Clone BO17086 Report

Search the DGRC for BO17086

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:170
Well:86
Vector:pDNR-Dual
Associated Gene/Transcriptdpr9-RA
Protein status:BO17086.pep: validated full length
Sequenced Size:1840

Clone Sequence Records

BO17086.3prime Sequence

648 bp (581 high quality bases) assembled on 2006-10-13

> BO17086.3prime
ATGGTCTAGAAAGCTTGCCCTTATGTCCGCCTCGTAGGGCTGCCTACACG
CTGCCGCCACCCTGCGTGATTGTGGCTTCAGATAATGCCGTGGATCCTGC
TGTTGCGTACCTTTCCAGTGCCAGCGCCAACACCATCGCCATTGCCACCT
CAGAACGCTGGCGAGGAAGTGCCGCATGTCGCAGGCGATTGGCGCACATC
CTGGCGATCCAGGACGCTCCCCCGTCGCCCGCCGGGTGGAACGGAGCGGT
GGGGGCGTGGCCAGAGCGGCGCCCAGCAGCGCAGCGATCCACCTGCAAGC
GCCCAGCTGCAGAAGCACACAAACAGGTACACAAACAGACAGCGAGTGGG
CGAGGGGCGAGGATGCACTGGTGCCGCGTGCTGCATTGCTGCTGGGAACT
CCCCTGGAAACGGAATGGGAAACACCATTGAGCACATGTACTGTAACGCT
TTTGGGCTTTGCATTTGATGGATTACACTGATAATGCCCGGAGTCCGATG
GACGCGCCGATTTAATTAGGAGGAACGATGTGGTCGTATCGCCCTTATTG
GTGACCACGGATACGCCTCCGCGCGGCGAATCATAGTTGATGATCTGCGG
GTGAGAGGGAAAAGCATTATTATGATTCCAGAAGATATAGGCTGGCGG

BO17086.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:03:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG33485-PA 1809 dpr9-RA 1177..1806 648..19 3150 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:31:41
Subject Length Description Subject Range Query Range Score Percent Strand
dpr9-RB 4826 CG33485-RB 1940..2569 648..19 3150 100 Minus
dpr9-RA 3272 CG33485-RA 1940..2569 648..19 3150 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:31:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15057187..15057594 19..426 2040 100 Plus
3R 32079331 3R 15061457..15061645 424..612 945 100 Plus
3R 32079331 3R 15062351..15062386 613..648 180 100 Plus
Blast to na_te.dros performed on 2015-02-11 03:31:39 has no hits.

BO17086.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:02:10 Download gff for BO17086.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33485-PA 1177..1809 16..648 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:00:45 Download gff for BO17086.3prime
Subject Subject Range Query Range Percent Splice Strand
dpr9-RA 1939..2574 12..648 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:53:03 Download gff for BO17086.3prime
Subject Subject Range Query Range Percent Splice Strand
dpr9-RA 1940..2575 12..648 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:53:03 Download gff for BO17086.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 15057181..15057593 12..425 99 <- Plus
3R 15061459..15061645 426..612 100 <- Plus
3R 15062351..15062386 613..648 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:00:45 Download gff for BO17086.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10882903..10883315 12..425 99 <- Plus
arm_3R 10887181..10887367 426..612 100 <- Plus
arm_3R 10888073..10888108 613..648 100   Plus

