Clone Sequence Records
BO17092.5prime Sequence
602 bp (601 high quality bases) assembled on 2006-10-13
> BO17092.5prime
GAAGTTATCAGTCGACATGGACGCGAGCAGATACAAGGTCGACGGCGAGA
ACGACAATTGCGGGGCGACCTTGGCCGCTGTAAATCTGAATGTCCTTCCC
GATGAGATACTGGAGTTCATATTCACCTACCTGCCACCCTACGGCGACTT
GGAGCACTGCAGCCTGGTGTGCAAGCGATGGCACGCCATTGTGAAGAACC
TTGTGCGTCGTTCCAGACACAATCTCGAGAAGGGCCTCATCGACTTTCGA
CTGCGCTGGGAGGTGTTTTCCCAGCAGACAGTCAATGGCGGGGCAGGAGC
ACTATTATCCTTTATTGCCGGAAGATTTGCTCATTCGGCTGTGCGGCAAG
ACAACTCCATGTACGTATTCGGCGGTGGATCCTCGTCGGACACCACCTTC
AACGATCTGTGGCGCTTTGATTTGACGCACATGCGGTGGGCGCGGCCAGT
GGCCACAGGAACCTATCCCTCGCCCAAGGGCAGTGCATCAATGGTGGCGT
GGCGGAACCAGCTGATACTCTTTGGCGGATGGCGATACCCCTCGCTACAT
CCGCCCTACCAACCATGGTGCTTATTTGACGAGCTGCACTACTACGATCT
TG
BO17092.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:04:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6758-PA | 2004 | CG6758-RA | 1..586 | 17..602 | 2930 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:46:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6758-RA | 2392 | CG6758-RA | 216..801 | 17..602 | 2930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:46:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22175376..22175780 | 198..602 | 2025 | 100 | Plus |
2R | 25286936 | 2R | 22175137..22175317 | 17..197 | 905 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:46:14 has no hits.
BO17092.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:02:17 Download gff for
BO17092.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6758-PA | 1..586 | 17..602 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:32:32 Download gff for
BO17092.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6758-RA | 213..801 | 10..602 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:18:01 Download gff for
BO17092.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6758-RA | 213..801 | 10..602 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:18:01 Download gff for
BO17092.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22175134..22175317 | 10..197 | 97 | -> | Plus |
2R | 22175376..22175780 | 198..602 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:32:32 Download gff for
BO17092.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18062639..18062822 | 10..197 | 97 | -> | Plus |
arm_2R | 18062881..18063285 | 198..602 | 100 | | Plus |
BO17092.3prime Sequence
601 bp (527 high quality bases) assembled on 2006-10-13
> BO17092.3prime
ATGGTCTAGAAAGCTTGCGATAATATCACGTGGCACACTCAGGAAGTGTA
TGGAATTGGACACATGATGTGTGATGTCCGTTAGTGTCTCCTTGTGCACG
CCCCCGAAGAGGATGAGCTCGCCGTTGCCAGCAATGAGGCTCGAGAGGAT
TAGCCGATCCGGAGCACCCTTAAGCACTCCGAAGTTTTTGTATTCCACCC
ACTCGAGGGCGGGTTCGCTGCTGTCCAAAATGCCGGAGATGTCACACACG
AACAGGGATTGCACATTGCAGCGCAATCGTTTGGGCGAGGGTGCGCGCAG
CGGTTGTGGTTCCACTTGGGCGGCCGCCGGTGCGCTGCGTCGCGAATTGC
GAATGGCGTTCATCTTCTCCTCCATGCGTCGTATTCGCTCGTTGTGATCC
CGCGAAGCACTCCGCGATCGTGTGGGCACATTGAAGGCGGCCATTCGAAA
GGGATCCTCATAGAGCTCATCGAAACGTTTTGGTAGCCTAGGTTCATTAT
CACGACACCTTAGAGCTAAATTTCTTTGCAAACGCTGTGCGGCATCCACA
TCGCCGTCGGCGGGAGATGGCGGAGCATTTGGTCGCACTGGCGGGGATGG
A
BO17092.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:04:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6758-PA | 2004 | CG6758-RA | 1419..2001 | 601..19 | 2915 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:13:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6758-RA | 2392 | CG6758-RA | 1634..2216 | 601..19 | 2915 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:12:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22176813..22177252 | 458..19 | 2200 | 100 | Minus |
2R | 25286936 | 2R | 22176613..22176758 | 601..456 | 730 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:12:58 has no hits.
