Clone BO17078 Report

Search the DGRC for BO17078

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:170
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptCG18210-RA
Protein status:BO17078.pep: validated full length
Sequenced Size:991

Clone Sequence Records

BO17078.3prime Sequence

662 bp (661 high quality bases) assembled on 2006-10-13

> BO17078.3prime
ATGGTCTAGAAAGCTTGCGTTAACGCTAGCAAAACGCGGATACGCAATTA
CGGAACACTGAAAGTGGGACTTGTGGGTGGCAACGTTCCTCTTGATGCGC
CGCAGGGAGCAGTAGTAGGCCATCACGGCTCGCAGGCTCTTCCACTTCGT
TGTCTGCTGCTGGCCATTGGAGGCATTGGCAGTGGCGGCTGCGGATGCGG
ATGCCGAGGAGGTGGCGAAGGCGCCACTCCGGGACTGATCCTCCGCTGCC
ACAAGCTCCTCGGGATGCTCGCTGATGAACGACGAGAGGGTCTTCATCGC
TGGCAATGGCCTGGGACCCACCGGCGTGCTGGCGCTCTGGTCGGAGGACG
GACTGTTCACATGGAGGCGCACCTGGCGCCGCTGACGGGCCTGGTGCGGA
TGCGGATACGGATGCGGATGCGTATGCGGATGTTGATGCGGTTGTGCCGG
CGTCAGTATAAGTCTATCCCTCTCAGTATACCTTAAACTAGTGGTGGTGG
GGCAGCCGCAGTGGTGCAGTTGCCCACTGGTTAGCGACGAGCTGCCGGAT
CGCTGGCTGGGACTCTTGCTGTCCGATGAGTGCGCCGCACTGTTGTTGTC
GTCATCGCGGACCATCTTGTGGTGGTGCCGCTTGTGATAGCCACCGTCGC
TGTGTCCGCCAG

BO17078.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG18210-PA 960 CG18210-RA 314..957 662..19 3220 100 Minus
CG17762-PD 4413 tomosyn-RD 2571..2597 421..395 135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:46:08
Subject Length Description Subject Range Query Range Score Percent Strand
Cngl-RF 5515 CG43395-RF 2563..3206 662..19 3220 100 Minus
Cngl-RE 11745 CG43395-RE 2563..2674 662..551 560 100 Minus
Cngl-RD 11700 CG43395-RD 2563..2674 662..551 560 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:46:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15408042..15408574 19..551 2665 100 Plus
X 23542271 X 15410832..15410943 551..662 560 100 Plus
Blast to na_te.dros performed on 2015-02-03 06:46:05 has no hits.

BO17078.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:02:07 Download gff for BO17078.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18210-PA 314..960 15..662 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:31:29 Download gff for BO17078.3prime
Subject Subject Range Query Range Percent Splice Strand
cngl-RF 2529..3177 12..662 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:39:18 Download gff for BO17078.3prime
Subject Subject Range Query Range Percent Splice Strand
Cngl-RF 2563..3211 12..662 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:39:18 Download gff for BO17078.3prime
Subject Subject Range Query Range Percent Splice Strand
X 15408032..15408573 13..550 98 <- Plus
X 15410832..15410943 551..662 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:31:29 Download gff for BO17078.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15302065..15302606 13..550 98 <- Plus
arm_X 15304865..15304976 551..662 100   Plus

