Clone Sequence Records
BO17086.3prime Sequence
648 bp (581 high quality bases) assembled on 2006-10-13
> BO17086.3prime
ATGGTCTAGAAAGCTTGCCCTTATGTCCGCCTCGTAGGGCTGCCTACACG
CTGCCGCCACCCTGCGTGATTGTGGCTTCAGATAATGCCGTGGATCCTGC
TGTTGCGTACCTTTCCAGTGCCAGCGCCAACACCATCGCCATTGCCACCT
CAGAACGCTGGCGAGGAAGTGCCGCATGTCGCAGGCGATTGGCGCACATC
CTGGCGATCCAGGACGCTCCCCCGTCGCCCGCCGGGTGGAACGGAGCGGT
GGGGGCGTGGCCAGAGCGGCGCCCAGCAGCGCAGCGATCCACCTGCAAGC
GCCCAGCTGCAGAAGCACACAAACAGGTACACAAACAGACAGCGAGTGGG
CGAGGGGCGAGGATGCACTGGTGCCGCGTGCTGCATTGCTGCTGGGAACT
CCCCTGGAAACGGAATGGGAAACACCATTGAGCACATGTACTGTAACGCT
TTTGGGCTTTGCATTTGATGGATTACACTGATAATGCCCGGAGTCCGATG
GACGCGCCGATTTAATTAGGAGGAACGATGTGGTCGTATCGCCCTTATTG
GTGACCACGGATACGCCTCCGCGCGGCGAATCATAGTTGATGATCTGCGG
GTGAGAGGGAAAAGCATTATTATGATTCCAGAAGATATAGGCTGGCGG
BO17086.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:03:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33485-PA | 1809 | dpr9-RA | 1177..1806 | 648..19 | 3150 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:31:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr9-RB | 4826 | CG33485-RB | 1940..2569 | 648..19 | 3150 | 100 | Minus |
dpr9-RA | 3272 | CG33485-RA | 1940..2569 | 648..19 | 3150 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:31:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15057187..15057594 | 19..426 | 2040 | 100 | Plus |
3R | 32079331 | 3R | 15061457..15061645 | 424..612 | 945 | 100 | Plus |
3R | 32079331 | 3R | 15062351..15062386 | 613..648 | 180 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 03:31:39 has no hits.
BO17086.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:02:10 Download gff for
BO17086.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33485-PA | 1177..1809 | 16..648 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:00:45 Download gff for
BO17086.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr9-RA | 1939..2574 | 12..648 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:53:03 Download gff for
BO17086.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr9-RA | 1940..2575 | 12..648 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:53:03 Download gff for
BO17086.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15057181..15057593 | 12..425 | 99 | <- | Plus |
3R | 15061459..15061645 | 426..612 | 100 | <- | Plus |
3R | 15062351..15062386 | 613..648 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:00:45 Download gff for
BO17086.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10882903..10883315 | 12..425 | 99 | <- | Plus |
arm_3R | 10887181..10887367 | 426..612 | 100 | <- | Plus |
arm_3R | 10888073..10888108 | 613..648 | 100 | | Plus |
BO17086.5prime Sequence
507 bp (383 high quality bases) assembled on 2006-10-13
> BO17086.5prime
GAAGTTATCAGTCGACATGGCAACTTTTCAAATGGAAATGCGCCAGCAGC
AGCATCAACGAACGAATTTAAGGCAACGAGCGGCGGCAGTGGCAACATCC
AAAGCCAGGCGACAACGACAACATCATCTGCAGCCGGAGTCCACTGACTC
ACCGCCATACAGCACGGATTGCATAAGACTGTGGCCAGGATGTGGCCCAA