BO17092.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:02:16 Download gff for
BO17092.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6758-PA | 1420..2004 | 15..600 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:20:53 Download gff for
BO17092.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6758-RA | 1635..2226 | 5..600 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:21:37 Download gff for
BO17092.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6758-RA | 1635..2226 | 5..600 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:21:37 Download gff for
BO17092.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22176614..22176757 | 457..600 | 100 | -> | Minus |
2R | 22176815..22177262 | 5..456 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:20:53 Download gff for
BO17092.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18064119..18064262 | 457..600 | 100 | -> | Minus |
arm_2R | 18064320..18064767 | 5..456 | 98 | | Minus |
BO17092.complete Sequence
2035 bp assembled on 2007-03-23
GenBank Submission: FJ634022
> BO17092.complete
GAAGTTATCAGTCGACATGGACGCGAGCAGATACAAGGTCGACGGCGAGA
ACGACAATTGCGGGGCGACCTTGGCCGCTGTAAATCTGAATGTCCTTCCC
GATGAGATACTGGAGTTCATATTCACCTACCTGCCACCCTACGGCGACTT
GGAGCACTGCAGCCTGGTGTGCAAGCGATGGCACGCCATTGTGAAGAACC
TTGTGCGTCGTTCCAGACACAATCTCGAGAAGGGCCTCATCGACTTTCGA
CTGCGCTGGGAGGTGTTTTCCCAGCAGACAGTCAATGGCGGGGCAGGAGC
ACTATTATCCTTTATTGCCGGAAGATTTGCTCATTCGGCTGTGCGGCAAG
ACAACTCCATGTACGTATTCGGCGGTGGATCCTCGTCGGACACCACCTTC
AACGATCTGTGGCGCTTTGATTTGACGCACATGCGGTGGGCGCGGCCAGT
GGCCACAGGAACCTATCCCTCGCCCAAGGGCAGTGCATCAATGGTGGCGT
GGCGGAACCAGCTGATACTCTTTGGCGGATGGCGATACCCCTCGCTACAT
CCGCCCTACCAACCATGGTGCTTATTTGACGAGCTGCACTACTACGATCT
TGGAAAGAACCGTTGGCTGCTGCGAAGCTCCCTATCTTCCCCACCACCGA
TGGCTGGACACTCGGCCACGGTACATGGCGATCGGATGGTAGTTTTTGGT
GGTTACCAGATCAAAGACGATTTCAATGTGAACTCGAACGACACATGGGT
ACTGGATCTGCCGGAGCAGCGCTGGTGGCAGCCGCTCTTTGTGGGCAACA
CGCGACCCAGTCCGCGATACGGACAAATACAGGTGGAGTTGGGAAGGAAC
CATCTGCTGATCGTGGGAGGATGTGGCGGTGCCAATCGCGTGTACACTGA
TGCCTGGCTGCTGGACATGACCAGGGATGTATGGAGCTGGAAGTCTATTG
CTGTGCGCAACAAGCGCTTTGGAGCCGTCCACATGTGGTGCAATCCCGGT
TGCAAGGTCAACAACTACCTGGTGGTCGTGGGCCCATCGCCCAACATGCC
GCAGGACTTCCAAATGATGAAGCAAAGCAGAGTCCCCGTCGTTGGAGGCC
GTGGACCTCCGCCGCCGAATCCTCTTCAAAATGTACCTCCAAGGGGATAC
CGGATACCAGTTCCGGATCGTCGACTAGGTGGAGGTGGATTGGGTGGACC
TGGCCAAAATCGCGGAGGAAACATCCGTCCTGGAGTGGGAGGTGCAGCAG
CTGCACTGGGTCCTCAAGAACAGTATTTGGCTAACCGGAGAGCAATTCTT
AATCAACACATGCAGCAAGCGCAGCAATTCCTGCACAACAGCAATGTGAA
CAATAATAACAATAATTACCAACCGCGCTCGGGAAGATTGAGTGATCTGC
ATGCCCCGCCAGCTGCGGCTGCAGCTGCTTCTCCTCCATCCCCGCCAGTG
CGACCAAATGCTCCGCCATCTCCCGCCGACGGCGATGTGGATGCCGCACA
GCGTTTGCAAAGAAATTTAGCTCTAAGGTGTCGTGATAATGAACCTAGGC
TACCAAAACGTTTCGATGAGCTCTATGAGGATCCCTTTCGAATGGCCGCC
TTCAATGTGCCCACACGATCGCGGAGTGCTTCGCGGGATCACAACGAGCG
AATACGACGCATGGAGGAGAAGATGAACGCCATTCGCAATTCGCGACGCA
GCGCACCGGCGGCCGCCCAAGTGGAACCACAACCGCTGCGCGCACCCTCG
CCCAAACGATTGCGCTGCAATGTGCAATCCCTGTTCGTGTGTGACATCTC
CGGCATTTTGGACAGCAGCGAACCCGCCCTCGAGTGGGTGGAATACAAAA
ACTTCGGAGTGCTTAAGGGTGCTCCGGATCGGCTAATCCTCTCGAGCCTC
ATTGCTGGCAACGGCGAGCTCATCCTCTTCGGGGGCGTGCACAAGGAGAC
ACTAACGGACATCACACATCATGTGTCCAATTCCATACACTTCCTGAGTG
TGCCACGTGATATTATCGCAAGCTTTCTAGACCAT
