Clone Sequence Records
BO17101.3prime Sequence
618 bp (560 high quality bases) assembled on 2006-10-13
> BO17101.3prime
ATGGTCTAGAAAGCTTGCAACAGCGAATGTCTTTTGAGCCTTGCGATAGC
TATACGCCAATGACTTGAGAATGCCAGCACTGGGAATATTTTTGATCGAT
TGCGTGACACTGCTGCGCCACACAATGTCGTTGACGGATGCCTGCAGCAC
CTCCGGAAGCTGGGAGGCCATGGATAGGTGATTCACCACCTGGGTGTAGT
CGCCACGACAGGCGGCATTTCGCTGCAATCGCTTCTGAAGCTCTCGGGGC
AACTGTCGCAGGTGTTGGCATGTAGCCGATGAGGATTTGTCCTGCTCGAA
GATTATGGCTGGTTTCCGGCTCCCTGGTTCCTGGCCCTTCATGTTTACCG
CCACATAGTCGGAAAGTTGTCCCAGGGAGGGTTGGTATAGGGCGAAGAAG
TCATTGATTTGCGGACTAACTATGTTGTGCACTTTCTGTTTGTTTTCCCC
GAAAATCATACGGAAATCGCCCTTGTAACTCAGTCCGGCGATGGTGTGGA
AAAGTCCGTAGGCAGTGAACTTCTCTGGTAAAAGTAGCAGAGCCACTTGC
AGCGCGGATACAAAATTCCTCTCCAGCGCAGCCTTGAGGGGAGGATTATC
AGAAGGATTGACCAGATT
BO17101.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33331-PA | 1029 | CG33331-RA | 427..1026 | 618..19 | 2975 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:17:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33331-RA | 1284 | CG33331-RA | 553..1152 | 618..19 | 2985 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:17:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14887008..14887607 | 618..19 | 2985 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:17:20 has no hits.
BO17101.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:02:22 Download gff for
BO17101.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33331-PA | 427..1029 | 18..618 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:46:58 Download gff for
BO17101.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33331-RA | 533..1139 | 10..618 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:32:10 Download gff for
BO17101.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33331-RA | 553..1159 | 10..618 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:32:10 Download gff for
BO17101.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14887008..14887614 | 10..618 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:46:58 Download gff for
BO17101.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10712730..10713336 | 10..618 | 99 | | Minus |
BO17101.5prime Sequence
585 bp (558 high quality bases) assembled on 2006-10-13
> BO17101.5prime
GAAGTTATCAGTCGACATGCTGGACCTATACAGACGCACGGTGGCGCGGT
TTCCTCTGGGCAGTGTCAGCTATATGTTCGCCTACGGATCCGGCGTCAAA
CAGCAGGAAGGCTATGGAAAAGTCGGCAATGGAAACAACCTGCGTCCTCC
GCCGGGAACCGTTGTGGATCTGGTCTTTTGCGTTCGTGATGCTAGGGGCT
TCCATGCGGAGAACCTGCACCGTCATCCGGACCACTATTCCGCCCTTAGG
CACCTGGGACCGAACTTTGTGGCCAAGTATCAGGAGCGTTTGGGTGCGGG
TGTCTATTGCAACACGTTGGTGCCTCTGCCAGATGTGGGCATTACCATAA
AGTACGGCGTGGTGTCGCAGGAGGAGCTGCTGGAGGATCTGCTTGACTGG
CGGCATCTTTACTTGGCAGGAAGGCTGCACAAACCAGTGACGAATCTGGT
CAATCCTTCTGATAATCCTCCCCTCAAGGCTGCGCTGGAGAGGAATCTTG
TATCCGCGCTGCAAGTGGCTCTGCTACTTTTACCAGAGAAGTTCACTGCC
TACGGACTTTTCACACCATCGCCGGACTGAGTTAC
BO17101.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33331-PA | 1029 | CG33331-RA | 1..546 | 17..562 | 2730 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:51:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33331-RA | 1284 | CG33331-RA | 127..696 | 17..585 | 2825 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:51:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14886582..14887151 | 17..585 | 2800 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:51:13 has no hits.