BO17086.5prime Sequence

507 bp (383 high quality bases) assembled on 2006-10-13

> BO17086.5prime
GAAGTTATCAGTCGACATGGCAACTTTTCAAATGGAAATGCGCCAGCAGC
AGCATCAACGAACGAATTTAAGGCAACGAGCGGCGGCAGTGGCAACATCC
AAAGCCAGGCGACAACGACAACATCATCTGCAGCCGGAGTCCACTGACTC
ACCGCCATACAGCACGGATTGCATAAGACTGTGGCCAGGATGTGGCCCAA
CCACCGCTGACAGGGTCAACGGCAACCCACCCACCTGCAACAACACCAGC
AGCAGCGACATAGGCGGCAACATCAGCGGCAACACGAGCAACCGCATCAG
CTGTTGCAGCTGCAACTTCGGACGGCAAAGAGCGCTGATTATGCTCAGCA
TGCTCGTCGTTGTCATGGCTCTGATGTCCGGCAATGGAGTTTATGCCGCT
CAGCGCGACTCCTACAACTCAAAGGATATGAGTAGCAGTAACAATGCCCT
GCCCAACGAAAGAGTGGGAGGATCCGCAGCTGGAGCGGGGCGAGCGGCTG
CTCCCGG

BO17086.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:03:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG33485-PA 1809 dpr9-RA 1..491 17..507 2330 99.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:50:49
Subject Length Description Subject Range Query Range Score Percent Strand
dpr9-RB 4826 CG33485-RB 764..1254 17..507 2380 99.2 Plus
dpr9-RA 3272 CG33485-RA 764..1254 17..507 2380 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:50:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15071452..15071824 389..17 1865 100 Minus
3R 32079331 3R 15066966..15067085 507..388 510 95 Minus
Blast to na_te.dros performed 2015-02-11 16:50:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2409..2673 44..310 198 59.3 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3269..3378 20..126 164 63.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2784..3030 78..316 152 57.7 Plus
roo 9092 roo DM_ROO 9092bp 1059..1127 245..316 137 68.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1527..1587 217..277 134 68.9 Plus
TART-A 13424 TART-A 13424bp 8939..8982 232..275 130 77.3 Plus
BS 5142 BS BS 5142bp 2045..2121 223..299 124 62.3 Plus

BO17086.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:02:11 Download gff for BO17086.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33485-PA 1..491 17..507 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:12:12 Download gff for BO17086.5prime
Subject Subject Range Query Range Percent Splice Strand
dpr9-RA 763..1253 17..507 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:55:24 Download gff for BO17086.5prime
Subject Subject Range Query Range Percent Splice Strand
dpr9-RA 764..1254 17..507 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:55:24 Download gff for BO17086.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15066966..15067083 390..507 96 <- Minus
3R 15071452..15071824 17..389 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:12:12 Download gff for BO17086.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10892688..10892805 390..507 96 <- Minus
arm_3R 10897174..10897546 17..389 100   Minus