CCACCGCTGACAGGGTCAACGGCAACCCACCCACCTGCAACAACACCAGC
AGCAGCGACATAGGCGGCAACATCAGCGGCAACACGAGCAACCGCATCAG
CTGTTGCAGCTGCAACTTCGGACGGCAAAGAGCGCTGATTATGCTCAGCA
TGCTCGTCGTTGTCATGGCTCTGATGTCCGGCAATGGAGTTTATGCCGCT
CAGCGCGACTCCTACAACTCAAAGGATATGAGTAGCAGTAACAATGCCCT
GCCCAACGAAAGAGTGGGAGGATCCGCAGCTGGAGCGGGGCGAGCGGCTG
CTCCCGG
BO17086.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:03:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33485-PA | 1809 | dpr9-RA | 1..491 | 17..507 | 2330 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:50:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr9-RB | 4826 | CG33485-RB | 764..1254 | 17..507 | 2380 | 99.2 | Plus |
dpr9-RA | 3272 | CG33485-RA | 764..1254 | 17..507 | 2380 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:50:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15071452..15071824 | 389..17 | 1865 | 100 | Minus |
3R | 32079331 | 3R | 15066966..15067085 | 507..388 | 510 | 95 | Minus |
Blast to na_te.dros performed 2015-02-11 16:50:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2409..2673 | 44..310 | 198 | 59.3 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3269..3378 | 20..126 | 164 | 63.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2784..3030 | 78..316 | 152 | 57.7 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1059..1127 | 245..316 | 137 | 68.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1527..1587 | 217..277 | 134 | 68.9 | Plus |
TART-A | 13424 | TART-A 13424bp | 8939..8982 | 232..275 | 130 | 77.3 | Plus |
BS | 5142 | BS BS 5142bp | 2045..2121 | 223..299 | 124 | 62.3 | Plus |
BO17086.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:02:11 Download gff for
BO17086.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33485-PA | 1..491 | 17..507 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:12:12 Download gff for
BO17086.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr9-RA | 763..1253 | 17..507 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:55:24 Download gff for
BO17086.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr9-RA | 764..1254 | 17..507 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:55:24 Download gff for
BO17086.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15066966..15067083 | 390..507 | 96 | <- | Minus |
3R | 15071452..15071824 | 17..389 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:12:12 Download gff for
BO17086.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10892688..10892805 | 390..507 | 96 | <- | Minus |
arm_3R | 10897174..10897546 | 17..389 | 100 | | Minus |
BO17086.complete Sequence
1840 bp assembled on 2006-12-18
GenBank Submission: FJ634021
> BO17086.complete
GAAGTTATCAGTCGACATGGCAACTTTTCAAATGGAAATGCGCCAGCAGC
AGCATCAACGAACGAATTTAAGGCAACGAGCGGCGGCAGTGGCAACATCC
AAAGCCAGGCGACAACGACAACATCATCTGCAGCCGGAGTCCACTGACTC
ACCGCCATACAGCACGGATTGCATAAGACTGTGGCCAGGATGTGGCCCAA
CCACCGCTGACAGGGTCAACGGCAACCCACCCACCTGCAACAACACCAGC
AGCAGCGACATAGGCGGCAACATCAGCGGCAACACGAGCAACCGCATCAG
