Clone BO17092 Report

Search the DGRC for BO17092

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:170
Well:92
Vector:pDNR-Dual
Associated Gene/TranscriptCG6758-RA
Protein status:BO17092.pep: validated full length
Sequenced Size:2035

Clone Sequence Records

BO17092.5prime Sequence

602 bp (601 high quality bases) assembled on 2006-10-13

> BO17092.5prime
GAAGTTATCAGTCGACATGGACGCGAGCAGATACAAGGTCGACGGCGAGA
ACGACAATTGCGGGGCGACCTTGGCCGCTGTAAATCTGAATGTCCTTCCC
GATGAGATACTGGAGTTCATATTCACCTACCTGCCACCCTACGGCGACTT
GGAGCACTGCAGCCTGGTGTGCAAGCGATGGCACGCCATTGTGAAGAACC
TTGTGCGTCGTTCCAGACACAATCTCGAGAAGGGCCTCATCGACTTTCGA
CTGCGCTGGGAGGTGTTTTCCCAGCAGACAGTCAATGGCGGGGCAGGAGC
ACTATTATCCTTTATTGCCGGAAGATTTGCTCATTCGGCTGTGCGGCAAG
ACAACTCCATGTACGTATTCGGCGGTGGATCCTCGTCGGACACCACCTTC
AACGATCTGTGGCGCTTTGATTTGACGCACATGCGGTGGGCGCGGCCAGT
GGCCACAGGAACCTATCCCTCGCCCAAGGGCAGTGCATCAATGGTGGCGT
GGCGGAACCAGCTGATACTCTTTGGCGGATGGCGATACCCCTCGCTACAT
CCGCCCTACCAACCATGGTGCTTATTTGACGAGCTGCACTACTACGATCT
TG

BO17092.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:04:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG6758-PA 2004 CG6758-RA 1..586 17..602 2930 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:46:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG6758-RA 2392 CG6758-RA 216..801 17..602 2930 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:46:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22175376..22175780 198..602 2025 100 Plus
2R 25286936 2R 22175137..22175317 17..197 905 100 Plus
Blast to na_te.dros performed on 2015-02-12 10:46:14 has no hits.

BO17092.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:02:17 Download gff for BO17092.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6758-PA 1..586 17..602 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:32:32 Download gff for BO17092.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6758-RA 213..801 10..602 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:18:01 Download gff for BO17092.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6758-RA 213..801 10..602 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:18:01 Download gff for BO17092.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22175134..22175317 10..197 97 -> Plus
2R 22175376..22175780 198..602 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:32:32 Download gff for BO17092.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18062639..18062822 10..197 97 -> Plus
arm_2R 18062881..18063285 198..602 100   Plus

BO17092.3prime Sequence

601 bp (527 high quality bases) assembled on 2006-10-13

> BO17092.3prime
ATGGTCTAGAAAGCTTGCGATAATATCACGTGGCACACTCAGGAAGTGTA
TGGAATTGGACACATGATGTGTGATGTCCGTTAGTGTCTCCTTGTGCACG
CCCCCGAAGAGGATGAGCTCGCCGTTGCCAGCAATGAGGCTCGAGAGGAT
TAGCCGATCCGGAGCACCCTTAAGCACTCCGAAGTTTTTGTATTCCACCC
ACTCGAGGGCGGGTTCGCTGCTGTCCAAAATGCCGGAGATGTCACACACG
AACAGGGATTGCACATTGCAGCGCAATCGTTTGGGCGAGGGTGCGCGCAG
CGGTTGTGGTTCCACTTGGGCGGCCGCCGGTGCGCTGCGTCGCGAATTGC
GAATGGCGTTCATCTTCTCCTCCATGCGTCGTATTCGCTCGTTGTGATCC
CGCGAAGCACTCCGCGATCGTGTGGGCACATTGAAGGCGGCCATTCGAAA
GGGATCCTCATAGAGCTCATCGAAACGTTTTGGTAGCCTAGGTTCATTAT
CACGACACCTTAGAGCTAAATTTCTTTGCAAACGCTGTGCGGCATCCACA
TCGCCGTCGGCGGGAGATGGCGGAGCATTTGGTCGCACTGGCGGGGATGG
A

BO17092.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:04:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG6758-PA 2004 CG6758-RA 1419..2001 601..19 2915 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:13:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG6758-RA 2392 CG6758-RA 1634..2216 601..19 2915 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:12:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22176813..22177252 458..19 2200 100 Minus
2R 25286936 2R 22176613..22176758 601..456 730 100 Minus
Blast to na_te.dros performed on 2015-02-10 15:12:58 has no hits.