BO17078.5prime Sequence

770 bp (694 high quality bases) assembled on 2006-10-13

> BO17078.5prime
GAAGTTATCAGTCGACATGAAACTGAGCGTGAGCGCGTATCGGGCGCATG
CATCCGCACACAAGAAGATCCTCTCCAGCGGCTATCACTCACAGCTCAAC
TACGGCAGCACTGGAGCGGCAGCGGCATCCTCCTCGTCGTCGGGGGCCAC
TGCAACGGGCCTATATACGATGGAAGCGCACGAGCACGAAGCGGGCAAGT
TTGTCAAGGATGTGGCCCGTCAGGTGCACGACTGCAACAGCGACACGGAT
GTCATCAGTCCCACGGGCACCAGTATCTCCGGTGGCGGAGGAGGCGGCGG
AGCAGGCGGTGCCGGCGGATCCGGTGGTGCTGGCGGACACAGCGACGGTG
GCTATCACAAGCGGCACCACCACAAGATGGTCCGCGATGACGACAACAAC
AGTGCGGCGCACTCATCGGACAGCAAGAGTCCCAGCCAGCGATCCGGCAG
CTCGTCGCTAACCAGTGGGCAACTGCACCACTGCGGCTGCCCCACCACCA
CTAGTTTAAGGTATACTGAGAGGGATAGACTTATACTGACGCCGGCACAA
CCGCATCAACATCCGCATACGCATCCGCATCCGTATCCGCATCCGCACCA
GGCCCGTCAGCGGCGCCAGGTGCGCCTCCATGTGAACAGTCCGTCCTCCG
ACCAGAGCGCCAGCACGCCGGTGGGTCCCAGGCCATTGCCAGCGATGAAG
ACCCTCTCGTCGTTCATCAGCGAGCATCCCGAGGAGCTTGTGGCAGCGGA
GGATCAGTCCCGGAGTGGCG

BO17078.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG18210-PA 960 CG18210-RA 1..754 17..770 3770 100 Plus
CG17762-PD 4413 tomosyn-RD 2571..2597 571..597 135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:31:16
Subject Length Description Subject Range Query Range Score Percent Strand
Cngl-RF 5515 CG43395-RF 2250..3003 17..770 3770 100 Plus
Cngl-RE 11745 CG43395-RE 2250..2674 17..441 2125 100 Plus
Cngl-RD 11700 CG43395-RD 2250..2674 17..441 2125 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:31:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15408245..15408574 770..441 1650 100 Minus
X 23542271 X 15410832..15411104 441..169 1365 100 Minus
X 23542271 X 15419963..15420115 169..17 765 100 Minus
Blast to na_te.dros performed on 2015-02-06 10:31:12 has no hits.

BO17078.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:02:08 Download gff for BO17078.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18210-PA 1..754 17..770 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:42:29 Download gff for BO17078.5prime
Subject Subject Range Query Range Percent Splice Strand
cngl-RF 2211..2969 8..770 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:27:02 Download gff for BO17078.5prime
Subject Subject Range Query Range Percent Splice Strand
Cngl-RF 2245..3003 8..770 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:27:02 Download gff for BO17078.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15408245..15408573 442..770 100 <- Minus
X 15410832..15411103 170..441 100 <- Minus
X 15419963..15420120 8..169 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:42:29 Download gff for BO17078.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15302278..15302606 442..770 100 <- Minus
arm_X 15304865..15305136 170..441 100 <- Minus
arm_X 15313996..15314153 8..169 97   Minus

BO17078.complete Sequence

991 bp assembled on 2006-10-11

GenBank Submission: FJ634020

> BO17078.complete
GAAGTTATCAGTCGACATGAAACTGAGCGTGAGCGCGTATCGGGCGCATG
CATCCGCACACAAGAAGATCCTCTCCAGCGGCTATCACTCACAGCTCAAC
TACGGCAGCACTGGAGCGGCAGCGGCATCCTCCTCGTCGTCGGGGGCCAC
TGCAACGGGCCTATATACGATGGAAGCGCACGAGCACGAAGCGGGCAAGT
TTGTCAAGGATGTGGCCCGTCAGGTGCACGACTGCAACAGCGACACGGAT
GTCATCAGTCCCACGGGCACCAGTATCTCCGGTGGCGGAGGAGGCGGCGG
AGCAGGCGGTGCCGGCGGATCCGGTGGTGCTGGCGGACACAGCGACGGTG
GCTATCACAAGCGGCACCACCACAAGATGGTCCGCGATGACGACAACAAC
AGTGCGGCGCACTCATCGGACAGCAAGAGTCCCAGCCAGCGATCCGGCAG
CTCGTCGCTAACCAGTGGGCAACTGCACCACTGCGGCTGCCCCACCACCA
CTAGTTTAAGGTATACTGAGAGGGATAGACTTATACTGACGCCGGCACAA
CCGCATCAACATCCGCATACGCATCCGCATCCGTATCCGCATCCGCACCA
GGCCCGTCAGCGGCGCCAGGTGCGCCTCCATGTGAACAGTCCGTCCTCCG
ACCAGAGCGCCAGCACGCCGGTGGGTCCCAGGCCATTGCCAGCGATGAAG
ACCCTCTCGTCGTTCATCAGCGAGCATCCCGAGGAGCTTGTGGCAGCGGA
GGATCAGTCCCGGAGTGGCGCCTTCGCCACCTCCTCGGCATCCGCATCCG
CAGCCGCCACTGCCAATGCCTCCAATGGCCAGCAGCAGACAACGAAGTGG
AAGAGCCTGCGAGCCGTGATGGCCTACTACTGCTCCCTGCGGCGCATCAA
GAGGAACGTTGCCACCCACAAGTCCCACTTTCAGTGTTCCGTAATTGCGT
ATCCGCGTTTTGCTAGCGTTAACGCAAGCTTTCTAGACCAT