CTGTTGCAGCTGCAACTTCGGACGGCAAAGAGCGCTGATTATGCTCAGCA
TGCTCGTCGTTGTCATGGCTCTGATGTCCGGCAATGGAGTTTATGCCGCT
CAGCGCGACTCCTACAACTCAAAGGATATGAGTAGCAGTAACAATGCCCT
GCCCAACGAAGGAGTGGGAGGATCGGCAGCTGGAGCGGGCGAGGCGGCTG
CTCCCGGTCCCACTGGTATCGACGGAAGCGGAAGCGGCAACAATAGCAGC
GGAAATAACAAAAACGGCCATCCCGCTGCCGGATCAGGCGCTGCCTCCGA
ATCCGCTGCGCTGACTACCGATGCCAGTCGCAGCTCCGTTGGCGGCGCAA
CCACCATCACGGGAATCCCGAGCAGCAGCCTACACAAGGCCAGCAGCGCC
AGCAGCAACACATTCTCCTCCCAGCTTGCATCCGGCTTCCATCGCAACAG
CATCGATCTGGAGGAGGCCCGCAATGCGGGTCCCTATTTCGACAAGGCCT
TCTCCAAGAACGTCACCGCCCTGCTGGGCAAGACGGCCTATTTGAACTGC
CGAGTCAAGAATCTGGGCAATAAGACGATGTTGCTTCAGGTGTCGTGGGT
GCGACATCGGGACATACATTTGCTGACAGTTGGCCGATACACATACACGT
CGGATCAGCGCTTTCGGGCCATTCATCAGCCGCAAACTGAAGACTGGATG
CTGCAAATCAAGTACCCGCAACATCGAGATTCCGGCATCTACGAGTGCCA
GGTATCGACTACACCCCACATGAGTCACTACATTCACCTGAATGTCGTTG
AACCCTCGACGGAAATCATCGGTGCACCCGATCTGTATATAGAAAGTGGT
TCCACTATAAACCTTACCTGTATCATACAAAACTCACCGGAGCCGCCAGC
CTATATCTTCTGGAATCATAATAATGCTTTTCCCTCTCACCCGCAGATCA
TCAACTATGATTCGCCGCGCGGAGGCGTATCCGTGGTCACCAATAAGGGC
GATACGACCACATCGTTCCTCCTAATTAAATCGGCGCGTCCATCGGACTC
CGGGCATTATCAGTGTAATCCATCAAATGCAAAGCCCAAAAGCGTTACAG
TACATGTGCTCAATGGTGTTTCCCATTCCGTTTCCAGGGGAGTTCCCAGC
AGCAATGCAGCACGCGGCACCAGTGCATCCTCGCCCCTCGCCCACTCGCT
GTCTGTTTGTGTACCTGTTTGTGTGCTTCTGCAGCTGGGCGCTTGCAGGT
GGATCGCTGCGCTGCTGGGCGCCGCTCTGGCCACGCCCCCACCGCTCCGT
TCCACCCGGCGGGCGACGGGGGAGCGTCCTGGATCGCCAGGATGTGCGCC
AATCGCCTGCGACATGCGGCACTTCCTCGCCAGCGTTCTGAGGTGGCAAT
GGCGATGGTGTTGGCGCTGGCACTGGAAAGGTACGCAACAGCAGGATCCA
CGGCATTATCTGAAGCCACAATCACGCAGGGTGGCGGCAGCGTGTAGGCA
GCCCTACGAGGCGGACATAAGGGCAAGCTTTCTAGACCAT
BO17086.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:38:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr9-RB | 1809 | CG33485-PB | 1..1806 | 17..1822 | 9030 | 100 | Plus |
dpr9-RA | 1809 | CG33485-PA | 1..1806 | 17..1822 | 9030 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:38:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr9-RB | 4826 | CG33485-RB | 764..2569 | 17..1822 | 9030 | 100 | Plus |
dpr9-RA | 3272 | CG33485-RA | 764..2569 | 17..1822 | 9030 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:38:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15066596..15067085 | 877..388 | 2450 | 100 | Minus |
3R | 32079331 | 3R | 15057187..15057594 | 1822..1415 | 2040 | 100 | Minus |
3R | 32079331 | 3R | 15071452..15071824 | 389..17 | 1865 | 100 | Minus |
3R | 32079331 | 3R | 15063120..15063343 | 1100..877 | 1120 | 100 | Minus |
3R | 32079331 | 3R | 15061457..15061645 | 1417..1229 | 945 | 100 | Minus |
3R | 32079331 | 3R | 15062351..15062479 | 1228..1100 | 645 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 00:38:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3269..3378 | 20..126 | 164 | 63.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1527..1587 | 217..277 | 134 | 68.9 | Plus |
TART-A | 13424 | TART-A 13424bp | 8939..8982 | 232..275 | 130 | 77.3 | Plus |
BS | 5142 | BS BS 5142bp | 2045..2121 | 223..299 | 124 | 62.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2368 | 647..710 | 119 | 67.2 | Plus |
