Clone Sequence Records
BO17103.3prime Sequence
781 bp (725 high quality bases) assembled on 2006-10-13
> BO17103.3prime
ATGGTCTAGAAAGCTTGCTTTTTGTGGATAGTCGGTTCCAAATAGTTTGT
TACAAACTAAAGCGGATAGTTTGTAACGGGCTGCCTTCTTGGATGGCCCT
TCAGCATTAAACTCGCAGTTGTCCACACAGACGCTCATGGAGAAAGTATT
ATTCTGGTTTGTACCAGTGCCACCTGAAACTATAAAGGTGCACTGGGGGC
GCATATAGTTAAGAACCATGCAAGGGTGCATATTCTTCCATGTTTCGGGC
AACGGCTTCTTTGGCTCGACAACAGACGTCTGCTTGTTCTTCAAGTCATT
ATACAGGGTTGCGACATCAATATCATCGGTCTTCCATTCCTCACCAAGTT
TGTGAATGGCATAAGAGGCCATCTTTTCGAGTATATCATCCTCATCGCTT
TCCAAGCTCTTTCCTGGCCCGTCCAACACAGCTTTCATTTTGGTGGTTAG
GATTTCCTGCAGTGCCTTCTCGCAAGCTGCATTCCTTGCAGAGTTTACTG
AAGAACCCTCGGCTTCGTATTTCTTTGAGTTAACAACAACGCGAGCCATA
ATCTTTCCCTCGTGGTCTCGTTTTATTTGCATATTGTCGACTGTCACGCC
CTTTAACTCATTCAAAACCATAAGGGCATCCTTGGAGGTCACGGGCATGG
TCAACGGGCGAATTTTTGCCTTTTTATTTTTCTTTTGCTTCTTACGGCCA
TTGGTTGCGTCATCAGTGATAACGTCAGAAGATTTATCATCGGCGATTTT
GTTTTTGGTAACACGCATAGAAGATGTGATT
BO17103.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10630-PA | 975 | CG10630-RA | 210..972 | 781..19 | 3815 | 100 | Minus |
CG12493-PA | 891 | CG12493-RA | 377..493 | 539..423 | 385 | 93.1 | Minus |
CG12493-PA | 891 | CG12493-RA | 254..359 | 662..557 | 330 | 92.4 | Minus |
CG12493-PA | 891 | CG12493-RA | 847..885 | 60..22 | 170 | 97.4 | Minus |
CG12493-PA | 891 | CG12493-RA | 518..584 | 398..332 | 160 | 89.5 | Minus |
CG12493-PA | 891 | CG12493-RA | 669..698 | 241..212 | 150 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:58:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
blanks-RA | 1268 | CG10630-RA | 320..1082 | 781..19 | 3815 | 100 | Minus |
CG12493-RB | 1164 | CG12493-RB | 370..1001 | 662..22 | 1660 | 84.6 | Minus |
CG12493-RA | 1173 | CG12493-RA | 379..1010 | 662..22 | 1660 | 84.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:58:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5497709..5498471 | 19..781 | 3815 | 100 | Plus |
3L | 28110227 | 3L | 4752556..4753187 | 22..662 | 1555 | 83.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:58:12 has no hits.