BO17086.complete Sequence

1840 bp assembled on 2006-12-18

GenBank Submission: FJ634021

> BO17086.complete
GAAGTTATCAGTCGACATGGCAACTTTTCAAATGGAAATGCGCCAGCAGC
AGCATCAACGAACGAATTTAAGGCAACGAGCGGCGGCAGTGGCAACATCC
AAAGCCAGGCGACAACGACAACATCATCTGCAGCCGGAGTCCACTGACTC
ACCGCCATACAGCACGGATTGCATAAGACTGTGGCCAGGATGTGGCCCAA
CCACCGCTGACAGGGTCAACGGCAACCCACCCACCTGCAACAACACCAGC
AGCAGCGACATAGGCGGCAACATCAGCGGCAACACGAGCAACCGCATCAG
CTGTTGCAGCTGCAACTTCGGACGGCAAAGAGCGCTGATTATGCTCAGCA
TGCTCGTCGTTGTCATGGCTCTGATGTCCGGCAATGGAGTTTATGCCGCT
CAGCGCGACTCCTACAACTCAAAGGATATGAGTAGCAGTAACAATGCCCT
GCCCAACGAAGGAGTGGGAGGATCGGCAGCTGGAGCGGGCGAGGCGGCTG
CTCCCGGTCCCACTGGTATCGACGGAAGCGGAAGCGGCAACAATAGCAGC
GGAAATAACAAAAACGGCCATCCCGCTGCCGGATCAGGCGCTGCCTCCGA
ATCCGCTGCGCTGACTACCGATGCCAGTCGCAGCTCCGTTGGCGGCGCAA
CCACCATCACGGGAATCCCGAGCAGCAGCCTACACAAGGCCAGCAGCGCC
AGCAGCAACACATTCTCCTCCCAGCTTGCATCCGGCTTCCATCGCAACAG
CATCGATCTGGAGGAGGCCCGCAATGCGGGTCCCTATTTCGACAAGGCCT
TCTCCAAGAACGTCACCGCCCTGCTGGGCAAGACGGCCTATTTGAACTGC
CGAGTCAAGAATCTGGGCAATAAGACGATGTTGCTTCAGGTGTCGTGGGT
GCGACATCGGGACATACATTTGCTGACAGTTGGCCGATACACATACACGT
CGGATCAGCGCTTTCGGGCCATTCATCAGCCGCAAACTGAAGACTGGATG
CTGCAAATCAAGTACCCGCAACATCGAGATTCCGGCATCTACGAGTGCCA
GGTATCGACTACACCCCACATGAGTCACTACATTCACCTGAATGTCGTTG
AACCCTCGACGGAAATCATCGGTGCACCCGATCTGTATATAGAAAGTGGT
TCCACTATAAACCTTACCTGTATCATACAAAACTCACCGGAGCCGCCAGC
CTATATCTTCTGGAATCATAATAATGCTTTTCCCTCTCACCCGCAGATCA
TCAACTATGATTCGCCGCGCGGAGGCGTATCCGTGGTCACCAATAAGGGC
GATACGACCACATCGTTCCTCCTAATTAAATCGGCGCGTCCATCGGACTC
CGGGCATTATCAGTGTAATCCATCAAATGCAAAGCCCAAAAGCGTTACAG
TACATGTGCTCAATGGTGTTTCCCATTCCGTTTCCAGGGGAGTTCCCAGC
AGCAATGCAGCACGCGGCACCAGTGCATCCTCGCCCCTCGCCCACTCGCT
GTCTGTTTGTGTACCTGTTTGTGTGCTTCTGCAGCTGGGCGCTTGCAGGT
GGATCGCTGCGCTGCTGGGCGCCGCTCTGGCCACGCCCCCACCGCTCCGT
TCCACCCGGCGGGCGACGGGGGAGCGTCCTGGATCGCCAGGATGTGCGCC
AATCGCCTGCGACATGCGGCACTTCCTCGCCAGCGTTCTGAGGTGGCAAT
GGCGATGGTGTTGGCGCTGGCACTGGAAAGGTACGCAACAGCAGGATCCA
CGGCATTATCTGAAGCCACAATCACGCAGGGTGGCGGCAGCGTGTAGGCA
GCCCTACGAGGCGGACATAAGGGCAAGCTTTCTAGACCAT

BO17086.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:38:37
Subject Length Description Subject Range Query Range Score Percent Strand
dpr9-RB 1809 CG33485-PB 1..1806 17..1822 9030 100 Plus
dpr9-RA 1809 CG33485-PA 1..1806 17..1822 9030 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:38:39
Subject Length Description Subject Range Query Range Score Percent Strand
dpr9-RB 4826 CG33485-RB 764..2569 17..1822 9030 100 Plus
dpr9-RA 3272 CG33485-RA 764..2569 17..1822 9030 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:38:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15066596..15067085 877..388 2450 100 Minus
3R 32079331 3R 15057187..15057594 1822..1415 2040 100 Minus
3R 32079331 3R 15071452..15071824 389..17 1865 100 Minus
3R 32079331 3R 15063120..15063343 1100..877 1120 100 Minus
3R 32079331 3R 15061457..15061645 1417..1229 945 100 Minus
3R 32079331 3R 15062351..15062479 1228..1100 645 100 Minus
Blast to na_te.dros performed 2014-11-28 00:38:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3269..3378 20..126 164 63.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1527..1587 217..277 134 68.9 Plus
TART-A 13424 TART-A 13424bp 8939..8982 232..275 130 77.3 Plus
BS 5142 BS BS 5142bp 2045..2121 223..299 124 62.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2368 647..710 119 67.2 Plus