BO17086.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:05:32 Download gff for
BO17086.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr9-RA | 1..1809 | 17..1825 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:55:30 Download gff for
BO17086.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr9-RA | 763..2568 | 17..1824 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:28:41 Download gff for
BO17086.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr9-RA | 763..2568 | 17..1824 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:05:33 Download gff for
BO17086.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr9-RA | 763..2574 | 17..1829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:35:30 Download gff for
BO17086.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr9-RA | 764..2569 | 17..1824 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:35:30 Download gff for
BO17086.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15057184..15057593 | 1416..1824 | 99 | <- | Minus |
3R | 15061459..15061645 | 1229..1415 | 100 | <- | Minus |
3R | 15062351..15062478 | 1101..1228 | 100 | <- | Minus |
3R | 15063120..15063342 | 878..1100 | 100 | <- | Minus |
3R | 15066596..15067083 | 390..877 | 100 | <- | Minus |
3R | 15071452..15071824 | 17..389 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:28:41 Download gff for
BO17086.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10887181..10887367 | 1229..1415 | 100 | <- | Minus |
arm_3R | 10882906..10883315 | 1416..1824 | 99 | <- | Minus |
arm_3R | 10888073..10888200 | 1101..1228 | 100 | <- | Minus |
arm_3R | 10888842..10889064 | 878..1100 | 100 | <- | Minus |
arm_3R | 10892318..10892805 | 390..877 | 100 | <- | Minus |
arm_3R | 10897174..10897546 | 17..389 | 100 | | Minus |
BO17086.pep Sequence
Translation from 16 to 1840
> BO17086.pep
MATFQMEMRQQQHQRTNLRQRAAAVATSKARRQRQHHLQPESTDSPPYST
DCIRLWPGCGPTTADRVNGNPPTCNNTSSSDIGGNISGNTSNRISCCSCN
FGRQRALIMLSMLVVVMALMSGNGVYAAQRDSYNSKDMSSSNNALPNEGV
GGSAAGAGEAAAPGPTGIDGSGSGNNSSGNNKNGHPAAGSGAASESAALT
TDASRSSVGGATTITGIPSSSLHKASSASSNTFSSQLASGFHRNSIDLEE
ARNAGPYFDKAFSKNVTALLGKTAYLNCRVKNLGNKTMLLQVSWVRHRDI
HLLTVGRYTYTSDQRFRAIHQPQTEDWMLQIKYPQHRDSGIYECQVSTTP
HMSHYIHLNVVEPSTEIIGAPDLYIESGSTINLTCIIQNSPEPPAYIFWN
HNNAFPSHPQIINYDSPRGGVSVVTNKGDTTTSFLLIKSARPSDSGHYQC
NPSNAKPKSVTVHVLNGVSHSVSRGVPSSNAARGTSASSPLAHSLSVCVP
VCVLLQLGACRWIAALLGAALATPPPLRSTRRATGERPGSPGCAPIACDM
RHFLASVLRWQWRWCWRWHWKGTQQQDPRHYLKPQSRRVAAACRQPYEAD
IRASFLDH
BO17086.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:28:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr9-PB | 602 | CG33485-PB | 1..602 | 1..602 | 3209 | 100 | Plus |
dpr9-PA | 602 | CG33485-PA | 1..602 | 1..602 | 3209 | 100 | Plus |
dpr8-PB | 344 | CG32600-PB | 33..303 | 247..534 | 736 | 51.4 | Plus |
dpr6-PE | 283 | CG14162-PE | 73..274 | 256..467 | 732 | 64.2 | Plus |
dpr6-PA | 283 | CG14162-PA | 73..274 | 256..467 | 732 | 64.2 | Plus |