BO17092.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:02:16 Download gff for BO17092.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6758-PA 1420..2004 15..600 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:20:53 Download gff for BO17092.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6758-RA 1635..2226 5..600 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:21:37 Download gff for BO17092.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6758-RA 1635..2226 5..600 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:21:37 Download gff for BO17092.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 22176614..22176757 457..600 100 -> Minus
2R 22176815..22177262 5..456 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:20:53 Download gff for BO17092.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18064119..18064262 457..600 100 -> Minus
arm_2R 18064320..18064767 5..456 98   Minus

BO17092.complete Sequence

2035 bp assembled on 2007-03-23

GenBank Submission: FJ634022

> BO17092.complete
GAAGTTATCAGTCGACATGGACGCGAGCAGATACAAGGTCGACGGCGAGA
ACGACAATTGCGGGGCGACCTTGGCCGCTGTAAATCTGAATGTCCTTCCC
GATGAGATACTGGAGTTCATATTCACCTACCTGCCACCCTACGGCGACTT
GGAGCACTGCAGCCTGGTGTGCAAGCGATGGCACGCCATTGTGAAGAACC
TTGTGCGTCGTTCCAGACACAATCTCGAGAAGGGCCTCATCGACTTTCGA
CTGCGCTGGGAGGTGTTTTCCCAGCAGACAGTCAATGGCGGGGCAGGAGC
ACTATTATCCTTTATTGCCGGAAGATTTGCTCATTCGGCTGTGCGGCAAG
ACAACTCCATGTACGTATTCGGCGGTGGATCCTCGTCGGACACCACCTTC
AACGATCTGTGGCGCTTTGATTTGACGCACATGCGGTGGGCGCGGCCAGT
GGCCACAGGAACCTATCCCTCGCCCAAGGGCAGTGCATCAATGGTGGCGT
GGCGGAACCAGCTGATACTCTTTGGCGGATGGCGATACCCCTCGCTACAT
CCGCCCTACCAACCATGGTGCTTATTTGACGAGCTGCACTACTACGATCT
TGGAAAGAACCGTTGGCTGCTGCGAAGCTCCCTATCTTCCCCACCACCGA
TGGCTGGACACTCGGCCACGGTACATGGCGATCGGATGGTAGTTTTTGGT
GGTTACCAGATCAAAGACGATTTCAATGTGAACTCGAACGACACATGGGT
ACTGGATCTGCCGGAGCAGCGCTGGTGGCAGCCGCTCTTTGTGGGCAACA
CGCGACCCAGTCCGCGATACGGACAAATACAGGTGGAGTTGGGAAGGAAC
CATCTGCTGATCGTGGGAGGATGTGGCGGTGCCAATCGCGTGTACACTGA
TGCCTGGCTGCTGGACATGACCAGGGATGTATGGAGCTGGAAGTCTATTG
CTGTGCGCAACAAGCGCTTTGGAGCCGTCCACATGTGGTGCAATCCCGGT
TGCAAGGTCAACAACTACCTGGTGGTCGTGGGCCCATCGCCCAACATGCC
GCAGGACTTCCAAATGATGAAGCAAAGCAGAGTCCCCGTCGTTGGAGGCC
GTGGACCTCCGCCGCCGAATCCTCTTCAAAATGTACCTCCAAGGGGATAC
CGGATACCAGTTCCGGATCGTCGACTAGGTGGAGGTGGATTGGGTGGACC
TGGCCAAAATCGCGGAGGAAACATCCGTCCTGGAGTGGGAGGTGCAGCAG
CTGCACTGGGTCCTCAAGAACAGTATTTGGCTAACCGGAGAGCAATTCTT
AATCAACACATGCAGCAAGCGCAGCAATTCCTGCACAACAGCAATGTGAA
CAATAATAACAATAATTACCAACCGCGCTCGGGAAGATTGAGTGATCTGC
ATGCCCCGCCAGCTGCGGCTGCAGCTGCTTCTCCTCCATCCCCGCCAGTG
CGACCAAATGCTCCGCCATCTCCCGCCGACGGCGATGTGGATGCCGCACA
GCGTTTGCAAAGAAATTTAGCTCTAAGGTGTCGTGATAATGAACCTAGGC
TACCAAAACGTTTCGATGAGCTCTATGAGGATCCCTTTCGAATGGCCGCC
TTCAATGTGCCCACACGATCGCGGAGTGCTTCGCGGGATCACAACGAGCG
AATACGACGCATGGAGGAGAAGATGAACGCCATTCGCAATTCGCGACGCA
GCGCACCGGCGGCCGCCCAAGTGGAACCACAACCGCTGCGCGCACCCTCG
CCCAAACGATTGCGCTGCAATGTGCAATCCCTGTTCGTGTGTGACATCTC
CGGCATTTTGGACAGCAGCGAACCCGCCCTCGAGTGGGTGGAATACAAAA
ACTTCGGAGTGCTTAAGGGTGCTCCGGATCGGCTAATCCTCTCGAGCCTC
ATTGCTGGCAACGGCGAGCTCATCCTCTTCGGGGGCGTGCACAAGGAGAC
ACTAACGGACATCACACATCATGTGTCCAATTCCATACACTTCCTGAGTG
TGCCACGTGATATTATCGCAAGCTTTCTAGACCAT

