Clone BO17103 Report

Search the DGRC for BO17103

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:171
Well:3
Vector:pDNR-Dual
Associated Gene/TranscriptCG10630-RA
Protein status:BO17103.pep: validated full length
Sequenced Size:1006

Clone Sequence Records

BO17103.3prime Sequence

781 bp (725 high quality bases) assembled on 2006-10-13

> BO17103.3prime
ATGGTCTAGAAAGCTTGCTTTTTGTGGATAGTCGGTTCCAAATAGTTTGT
TACAAACTAAAGCGGATAGTTTGTAACGGGCTGCCTTCTTGGATGGCCCT
TCAGCATTAAACTCGCAGTTGTCCACACAGACGCTCATGGAGAAAGTATT
ATTCTGGTTTGTACCAGTGCCACCTGAAACTATAAAGGTGCACTGGGGGC
GCATATAGTTAAGAACCATGCAAGGGTGCATATTCTTCCATGTTTCGGGC
AACGGCTTCTTTGGCTCGACAACAGACGTCTGCTTGTTCTTCAAGTCATT
ATACAGGGTTGCGACATCAATATCATCGGTCTTCCATTCCTCACCAAGTT
TGTGAATGGCATAAGAGGCCATCTTTTCGAGTATATCATCCTCATCGCTT
TCCAAGCTCTTTCCTGGCCCGTCCAACACAGCTTTCATTTTGGTGGTTAG
GATTTCCTGCAGTGCCTTCTCGCAAGCTGCATTCCTTGCAGAGTTTACTG
AAGAACCCTCGGCTTCGTATTTCTTTGAGTTAACAACAACGCGAGCCATA
ATCTTTCCCTCGTGGTCTCGTTTTATTTGCATATTGTCGACTGTCACGCC
CTTTAACTCATTCAAAACCATAAGGGCATCCTTGGAGGTCACGGGCATGG
TCAACGGGCGAATTTTTGCCTTTTTATTTTTCTTTTGCTTCTTACGGCCA
TTGGTTGCGTCATCAGTGATAACGTCAGAAGATTTATCATCGGCGATTTT
GTTTTTGGTAACACGCATAGAAGATGTGATT

BO17103.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG10630-PA 975 CG10630-RA 210..972 781..19 3815 100 Minus
CG12493-PA 891 CG12493-RA 377..493 539..423 385 93.1 Minus
CG12493-PA 891 CG12493-RA 254..359 662..557 330 92.4 Minus
CG12493-PA 891 CG12493-RA 847..885 60..22 170 97.4 Minus
CG12493-PA 891 CG12493-RA 518..584 398..332 160 89.5 Minus
CG12493-PA 891 CG12493-RA 669..698 241..212 150 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:58:15
Subject Length Description Subject Range Query Range Score Percent Strand
blanks-RA 1268 CG10630-RA 320..1082 781..19 3815 100 Minus
CG12493-RB 1164 CG12493-RB 370..1001 662..22 1660 84.6 Minus
CG12493-RA 1173 CG12493-RA 379..1010 662..22 1660 84.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:58:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5497709..5498471 19..781 3815 100 Plus
3L 28110227 3L 4752556..4753187 22..662 1555 83.9 Plus
Blast to na_te.dros performed on 2015-02-10 17:58:12 has no hits.

BO17103.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:02:24 Download gff for BO17103.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10630-PA 210..975 15..781 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:43:47 Download gff for BO17103.3prime
Subject Subject Range Query Range Percent Splice Strand
blanks-RA 320..1085 15..781 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:07:17 Download gff for BO17103.3prime
Subject Subject Range Query Range Percent Splice Strand
blanks-RA 320..1085 15..781 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:07:17 Download gff for BO17103.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 5497705..5498471 15..781 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:43:47 Download gff for BO17103.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5490805..5491571 15..781 99   Plus