BO17103.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:02:24 Download gff for
BO17103.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10630-PA | 210..975 | 15..781 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:43:47 Download gff for
BO17103.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
blanks-RA | 320..1085 | 15..781 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:07:17 Download gff for
BO17103.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
blanks-RA | 320..1085 | 15..781 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:07:17 Download gff for
BO17103.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5497705..5498471 | 15..781 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:43:47 Download gff for
BO17103.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5490805..5491571 | 15..781 | 99 | | Plus |
BO17103.5prime Sequence
881 bp (758 high quality bases) assembled on 2006-10-13
> BO17103.5prime
GAAGTTATCAGTCGACATGGAAGCAAAGCAATTGTTGGCTGAAAGTTGTG
CAAAGGTGGACATCTTAGAGATGAAGAAGGCATTGATCCCAAATCCTTCT
GCCGAAGAGGATGCAGTTGCTGTAATTCCGCTCGCAGATAATTTGAAGAA
AACTGCTATGGGCGGGGAAAATAAAAGCGATGAGAAGGGAACTGTTTCTT
CTGAGCCAAAGGCTCTCAGTGATCAAATCACATCTTCTATGCGTGTTACC
AAAAACAAAATCGCCGATGATAAATCTTCTGACGTTATCACTGATGACGC
AACCAATGGCCGTAAGAAGCAAAAGAAAAATAAAAAGGCAAAAATTCGCC
CGTTGACCATGCCCGTGACCTCCAAGGATGCCCTTATGGTTTTGAATGAG
TTAAAGGGCGTGACAGTCGACAATATGCAAATAAAACGAGACCACGAGGG
AAAGATTATGGCTCGCGTTGTTGTTAACTCAAAGAAATACGAAGCCGAGG
GTTCTTCAGTAAACTCTGCAAGGAATGCAGCTTGCGAGAAGGCACTGCAG
GAAATCCTAACCACCAAAATGAAAGCTGTGTTGGACGGGCCAGGAAAGAG
CTTGGAAAGCGATGAGGATGATATACTCGAAAAGATGGCCTCTTATGCCA
TTCACAAACTTGGTGAGGAATGGAAGACCGATGATATTGATGTCGCAACC
CTGTATAATGACTTGAAGAACAAGCAGACGTCTGTTGTCGAGCCAAAGAA
GCCGTTGCCCGAAACATGGAAGAATATGCACCCTTGCATGGTTCTTAACT
ATATGCGCCCCCAGTGCACCTTTATAGTTTCAGGTGGCACTGGTACAAAC
AAGAATAATACTTTCTCATTGAGCGTCTGTG
BO17103.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10630-PA | 975 | CG10630-RA | 1..865 | 17..881 | 4250 | 99.6 | Plus |
CG12493-PA | 891 | CG12493-RA | 377..493 | 468..584 | 385 | 93.1 | Plus |
CG12493-PA | 891 | CG12493-RA | 254..359 | 345..450 | 330 | 92.4 | Plus |
CG12493-PA | 891 | CG12493-RA | 518..584 | 609..675 | 160 | 89.5 | Plus |
CG12493-PA | 891 | CG12493-RA | 669..698 | 766..795 | 150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:17:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
blanks-RA | 1268 | CG10630-RA | 111..975 | 17..881 | 4280 | 99.7 | Plus |
CG12493-RB | 1164 | CG12493-RB | 370..863 | 345..844 | 1380 | 85.6 | Plus |
CG12493-RA | 1173 | CG12493-RA | 379..872 | 345..844 | 1380 | 85.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:17:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5497816..5498561 | 881..136 | 3685 | 99.6 | Minus |
3L | 28110227 | 3L | 4752694..4753187 | 844..345 | 1305 | 85 | Minus |
3L | 28110227 | 3L | 5498728..5498848 | 137..17 | 605 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:17:43 has no hits.
BO17103.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:02:24 Download gff for
BO17103.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10630-PA | 1..865 | 17..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:47:06 Download gff for
BO17103.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
blanks-RA | 111..975 | 17..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:33:07 Download gff for
BO17103.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
blanks-RA | 111..975 | 17..881 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:33:07 Download gff for
BO17103.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5497816..5498559 | 138..881 | 99 | <- | Minus |
3L | 5498728..5498848 | 17..137 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:47:06 Download gff for
BO17103.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5491828..5491948 | 17..137 | 100 | | Minus |
arm_3L | 5490916..5491659 | 138..881 | 99 | <- | Minus |
BO17103.complete Sequence
1006 bp assembled on 2006-10-11
GenBank Submission: FJ634025
> BO17103.complete
GAAGTTATCAGTCGACATGGAAGCAAAGCAATTGTTGGCTGAAAGTTGTG
