100 | Minus |
Cngl-RD | 11700 | CG43395-RD | 2563..2674 | 662..551 | 560 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:46:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15408042..15408574 | 19..551 | 2665 | 100 | Plus |
X | 23542271 | X | 15410832..15410943 | 551..662 | 560 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 06:46:05 has no hits.
BO17078.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:02:07 Download gff for
BO17078.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18210-PA | 314..960 | 15..662 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:31:29 Download gff for
BO17078.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cngl-RF | 2529..3177 | 12..662 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:39:18 Download gff for
BO17078.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cngl-RF | 2563..3211 | 12..662 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:39:18 Download gff for
BO17078.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15408032..15408573 | 13..550 | 98 | <- | Plus |
X | 15410832..15410943 | 551..662 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:31:29 Download gff for
BO17078.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15302065..15302606 | 13..550 | 98 | <- | Plus |
arm_X | 15304865..15304976 | 551..662 | 100 | | Plus |
BO17078.5prime Sequence
770 bp (694 high quality bases) assembled on 2006-10-13
> BO17078.5prime
GAAGTTATCAGTCGACATGAAACTGAGCGTGAGCGCGTATCGGGCGCATG
CATCCGCACACAAGAAGATCCTCTCCAGCGGCTATCACTCACAGCTCAAC
TACGGCAGCACTGGAGCGGCAGCGGCATCCTCCTCGTCGTCGGGGGCCAC
TGCAACGGGCCTATATACGATGGAAGCGCACGAGCACGAAGCGGGCAAGT
TTGTCAAGGATGTGGCCCGTCAGGTGCACGACTGCAACAGCGACACGGAT
GTCATCAGTCCCACGGGCACCAGTATCTCCGGTGGCGGAGGAGGCGGCGG
AGCAGGCGGTGCCGGCGGATCCGGTGGTGCTGGCGGACACAGCGACGGTG
GCTATCACAAGCGGCACCACCACAAGATGGTCCGCGATGACGACAACAAC
AGTGCGGCGCACTCATCGGACAGCAAGAGTCCCAGCCAGCGATCCGGCAG
CTCGTCGCTAACCAGTGGGCAACTGCACCACTGCGGCTGCCCCACCACCA
CTAGTTTAAGGTATACTGAGAGGGATAGACTTATACTGACGCCGGCACAA
CCGCATCAACATCCGCATACGCATCCGCATCCGTATCCGCATCCGCACCA
GGCCCGTCAGCGGCGCCAGGTGCGCCTCCATGTGAACAGTCCGTCCTCCG
ACCAGAGCGCCAGCACGCCGGTGGGTCCCAGGCCATTGCCAGCGATGAAG
ACCCTCTCGTCGTTCATCAGCGAGCATCCCGAGGAGCTTGTGGCAGCGGA
GGATCAGTCCCGGAGTGGCG
BO17078.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18210-PA | 960 | CG18210-RA | 1..754 | 17..770 | 3770 | 100 | Plus |
CG17762-PD | 4413 | tomosyn-RD | 2571..2597 | 571..597 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:31:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cngl-RF | 5515 | CG43395-RF | 2250..3003 | 17..770 | 3770 | 100 | Plus |
Cngl-RE | 11745 | CG43395-RE | 2250..2674 | 17..441 | 2125 | 100 | Plus |
Cngl-RD | 11700 | CG43395-RD | 2250..2674 | 17..441 | 2125 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:31:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15408245..15408574 | 770..441 | 1650 | 100 | Minus |
X | 23542271 | X | 15410832..15411104 | 441..169 | 1365 | 100 | Minus |
X | 23542271 | X | 15419963..15420115 | 169..17 | 765 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 10:31:12 has no hits.
