Clone Sequence Records
BO17094.3prime Sequence
840 bp (769 high quality bases) assembled on 2006-10-13
> BO17094.3prime
ATGGTCTAGAAAGCTTGCGATATCTCCCTCAGCCAGTTTGAATGTCTTGA
GATCGATATCGTCATAGGGAGCCACATCGTGACCAGGATCCTCCTTCTCC
TCATCCAGCAGACAGTATATGCTATCCGTTTCCTGTTTGATGATCTCGTC
ACCCAGTCGCTTCCAAAAAGGACGACAGCGGTTCTTCCACTGACGCAGGT
TGAAAAAGGCGCAATAGCGAGTGGTAGACGACTTAAGCATGGCCATATAA
AGTGGTGTGATTTCATCCGCCATTAACTTGGCCTGCAGATAGTTGGCCAT
CTTGCGGCTGTGCAGATCGTTAAAGTCGACGTAGATGCGCTTGGCATGCT
CATAGCATTTCTTAGCGATACTTGTCATCTGTGTGTCCTTGGCAAAGATC
TTTCCCAGATGCAAAAGTATCTCTGCCTCCAAATCGCGGTGGGTATAGAG
TCGGGATAAGCGAAGAGCTCTCTTGTAACACGAAGTGGCCTTCTCCACGT
GCTCAAAAATCTCGGAACATTGCCCTTGGATCAGGTAGTACTTAATGTTG
AGCTTAACGAATCGATATTCGGTGCAGGCCAGGATCTGGGTTTTGATCTG
CTCAAGGCACTGCTGCGCCGAGTTAAAGTTACCAATCTCCATTAGAAAGT
AGGCACGCTCCAGAAAAGTGTCACAGAAAATCTCCATGTTCTTATCCCTG
CCAATTTCGGCTATTAGTACAGTGGCTCGTCGGGCCATGGCCACCGCATC
CTCGGGATGCTGGCGTACAATGGACTTGCCCTGGATGAGGAGCTGCCTGG
CGAGATTCTGGGCCACAGCTCGTGAAGCGTAAGACTGCCT
BO17094.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31798-PA | 1476 | CG31798-RA | 676..1473 | 816..19 | 3990 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:31:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31798-RB | 1643 | CG31798-RB | 720..1542 | 840..19 | 4075 | 99.8 | Minus |
CG31798-RA | 1913 | CG31798-RA | 720..1542 | 840..19 | 4075 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:31:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19395323..19395819 | 515..19 | 2455 | 99.6 | Minus |
2L | 23513712 | 2L | 19395076..19395271 | 704..509 | 980 | 100 | Minus |
2L | 23513712 | 2L | 19394879..19395015 | 840..705 | 620 | 98.5 | Minus |
Blast to na_te.dros performed on 2015-02-06 10:31:36 has no hits.
BO17094.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:02:20 Download gff for
BO17094.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31798-PA | 651..1476 | 15..840 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:42:33 Download gff for
BO17094.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31798-RA | 720..1548 | 11..840 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:27:05 Download gff for
BO17094.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31798-RA | 720..1548 | 11..840 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:27:05 Download gff for
BO17094.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19394879..19395015 | 705..840 | 98 | -> | Minus |
2L | 19395076..19395271 | 509..704 | 100 | -> | Minus |
2L | 19395330..19395825 | 11..508 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:42:33 Download gff for
BO17094.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19394879..19395015 | 705..840 | 98 | -> | Minus |
arm_2L | 19395076..19395271 | 509..704 | 100 | -> | Minus |
arm_2L | 19395330..19395825 | 11..508 | 99 | | Minus |
BO17094.5prime Sequence
812 bp (761 high quality bases) assembled on 2006-10-13
> BO17094.5prime
GAAGTTATCAGTCGACATGTCCTTGCAGTGGCAAAATGAGGTGGTGCGGA
TTACGCGCCAAGTGAAGCGCAATCTACCGCACCGAAATTTCCGAGAGATT
AACTTTGATCGCGAGACCATAAGGCAAGGAATCACCCCCCTGACCTACGA
TGAGGCGCGCCGTCTTAAGGGACCAGTTTTCGAGGCTCTGGAGGATGAGT
TGCGTCGAGCAGGATGCACCATGCTGCCGGAGTTTCTCCACTGCCTGGCC
ACCAAGGAGAATGCTCTTTTCGAGAGCCTAAATATCCGGGAACGTCTATC
CGATGACTCGGAATTGCTCTACGGAATGGTGGATCGACTCCGGGATGCCG
AACTGGCTGTTTGCCTGAACAAGCACCGGGGTCTCAAAAAGTGTTTTGGC