BO17092.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:55:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG6758-RA 2004 CG6758-PA 1..2001 17..2017 10005 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:55:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG6758-RA 2392 CG6758-RA 216..2216 17..2017 10005 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:55:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22175376..22176758 198..1580 6915 100 Plus
2R 25286936 2R 22176813..22177252 1578..2017 2200 100 Plus
2R 25286936 2R 22175137..22175317 17..197 905 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:55:01 has no hits.

BO17092.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:10:41 Download gff for BO17092.complete
Subject Subject Range Query Range Percent Splice Strand
CG6758-RA 1..2004 17..2021 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:28:30 Download gff for BO17092.complete
Subject Subject Range Query Range Percent Splice Strand
CG6758-RA 229..2242 10..2031 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:33 Download gff for BO17092.complete
Subject Subject Range Query Range Percent Splice Strand
CG6758-RA 216..2216 17..2019 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:10:41 Download gff for BO17092.complete
Subject Subject Range Query Range Percent Splice Strand
CG6758-RA 229..2242 10..2031 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:30:00 Download gff for BO17092.complete
Subject Subject Range Query Range Percent Splice Strand
CG6758-RA 216..2216 17..2019 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:30:00 Download gff for BO17092.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22175137..22175317 17..197 100 -> Plus
2R 22175376..22176757 198..1579 100 -> Plus
2R 22176815..22177252 1580..2019 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:33 Download gff for BO17092.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18064320..18064757 1580..2019 99   Plus
arm_2R 18062642..18062822 17..197 100 -> Plus
arm_2R 18062881..18064262 198..1579 100 -> Plus

BO17092.pep Sequence

Translation from 16 to 2035

> BO17092.pep
MDASRYKVDGENDNCGATLAAVNLNVLPDEILEFIFTYLPPYGDLEHCSL
VCKRWHAIVKNLVRRSRHNLEKGLIDFRLRWEVFSQQTVNGGAGALLSFI
AGRFAHSAVRQDNSMYVFGGGSSSDTTFNDLWRFDLTHMRWARPVATGTY
PSPKGSASMVAWRNQLILFGGWRYPSLHPPYQPWCLFDELHYYDLGKNRW
LLRSSLSSPPPMAGHSATVHGDRMVVFGGYQIKDDFNVNSNDTWVLDLPE
QRWWQPLFVGNTRPSPRYGQIQVELGRNHLLIVGGCGGANRVYTDAWLLD
MTRDVWSWKSIAVRNKRFGAVHMWCNPGCKVNNYLVVVGPSPNMPQDFQM
MKQSRVPVVGGRGPPPPNPLQNVPPRGYRIPVPDRRLGGGGLGGPGQNRG
GNIRPGVGGAAAALGPQEQYLANRRAILNQHMQQAQQFLHNSNVNNNNNN
YQPRSGRLSDLHAPPAAAAAASPPSPPVRPNAPPSPADGDVDAAQRLQRN
LALRCRDNEPRLPKRFDELYEDPFRMAAFNVPTRSRSASRDHNERIRRME
EKMNAIRNSRRSAPAAAQVEPQPLRAPSPKRLRCNVQSLFVCDISGILDS
SEPALEWVEYKNFGVLKGAPDRLILSSLIAGNGELILFGGVHKETLTDIT
HHVSNSIHFLSVPRDIIASFLDH

BO17092.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:32:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG6758-PA 667 CG6758-PA 1..667 1..667 3613 100 Plus
CG3711-PE 975 CG3711-PE 250..430 101..288 190 29.1 Plus
CG3711-PD 998 CG3711-PD 250..430 101..288 190 29.1 Plus