BO17092.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:55:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6758-RA | 2004 | CG6758-PA | 1..2001 | 17..2017 | 10005 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:55:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6758-RA | 2392 | CG6758-RA | 216..2216 | 17..2017 | 10005 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:55:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22175376..22176758 | 198..1580 | 6915 | 100 | Plus |
2R | 25286936 | 2R | 22176813..22177252 | 1578..2017 | 2200 | 100 | Plus |
2R | 25286936 | 2R | 22175137..22175317 | 17..197 | 905 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:55:01 has no hits.
BO17092.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:10:41 Download gff for
BO17092.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6758-RA | 1..2004 | 17..2021 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:28:30 Download gff for
BO17092.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6758-RA | 229..2242 | 10..2031 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:33 Download gff for
BO17092.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6758-RA | 216..2216 | 17..2019 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:10:41 Download gff for
BO17092.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6758-RA | 229..2242 | 10..2031 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:30:00 Download gff for
BO17092.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6758-RA | 216..2216 | 17..2019 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:30:00 Download gff for
BO17092.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22175137..22175317 | 17..197 | 100 | -> | Plus |
2R | 22175376..22176757 | 198..1579 | 100 | -> | Plus |
2R | 22176815..22177252 | 1580..2019 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:33 Download gff for
BO17092.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18064320..18064757 | 1580..2019 | 99 | | Plus |
arm_2R | 18062642..18062822 | 17..197 | 100 | -> | Plus |
arm_2R | 18062881..18064262 | 198..1579 | 100 | -> | Plus |
BO17092.pep Sequence
Translation from 16 to 2035
> BO17092.pep
MDASRYKVDGENDNCGATLAAVNLNVLPDEILEFIFTYLPPYGDLEHCSL
VCKRWHAIVKNLVRRSRHNLEKGLIDFRLRWEVFSQQTVNGGAGALLSFI
AGRFAHSAVRQDNSMYVFGGGSSSDTTFNDLWRFDLTHMRWARPVATGTY
PSPKGSASMVAWRNQLILFGGWRYPSLHPPYQPWCLFDELHYYDLGKNRW
LLRSSLSSPPPMAGHSATVHGDRMVVFGGYQIKDDFNVNSNDTWVLDLPE
QRWWQPLFVGNTRPSPRYGQIQVELGRNHLLIVGGCGGANRVYTDAWLLD
MTRDVWSWKSIAVRNKRFGAVHMWCNPGCKVNNYLVVVGPSPNMPQDFQM
MKQSRVPVVGGRGPPPPNPLQNVPPRGYRIPVPDRRLGGGGLGGPGQNRG
GNIRPGVGGAAAALGPQEQYLANRRAILNQHMQQAQQFLHNSNVNNNNNN
YQPRSGRLSDLHAPPAAAAAASPPSPPVRPNAPPSPADGDVDAAQRLQRN
LALRCRDNEPRLPKRFDELYEDPFRMAAFNVPTRSRSASRDHNERIRRME
EKMNAIRNSRRSAPAAAQVEPQPLRAPSPKRLRCNVQSLFVCDISGILDS
SEPALEWVEYKNFGVLKGAPDRLILSSLIAGNGELILFGGVHKETLTDIT
HHVSNSIHFLSVPRDIIASFLDH
BO17092.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:32:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6758-PA | 667 | CG6758-PA | 1..667 | 1..667 | 3613 | 100 | Plus |
CG3711-PE | 975 | CG3711-PE | 250..430 | 101..288 | 190 | 29.1 | Plus |
CG3711-PD | 998 | CG3711-PD | 250..430 | 101..288 | 190 | 29.1 | Plus |