CTATTCTTCGAGACCATGCAGCTGCTGGAGCCGTATCGTCAGAAATACGC
ATACGCCCTGGTGGCCCTCAATGAGCACATCATCTCGTTGTGCCGCAACA
TTGCCGGCCAGGAACATGATGCCGCCGAGTACATATCCCGCATCTACTAC
ATCTATTCCATGTACCTGGTGAACACAGGCCAGCGAACCTCGGCCATCAA
TTTCCTACAAATTGCCATGGATCTGGTGCGTGGTCACGTGTGGACCGCCG
AGGTGGGAATGCCCGCAGGCAGTCTTACGCTCCACGAGCTGGTGGCCCAG
AATCTCGCCAGGCAGCTCCTCATCCAGGGCAAGTCCATTGTACGCCAGCA
TCCCGAGGATGCGGTGGCCATGGCCCGACGAGCCACTGTACTAATAGCCG
AAATTGGCAGGG
BO17094.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31798-PA | 1476 | CG31798-RA | 1..796 | 17..812 | 3980 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:11:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31798-RB | 1643 | CG31798-RB | 69..865 | 16..812 | 3985 | 100 | Plus |
CG31798-RA | 1913 | CG31798-RA | 69..865 | 16..812 | 3985 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:11:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19394228..19395015 | 16..803 | 3940 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:11:57 has no hits.
BO17094.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:02:20 Download gff for
BO17094.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31798-PA | 1..796 | 17..812 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:03:16 Download gff for
BO17094.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31798-RA | 65..865 | 10..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:22:40 Download gff for
BO17094.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31798-RA | 65..865 | 10..812 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:22:40 Download gff for
BO17094.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19394224..19395020 | 10..810 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:03:16 Download gff for
BO17094.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19394224..19395020 | 10..810 | 99 | | Plus |
BO17094.complete Sequence
1507 bp assembled on 2006-10-11
GenBank Submission: FJ634023
> BO17094.complete
GAAGTTATCAGTCGACATGTCCTTGCAGTGGCAAAATGAGGTGGTGCGGA
TTACGCGCCAAGTGAAGCGCAATCTACCGCACCGAAATTTCCGAGAGATT
AACTTTGATCGCGAGACCATAAGGCAAGGAATCACCCCCCTGACCTACGA
TGAGGCGCGCCGTCTTAAGGGACCAGTTTTCGAGGCTCTGGAGGATGAGT
TGCGTCGAGCAGGATGCACCATGCTGCCGGAGTTTCTCCACTGCCTGGCC
ACCAAGGAGAATGCTCTTTTCGAGAGCCTAAATATCCGGGAACGTCTATC
CGATGACTCGGAATTGCTCTACGGAATGGTGGATCGACTCCGGGATGCCG
AACTGGCTGTTTGCCTGAACAAGCACCGGGGTCTCAAAAAGTGTTTTGGC
CTATTCTTCGAGACCATGCAGCTGCTGGAGCCGTATCGTCAGAAATACGC
ATACGCCCTGGTGGCCCTCAATGAGCACATCATCTCGTTGTGCCGCAACA
TTGCCGGCCAGGAACATGATGCCGCCGAGTACATATCCCGCATCTACTAC
ATCTATTCCATGTACCTGGTGAACACAGGCCAGCGAACCTCGGCCATCAA
TTTCCTACAAATTGCCATGGATCTGGTGCGTGGTCACGTGTGGACCGCCG
AGGTGGGAATGCCCGCAGGCAGTCTTACGCTCCACGAGCTGGTGGCCCAG
AATCTCGCCAGGCAGCTCCTCATCCAGGGCAAGTCCATTGTACGCCAGCA
TCCCGAGGATGCGGTGGCCATGGCCCGACGAGCCACTGTACTAATAGCCG
AAATTGGCAGGGATAAGAACATGGAGATTTTCTGTGACACTTTTCTGGAG
CGTGCCTACTTTCTAATGGAGATTGGTAACTTTAACTCGGCGCAGCAGTG
CCTTGAGCAGATCAAAACCCAGATCCTGGCCTGCACCGAATATCGATTCG
TTAAGCTCAACATTAAGTACTACCTGATCCAAGGGCAATGTTCCGAGATT
TTTGAGCACGTGGAGAAGGCCACTTCGTGTTACAAGAGAGCTCTTCGCTT
ATCCCGACTCTATACCCACCGCGATTTGGAGGCAGAGATACTTTTGCATC
TGGGAAAGATCTTTGCCAAGGACACACAGATGACAAGTATCGCTAAGAAA
TGCTATGAGCATGCCAAGCGCATCTACGTCGACTTTAACGATCTGCACAG
CCGCAAGATGGCCAACTATCTGCAGGCCAAGTTAATGGCGGATGAAATCA
CACCACTTTATATGGCCATGCTTAAGTCGTCTACCACTCGCTATTGCGCC