BO17101.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:02:22 Download gff for
BO17101.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33331-PA | 1..570 | 17..585 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:43:46 Download gff for
BO17101.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33331-RA | 101..676 | 9..585 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:01:48 Download gff for
BO17101.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33331-RA | 121..696 | 9..585 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:01:48 Download gff for
BO17101.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14886576..14887151 | 9..585 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:43:46 Download gff for
BO17101.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10712298..10712873 | 9..585 | 99 | | Plus |
BO17101.complete Sequence
1060 bp assembled on 2006-10-11
GenBank Submission: FJ634024
> BO17101.complete
GAAGTTATCAGTCGACATGCTGGACCTATACAGACGCACGGTGGCGCGGT
TTCCTCTGGGCAGTGTCAGCTATATGTTCGCCTACGGATCCGGCGTCAAA
CAGCAGGAAGGCTATGGAAAAGTCGGCAATGGAAACAACCTGCGTCCTCC
GCCGGGAACCGTTGTGGATCTGGTCTTTTGCGTTCGTGATGCTAGGGGCT
TCCATGCGGAGAACCTGCACCGTCATCCGGACCACTATTCCGCCCTTAGG
CACCTGGGACCGAACTTTGTGGCCAAGTATCAGGAGCGTTTGGGTGCGGG
TGTCTATTGCAACACGTTGGTGCCTCTGCCAGATGTGGGCATTACCATAA
AGTACGGCGTGGTGTCGCAGGAGGAGCTGCTGGAGGATCTGCTTGACTGG
CGGCATCTTTACTTGGCAGGAAGGCTGCACAAACCAGTGACGAATCTGGT
CAATCCTTCTGATAATCCTCCCCTCAAGGCTGCGCTGGAGAGGAATCTTG
TATCCGCGCTGCAAGTGGCTCTGCTACTTTTACCAGAGAAGTTCACTGCC
TACGGACTTTTCCACACCATCGCCGGACTGAGTTACAAGGGCGATTTCCG
TATGATTTTCGGGGAAAACAAACAGAAAGTGCACAACATAGTTAGTCCGC
AAATCAATGACTTCTTCGCCCTATACCAACCCTCCCTGGGACAACTTTCC
GACTATGTGGCGGTAAACATGAAGGGCCAGGAACCAGGGAGCCGGAAACC
AGCCATAATCTTCGAGCAGGACAAATCCTCATCGGCTACATGCCAACACC
TGCGACAGTTGCCCCGAGAGCTTCAGAAGCGATTGCAGCGAAATGCCGCC
TGTCGTGGCGACTACACCCAGGTGGTGAATCACCTATCCATGGCCTCCCA
GCTTCCGGAGGTGCTGCAGGCATCCGTCAACGACATTGTGTGGCGCAGCA
GTGTCACGCAATCGATCAAAAATATTCCCAGTGCTGGCATTCTCAAGTCA
TTGGCGTATAGCTATCGCAAGGCTCAAAAGACATTCGCTGTTGCAAGCTT
TCTAGACCAT
BO17101.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:07:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33331-RA | 1029 | CG33331-PA | 1..1026 | 17..1042 | 5130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:07:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33331-RA | 1284 | CG33331-RA | 127..1152 | 17..1042 | 5130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:07:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14886582..14887607 | 17..1042 | 5130 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:07:35 has no hits.
BO17101.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:54:11 Download gff for
BO17101.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33331-RA | 1..1029 | 17..1043 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:26:26 Download gff for
BO17101.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33331-RA | 101..1135 | 9..1043 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:39:43 Download gff for
BO17101.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33331-RA | 107..1132 | 17..1044 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:54:12 Download gff for
BO17101.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33331-RA | 101..1135 | 9..1043 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:45:10 Download gff for
BO17101.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33331-RA | 127..1152 | 17..1044 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:45:10 Download gff for
BO17101.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14886582..14887607 | 17..1044 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:39:43 Download gff for
BO17101.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10712304..10713329 | 17..1044 | 99 | | Plus |
BO17101.pep Sequence
Translation from 16 to 1060
> BO17101.pep
MLDLYRRTVARFPLGSVSYMFAYGSGVKQQEGYGKVGNGNNLRPPPGTVV
DLVFCVRDARGFHAENLHRHPDHYSALRHLGPNFVAKYQERLGAGVYCNT
LVPLPDVGITIKYGVVSQEELLEDLLDWRHLYLAGRLHKPVTNLVNPSDN
PPLKAALERNLVSALQVALLLLPEKFTAYGLFHTIAGLSYKGDFRMIFGE
NKQKVHNIVSPQINDFFALYQPSLGQLSDYVAVNMKGQEPGSRKPAIIFE
QDKSSSATCQHLRQLPRELQKRLQRNAACRGDYTQVVNHLSMASQLPEVL
QASVNDIVWRSSVTQSIKNIPSAGILKSLAYSYRKAQKTFAVASFLDH
BO17101.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:38:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33331-PA | 342 | CG33331-PA | 1..342 | 1..342 | 1780 | 100 | Plus |