BO17078.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:02:08 Download gff for
BO17078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18210-PA | 1..754 | 17..770 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:42:29 Download gff for
BO17078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cngl-RF | 2211..2969 | 8..770 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:27:02 Download gff for
BO17078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cngl-RF | 2245..3003 | 8..770 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:27:02 Download gff for
BO17078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15408245..15408573 | 442..770 | 100 | <- | Minus |
X | 15410832..15411103 | 170..441 | 100 | <- | Minus |
X | 15419963..15420120 | 8..169 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:42:29 Download gff for
BO17078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15302278..15302606 | 442..770 | 100 | <- | Minus |
arm_X | 15304865..15305136 | 170..441 | 100 | <- | Minus |
arm_X | 15313996..15314153 | 8..169 | 97 | | Minus |
BO17078.complete Sequence
991 bp assembled on 2006-10-11
GenBank Submission: FJ634020
> BO17078.complete
GAAGTTATCAGTCGACATGAAACTGAGCGTGAGCGCGTATCGGGCGCATG
CATCCGCACACAAGAAGATCCTCTCCAGCGGCTATCACTCACAGCTCAAC
TACGGCAGCACTGGAGCGGCAGCGGCATCCTCCTCGTCGTCGGGGGCCAC
TGCAACGGGCCTATATACGATGGAAGCGCACGAGCACGAAGCGGGCAAGT
TTGTCAAGGATGTGGCCCGTCAGGTGCACGACTGCAACAGCGACACGGAT
GTCATCAGTCCCACGGGCACCAGTATCTCCGGTGGCGGAGGAGGCGGCGG
AGCAGGCGGTGCCGGCGGATCCGGTGGTGCTGGCGGACACAGCGACGGTG
GCTATCACAAGCGGCACCACCACAAGATGGTCCGCGATGACGACAACAAC
AGTGCGGCGCACTCATCGGACAGCAAGAGTCCCAGCCAGCGATCCGGCAG
CTCGTCGCTAACCAGTGGGCAACTGCACCACTGCGGCTGCCCCACCACCA
CTAGTTTAAGGTATACTGAGAGGGATAGACTTATACTGACGCCGGCACAA
CCGCATCAACATCCGCATACGCATCCGCATCCGTATCCGCATCCGCACCA
GGCCCGTCAGCGGCGCCAGGTGCGCCTCCATGTGAACAGTCCGTCCTCCG
ACCAGAGCGCCAGCACGCCGGTGGGTCCCAGGCCATTGCCAGCGATGAAG
ACCCTCTCGTCGTTCATCAGCGAGCATCCCGAGGAGCTTGTGGCAGCGGA
GGATCAGTCCCGGAGTGGCGCCTTCGCCACCTCCTCGGCATCCGCATCCG
CAGCCGCCACTGCCAATGCCTCCAATGGCCAGCAGCAGACAACGAAGTGG
AAGAGCCTGCGAGCCGTGATGGCCTACTACTGCTCCCTGCGGCGCATCAA
GAGGAACGTTGCCACCCACAAGTCCCACTTTCAGTGTTCCGTAATTGCGT
ATCCGCGTTTTGCTAGCGTTAACGCAAGCTTTCTAGACCAT
BO17078.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:23:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cngl-RF | 960 | CG43395-PF | 1..957 | 17..973 | 4785 | 100 | Plus |
Cngl-RE | 5913 | CG43395-PE | 1..425 | 17..441 | 2125 | 100 | Plus |
Cngl-RD | 5868 | CG43395-PD | 1..425 | 17..441 | 2125 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:23:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cngl-RF | 5515 | CG43395-RF | 2250..3206 | 17..973 | 4785 | 100 | Plus |
Cngl-RE | 11745 | CG43395-RE | 2250..2674 | 17..441 | 2125 | 100 | Plus |
Cngl-RD | 11700 | CG43395-RD | 2250..2674 | 17..441 | 2125 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:23:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15408042..15408574 | 973..441 | 2665 | 100 | Minus |
X | 23542271 | X | 15410832..15411104 | 441..169 | 1365 | 100 | Minus |
X | 23542271 | X | 15419963..15420115 | 169..17 | 765 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:23:21 has no hits.
BO17078.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:25:19 Download gff for
BO17078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18210-RA | 1..960 | 17..977 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:51:02 Download gff for
BO17078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18210-RA | 1347..2303 | 17..975 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:16 Download gff for
BO17078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cngl-RF | 2216..3172 | 17..975 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:25:20 Download gff for
BO17078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18210-RA | 1342..2308 | 8..980 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:17:00 Download gff for
BO17078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cngl-RF | 2250..3206 | 17..975 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:17:00 Download gff for
BO17078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15410832..15411103 | 170..441 | 100 | <- | Minus |
X | 15408040..15408573 | 442..975 | 99 | <- | Minus |
X | 15419963..15420115 | 17..169 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:16 Download gff for
BO17078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15304865..15305136 | 170..441 | 100 | <- | Minus |
arm_X | 15313996..15314148 | 17..169 | 100 | | Minus |
arm_X | 15302073..15302606 | 442..975 | 99 | <- | Minus |
BO17078.pep Sequence
Translation from 16 to 991
> BO17078.pep
MKLSVSAYRAHASAHKKILSSGYHSQLNYGSTGAAAASSSSSGATATGLY
TMEAHEHEAGKFVKDVARQVHDCNSDTDVISPTGTSISGGGGGGGAGGAG
GSGGAGGHSDGGYHKRHHHKMVRDDDNNSAAHSSDSKSPSQRSGSSSLTS
GQLHHCGCPTTTSLRYTERDRLILTPAQPHQHPHTHPHPYPHPHQARQRR
QVRLHVNSPSSDQSASTPVGPRPLPAMKTLSSFISEHPEELVAAEDQSRS
GAFATSSASASAAATANASNGQQQTTKWKSLRAVMAYYCSLRRIKRNVAT
HKSHFQCSVIAYPRFASVNASFLDH
BO17078.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:01:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cngl-PF | 319 | CG43395-PF | 1..319 | 1..319 | 1682 | 100 | Plus |
Cngl-PD | 1955 | CG43395-PD | 1..146 | 1..146 | 751 | 97.9 | Plus |
Cngl-PI | 1942 | CG43395-PI | 1..142 | 1..142 | 747 | 100 | Plus |
Cngl-PE | 1970 | CG43395-PE | 1..142 | 1..142 | 747 | 100 | Plus |
Cngl-PJ | 1970 | CG43395-PJ | 1..142 | 1..142 | 747 | 100 | Plus |