TTTTTCAACCTGCGTCAGTGGAAGAACCGCTGTCGTCCTTTTTGGAAGCG
ACTGGGTGACGAGATCATCAAACAGGAAACGGATAGCATATACTGTCTGC
TGGATGAGGAGAAGGAGGATCCTGGTCACGATGTGGCTCCCTATGACGAT
ATCGATCTCAAGACATTCAAACTGGCTGAGGGAGATATCGCAAGCTTTCT
AGACCAT
BO17094.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:47:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31798-RB | 1476 | CG31798-PB | 1..1473 | 17..1489 | 7365 | 100 | Plus |
CG31798-RA | 1476 | CG31798-PA | 1..1473 | 17..1489 | 7365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:47:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31798-RB | 1643 | CG31798-RB | 69..1542 | 16..1489 | 7370 | 100 | Plus |
CG31798-RA | 1913 | CG31798-RA | 69..1542 | 16..1489 | 7370 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:47:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19394228..19395015 | 16..803 | 3940 | 100 | Plus |
2L | 23513712 | 2L | 19395323..19395819 | 993..1489 | 2455 | 99.6 | Plus |
2L | 23513712 | 2L | 19395076..19395271 | 804..999 | 980 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:47:34 has no hits.
BO17094.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:25:26 Download gff for
BO17094.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31798-RA | 1..1476 | 17..1493 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:45:45 Download gff for
BO17094.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31798-RA | 65..1548 | 10..1497 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:38:03 Download gff for
BO17094.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31798-RA | 70..1542 | 17..1491 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:25:26 Download gff for
BO17094.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31798-RA | 65..1548 | 10..1497 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:08:16 Download gff for
BO17094.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31798-RA | 70..1542 | 17..1491 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:08:16 Download gff for
BO17094.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19394229..19395015 | 17..803 | 100 | -> | Plus |
2L | 19395076..19395271 | 804..999 | 100 | -> | Plus |
2L | 19395330..19395819 | 1000..1491 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:38:03 Download gff for
BO17094.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19394229..19395015 | 17..803 | 100 | -> | Plus |
arm_2L | 19395076..19395271 | 804..999 | 100 | -> | Plus |
arm_2L | 19395330..19395819 | 1000..1491 | 99 | | Plus |
BO17094.pep Sequence
Translation from 16 to 1507
> BO17094.pep
MSLQWQNEVVRITRQVKRNLPHRNFREINFDRETIRQGITPLTYDEARRL
KGPVFEALEDELRRAGCTMLPEFLHCLATKENALFESLNIRERLSDDSEL
LYGMVDRLRDAELAVCLNKHRGLKKCFGLFFETMQLLEPYRQKYAYALVA
LNEHIISLCRNIAGQEHDAAEYISRIYYIYSMYLVNTGQRTSAINFLQIA
MDLVRGHVWTAEVGMPAGSLTLHELVAQNLARQLLIQGKSIVRQHPEDAV
AMARRATVLIAEIGRDKNMEIFCDTFLERAYFLMEIGNFNSAQQCLEQIK
TQILACTEYRFVKLNIKYYLIQGQCSEIFEHVEKATSCYKRALRLSRLYT
HRDLEAEILLHLGKIFAKDTQMTSIAKKCYEHAKRIYVDFNDLHSRKMAN
YLQAKLMADEITPLYMAMLKSSTTRYCAFFNLRQWKNRCRPFWKRLGDEI
IKQETDSIYCLLDEEKEDPGHDVAPYDDIDLKTFKLAEGDIASFLDH
BO17094.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:01:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31798-PB | 491 | CG31798-PB | 1..491 | 1..491 | 2561 | 100 | Plus |
CG31798-PA | 491 | CG31798-PA | 1..491 | 1..491 | 2561 | 100 | Plus |