BO17078.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:23:23
Subject Length Description Subject Range Query Range Score Percent Strand
Cngl-RF 960 CG43395-PF 1..957 17..973 4785 100 Plus
Cngl-RE 5913 CG43395-PE 1..425 17..441 2125 100 Plus
Cngl-RD 5868 CG43395-PD 1..425 17..441 2125 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:23:24
Subject Length Description Subject Range Query Range Score Percent Strand
Cngl-RF 5515 CG43395-RF 2250..3206 17..973 4785 100 Plus
Cngl-RE 11745 CG43395-RE 2250..2674 17..441 2125 100 Plus
Cngl-RD 11700 CG43395-RD 2250..2674 17..441 2125 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:23:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15408042..15408574 973..441 2665 100 Minus
X 23542271 X 15410832..15411104 441..169 1365 100 Minus
X 23542271 X 15419963..15420115 169..17 765 100 Minus
Blast to na_te.dros performed on 2014-11-28 08:23:21 has no hits.

BO17078.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:25:19 Download gff for BO17078.complete
Subject Subject Range Query Range Percent Splice Strand
CG18210-RA 1..960 17..977 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:51:02 Download gff for BO17078.complete
Subject Subject Range Query Range Percent Splice Strand
CG18210-RA 1347..2303 17..975 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:16 Download gff for BO17078.complete
Subject Subject Range Query Range Percent Splice Strand
cngl-RF 2216..3172 17..975 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:25:20 Download gff for BO17078.complete
Subject Subject Range Query Range Percent Splice Strand
CG18210-RA 1342..2308 8..980 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:17:00 Download gff for BO17078.complete
Subject Subject Range Query Range Percent Splice Strand
Cngl-RF 2250..3206 17..975 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:17:00 Download gff for BO17078.complete
Subject Subject Range Query Range Percent Splice Strand
X 15410832..15411103 170..441 100 <- Minus
X 15408040..15408573 442..975 99 <- Minus
X 15419963..15420115 17..169 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:16 Download gff for BO17078.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15304865..15305136 170..441 100 <- Minus
arm_X 15313996..15314148 17..169 100   Minus
arm_X 15302073..15302606 442..975 99 <- Minus

BO17078.pep Sequence

Translation from 16 to 991

> BO17078.pep
MKLSVSAYRAHASAHKKILSSGYHSQLNYGSTGAAAASSSSSGATATGLY
TMEAHEHEAGKFVKDVARQVHDCNSDTDVISPTGTSISGGGGGGGAGGAG
GSGGAGGHSDGGYHKRHHHKMVRDDDNNSAAHSSDSKSPSQRSGSSSLTS
GQLHHCGCPTTTSLRYTERDRLILTPAQPHQHPHTHPHPYPHPHQARQRR
QVRLHVNSPSSDQSASTPVGPRPLPAMKTLSSFISEHPEELVAAEDQSRS
GAFATSSASASAAATANASNGQQQTTKWKSLRAVMAYYCSLRRIKRNVAT
HKSHFQCSVIAYPRFASVNASFLDH

BO17078.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:01:20
Subject Length Description Subject Range Query Range Score Percent Strand
Cngl-PF 319 CG43395-PF 1..319 1..319 1682 100 Plus
Cngl-PD 1955 CG43395-PD 1..146 1..146 751 97.9 Plus
Cngl-PI 1942 CG43395-PI 1..142 1..142 747 100 Plus
Cngl-PE 1970 CG43395-PE 1..142 1..142 747 100 Plus
Cngl-PJ 1970 CG43395-PJ 1..142 1..142 747 100 Plus