BO17086.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:05:32 Download gff for BO17086.complete
Subject Subject Range Query Range Percent Splice Strand
dpr9-RA 1..1809 17..1825 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:55:30 Download gff for BO17086.complete
Subject Subject Range Query Range Percent Splice Strand
dpr9-RA 763..2568 17..1824 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:28:41 Download gff for BO17086.complete
Subject Subject Range Query Range Percent Splice Strand
dpr9-RA 763..2568 17..1824 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:05:33 Download gff for BO17086.complete
Subject Subject Range Query Range Percent Splice Strand
dpr9-RA 763..2574 17..1829 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:35:30 Download gff for BO17086.complete
Subject Subject Range Query Range Percent Splice Strand
dpr9-RA 764..2569 17..1824 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:35:30 Download gff for BO17086.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15057184..15057593 1416..1824 99 <- Minus
3R 15061459..15061645 1229..1415 100 <- Minus
3R 15062351..15062478 1101..1228 100 <- Minus
3R 15063120..15063342 878..1100 100 <- Minus
3R 15066596..15067083 390..877 100 <- Minus
3R 15071452..15071824 17..389 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:28:41 Download gff for BO17086.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10887181..10887367 1229..1415 100 <- Minus
arm_3R 10882906..10883315 1416..1824 99 <- Minus
arm_3R 10888073..10888200 1101..1228 100 <- Minus
arm_3R 10888842..10889064 878..1100 100 <- Minus
arm_3R 10892318..10892805 390..877 100 <- Minus
arm_3R 10897174..10897546 17..389 100   Minus

BO17086.pep Sequence

Translation from 16 to 1840

> BO17086.pep
MATFQMEMRQQQHQRTNLRQRAAAVATSKARRQRQHHLQPESTDSPPYST
DCIRLWPGCGPTTADRVNGNPPTCNNTSSSDIGGNISGNTSNRISCCSCN
FGRQRALIMLSMLVVVMALMSGNGVYAAQRDSYNSKDMSSSNNALPNEGV
GGSAAGAGEAAAPGPTGIDGSGSGNNSSGNNKNGHPAAGSGAASESAALT
TDASRSSVGGATTITGIPSSSLHKASSASSNTFSSQLASGFHRNSIDLEE
ARNAGPYFDKAFSKNVTALLGKTAYLNCRVKNLGNKTMLLQVSWVRHRDI
HLLTVGRYTYTSDQRFRAIHQPQTEDWMLQIKYPQHRDSGIYECQVSTTP
HMSHYIHLNVVEPSTEIIGAPDLYIESGSTINLTCIIQNSPEPPAYIFWN
HNNAFPSHPQIINYDSPRGGVSVVTNKGDTTTSFLLIKSARPSDSGHYQC
NPSNAKPKSVTVHVLNGVSHSVSRGVPSSNAARGTSASSPLAHSLSVCVP
VCVLLQLGACRWIAALLGAALATPPPLRSTRRATGERPGSPGCAPIACDM
RHFLASVLRWQWRWCWRWHWKGTQQQDPRHYLKPQSRRVAAACRQPYEAD
IRASFLDH

BO17086.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:28:01
Subject Length Description Subject Range Query Range Score Percent Strand
dpr9-PB 602 CG33485-PB 1..602 1..602 3209 100 Plus
dpr9-PA 602 CG33485-PA 1..602 1..602 3209 100 Plus
dpr8-PB 344 CG32600-PB 33..303 247..534 736 51.4 Plus
dpr6-PE 283 CG14162-PE 73..274 256..467 732 64.2 Plus
dpr6-PA 283 CG14162-PA 73..274 256..467 732 64.2 Plus