BO17103.5prime Sequence

881 bp (758 high quality bases) assembled on 2006-10-13

> BO17103.5prime
GAAGTTATCAGTCGACATGGAAGCAAAGCAATTGTTGGCTGAAAGTTGTG
CAAAGGTGGACATCTTAGAGATGAAGAAGGCATTGATCCCAAATCCTTCT
GCCGAAGAGGATGCAGTTGCTGTAATTCCGCTCGCAGATAATTTGAAGAA
AACTGCTATGGGCGGGGAAAATAAAAGCGATGAGAAGGGAACTGTTTCTT
CTGAGCCAAAGGCTCTCAGTGATCAAATCACATCTTCTATGCGTGTTACC
AAAAACAAAATCGCCGATGATAAATCTTCTGACGTTATCACTGATGACGC
AACCAATGGCCGTAAGAAGCAAAAGAAAAATAAAAAGGCAAAAATTCGCC
CGTTGACCATGCCCGTGACCTCCAAGGATGCCCTTATGGTTTTGAATGAG
TTAAAGGGCGTGACAGTCGACAATATGCAAATAAAACGAGACCACGAGGG
AAAGATTATGGCTCGCGTTGTTGTTAACTCAAAGAAATACGAAGCCGAGG
GTTCTTCAGTAAACTCTGCAAGGAATGCAGCTTGCGAGAAGGCACTGCAG
GAAATCCTAACCACCAAAATGAAAGCTGTGTTGGACGGGCCAGGAAAGAG
CTTGGAAAGCGATGAGGATGATATACTCGAAAAGATGGCCTCTTATGCCA
TTCACAAACTTGGTGAGGAATGGAAGACCGATGATATTGATGTCGCAACC
CTGTATAATGACTTGAAGAACAAGCAGACGTCTGTTGTCGAGCCAAAGAA
GCCGTTGCCCGAAACATGGAAGAATATGCACCCTTGCATGGTTCTTAACT
ATATGCGCCCCCAGTGCACCTTTATAGTTTCAGGTGGCACTGGTACAAAC
AAGAATAATACTTTCTCATTGAGCGTCTGTG

BO17103.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG10630-PA 975 CG10630-RA 1..865 17..881 4250 99.6 Plus
CG12493-PA 891 CG12493-RA 377..493 468..584 385 93.1 Plus
CG12493-PA 891 CG12493-RA 254..359 345..450 330 92.4 Plus
CG12493-PA 891 CG12493-RA 518..584 609..675 160 89.5 Plus
CG12493-PA 891 CG12493-RA 669..698 766..795 150 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:17:46
Subject Length Description Subject Range Query Range Score Percent Strand
blanks-RA 1268 CG10630-RA 111..975 17..881 4280 99.7 Plus
CG12493-RB 1164 CG12493-RB 370..863 345..844 1380 85.6 Plus
CG12493-RA 1173 CG12493-RA 379..872 345..844 1380 85.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:17:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5497816..5498561 881..136 3685 99.6 Minus
3L 28110227 3L 4752694..4753187 844..345 1305 85 Minus
3L 28110227 3L 5498728..5498848 137..17 605 100 Minus
Blast to na_te.dros performed on 2015-02-12 11:17:43 has no hits.

BO17103.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:02:24 Download gff for BO17103.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10630-PA 1..865 17..881 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:47:06 Download gff for BO17103.5prime
Subject Subject Range Query Range Percent Splice Strand
blanks-RA 111..975 17..881 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:33:07 Download gff for BO17103.5prime
Subject Subject Range Query Range Percent Splice Strand
blanks-RA 111..975 17..881 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:33:07 Download gff for BO17103.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 5497816..5498559 138..881 99 <- Minus
3L 5498728..5498848 17..137 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:47:06 Download gff for BO17103.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5491828..5491948 17..137 100   Minus
arm_3L 5490916..5491659 138..881 99 <- Minus

BO17103.complete Sequence

1006 bp assembled on 2006-10-11

GenBank Submission: FJ634025

> BO17103.complete
GAAGTTATCAGTCGACATGGAAGCAAAGCAATTGTTGGCTGAAAGTTGTG
CAAAGGTGGACATCTTAGAGATGAAGAAGGCATTGATCCCAAATCCTTCT
GCCGAAGAGGATGCAGTTGCTGTAATTCCGCTCGCAGATAATTTGAAGAA
AACTGCTATGGGCGGGGAAAATAAAAGCGATGAGAAGGGAACTGTTTCTT
CTGAGCCAAAGGCTCTCAGTGATCAAATCACATCTTCTATGCGTGTTACC
AAAAACAAAATCGCCGATGATAAATCTTCTGACGTTATCACTGATGACGC
AACCAATGGCCGTAAGAAGCAAAAGAAAAATAAAAAGGCAAAAATTCGCC
CGTTGACCATGCCCGTGACCTCCAAGGATGCCCTTATGGTTTTGAATGAG
TTAAAGGGCGTGACAGTCGACAATATGCAAATAAAACGAGACCACGAGGG
AAAGATTATGGCTCGCGTTGTTGTTAACTCAAAGAAATACGAAGCCGAGG
GTTCTTCAGTAAACTCTGCAAGGAATGCAGCTTGCGAGAAGGCACTGCAG
GAAATCCTAACCACCAAAATGAAAGCTGTGTTGGACGGGCCAGGAAAGAG
CTTGGAAAGCGATGAGGATGATATACTCGAAAAGATGGCCTCTTATGCCA
TTCACAAACTTGGTGAGGAATGGAAGACCGATGATATTGATGTCGCAACC
CTGTATAATGACTTGAAGAACAAGCAGACGTCTGTTGTCGAGCCAAAGAA
GCCGTTGCCCGAAACATGGAAGAATATGCACCCTTGCATGGTTCTTAACT
ATATGCGCCCCCAGTGCACCTTTATAGTTTCAGGTGGCACTGGTACAAAC
CAGAATAATACTTTCTCCATGAGCGTCTGTGTGGACAACTGCGAGTTTAA
TGCTGAAGGGCCATCCAAGAAGGCAGCCCGTTACAAACTATCCGCTTTAG
TTTGTAACAAACTATTTGGAACCGACTATCCACAAAAAGCAAGCTTTCTA
GACCAT

BO17103.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:33:31
Subject Length Description Subject Range Query Range Score Percent Strand
blanks-RA 975 CG10630-PA 1..972 17..988 4860 100 Plus
CG12493-RB 882 CG12493-PB 245..876 345..985 1555 83.9 Plus
CG12493-RA 891 CG12493-PA 254..885 345..985 1555 83.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:33:32
Subject Length Description Subject Range Query Range Score Percent Strand
blanks-RA 1268 CG10630-RA 111..1082 17..988 4860 100 Plus
CG12493-RB 1164 CG12493-RB 370..1001 345..985 1555 83.9 Plus
CG12493-RA 1173 CG12493-RA 379..1010 345..985 1555 83.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:33:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5497709..5498561 988..136 4265 100 Minus
3L 28110227 3L 4752556..4753187 985..345 1555 83.9 Minus
3L 28110227 3L 5498728..5498848 137..17 605 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:33:30 has no hits.

BO17103.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:25:28 Download gff for BO17103.complete
Subject Subject Range Query Range Percent Splice Strand
CG10630-RA 1..975 17..992 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:45:46 Download gff for BO17103.complete
Subject Subject Range Query Range Percent Splice Strand
CG10630-RA 83..1057 17..992 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:30:12 Download gff for BO17103.complete
Subject Subject Range Query Range Percent Splice Strand
blanks-RA 111..1077 17..983 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:25:29 Download gff for BO17103.complete
Subject Subject Range Query Range Percent Splice Strand
CG10630-RA 83..1057 17..992 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:48:04 Download gff for BO17103.complete
Subject Subject Range Query Range Percent Splice Strand
blanks-RA 111..1077 17..983 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:48:04 Download gff for BO17103.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5497714..5498559 138..983 100 <- Minus
3L 5498728..5498848 17..137 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:30:12 Download gff for BO17103.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5490814..5491659 138..983 100 <- Minus
arm_3L 5491828..5491948 17..137 100   Minus

BO17103.pep Sequence

Translation from 16 to 1006

> BO17103.pep
MEAKQLLAESCAKVDILEMKKALIPNPSAEEDAVAVIPLADNLKKTAMGG
ENKSDEKGTVSSEPKALSDQITSSMRVTKNKIADDKSSDVITDDATNGRK
KQKKNKKAKIRPLTMPVTSKDALMVLNELKGVTVDNMQIKRDHEGKIMAR
VVVNSKKYEAEGSSVNSARNAACEKALQEILTTKMKAVLDGPGKSLESDE
DDILEKMASYAIHKLGEEWKTDDIDVATLYNDLKNKQTSVVEPKKPLPET
WKNMHPCMVLNYMRPQCTFIVSGGTGTNQNNTFSMSVCVDNCEFNAEGPS
KKAARYKLSALVCNKLFGTDYPQKASFLDH

BO17103.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:01:11
Subject Length Description Subject Range Query Range Score Percent Strand
blanks-PA 324 CG10630-PA 1..324 1..324 1659 100 Plus
CG12493-PA 296 CG12493-PA 5..295 18..323 795 56.4 Plus
CG12493-PB 293 CG12493-PB 5..292 18..323 791 56.4 Plus
DIP1-PH 309 CG17686-PH 7..303 55..321 353 31 Plus
DIP1-PI 378 CG17686-PI 76..372 55..321 353 31 Plus