CAAAGGTGGACATCTTAGAGATGAAGAAGGCATTGATCCCAAATCCTTCT
GCCGAAGAGGATGCAGTTGCTGTAATTCCGCTCGCAGATAATTTGAAGAA
AACTGCTATGGGCGGGGAAAATAAAAGCGATGAGAAGGGAACTGTTTCTT
CTGAGCCAAAGGCTCTCAGTGATCAAATCACATCTTCTATGCGTGTTACC
AAAAACAAAATCGCCGATGATAAATCTTCTGACGTTATCACTGATGACGC
AACCAATGGCCGTAAGAAGCAAAAGAAAAATAAAAAGGCAAAAATTCGCC
CGTTGACCATGCCCGTGACCTCCAAGGATGCCCTTATGGTTTTGAATGAG
TTAAAGGGCGTGACAGTCGACAATATGCAAATAAAACGAGACCACGAGGG
AAAGATTATGGCTCGCGTTGTTGTTAACTCAAAGAAATACGAAGCCGAGG
GTTCTTCAGTAAACTCTGCAAGGAATGCAGCTTGCGAGAAGGCACTGCAG
GAAATCCTAACCACCAAAATGAAAGCTGTGTTGGACGGGCCAGGAAAGAG
CTTGGAAAGCGATGAGGATGATATACTCGAAAAGATGGCCTCTTATGCCA
TTCACAAACTTGGTGAGGAATGGAAGACCGATGATATTGATGTCGCAACC
CTGTATAATGACTTGAAGAACAAGCAGACGTCTGTTGTCGAGCCAAAGAA
GCCGTTGCCCGAAACATGGAAGAATATGCACCCTTGCATGGTTCTTAACT
ATATGCGCCCCCAGTGCACCTTTATAGTTTCAGGTGGCACTGGTACAAAC
CAGAATAATACTTTCTCCATGAGCGTCTGTGTGGACAACTGCGAGTTTAA
TGCTGAAGGGCCATCCAAGAAGGCAGCCCGTTACAAACTATCCGCTTTAG
TTTGTAACAAACTATTTGGAACCGACTATCCACAAAAAGCAAGCTTTCTA
GACCAT
BO17103.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:33:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
blanks-RA | 975 | CG10630-PA | 1..972 | 17..988 | 4860 | 100 | Plus |
CG12493-RB | 882 | CG12493-PB | 245..876 | 345..985 | 1555 | 83.9 | Plus |
CG12493-RA | 891 | CG12493-PA | 254..885 | 345..985 | 1555 | 83.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:33:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
blanks-RA | 1268 | CG10630-RA | 111..1082 | 17..988 | 4860 | 100 | Plus |
CG12493-RB | 1164 | CG12493-RB | 370..1001 | 345..985 | 1555 | 83.9 | Plus |
CG12493-RA | 1173 | CG12493-RA | 379..1010 | 345..985 | 1555 | 83.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:33:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5497709..5498561 | 988..136 | 4265 | 100 | Minus |
3L | 28110227 | 3L | 4752556..4753187 | 985..345 | 1555 | 83.9 | Minus |
3L | 28110227 | 3L | 5498728..5498848 | 137..17 | 605 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:33:30 has no hits.
BO17103.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:25:28 Download gff for
BO17103.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10630-RA | 1..975 | 17..992 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:45:46 Download gff for
BO17103.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10630-RA | 83..1057 | 17..992 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:30:12 Download gff for
BO17103.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
blanks-RA | 111..1077 | 17..983 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:25:29 Download gff for
BO17103.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10630-RA | 83..1057 | 17..992 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:48:04 Download gff for
BO17103.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
blanks-RA | 111..1077 | 17..983 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:48:04 Download gff for
BO17103.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5497714..5498559 | 138..983 | 100 | <- | Minus |
3L | 5498728..5498848 | 17..137 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:30:12 Download gff for
BO17103.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5490814..5491659 | 138..983 | 100 | <- | Minus |
arm_3L | 5491828..5491948 | 17..137 | 100 | | Minus |
BO17103.pep Sequence
Translation from 16 to 1006
> BO17103.pep
MEAKQLLAESCAKVDILEMKKALIPNPSAEEDAVAVIPLADNLKKTAMGG
ENKSDEKGTVSSEPKALSDQITSSMRVTKNKIADDKSSDVITDDATNGRK
KQKKNKKAKIRPLTMPVTSKDALMVLNELKGVTVDNMQIKRDHEGKIMAR
VVVNSKKYEAEGSSVNSARNAACEKALQEILTTKMKAVLDGPGKSLESDE
DDILEKMASYAIHKLGEEWKTDDIDVATLYNDLKNKQTSVVEPKKPLPET
WKNMHPCMVLNYMRPQCTFIVSGGTGTNQNNTFSMSVCVDNCEFNAEGPS
KKAARYKLSALVCNKLFGTDYPQKASFLDH
BO17103.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:01:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
blanks-PA | 324 | CG10630-PA | 1..324 | 1..324 | 1659 | 100 | Plus |
CG12493-PA | 296 | CG12493-PA | 5..295 | 18..323 | 795 | 56.4 | Plus |
CG12493-PB | 293 | CG12493-PB | 5..292 | 18..323 | 791 | 56.4 | Plus |
DIP1-PH | 309 | CG17686-PH | 7..303 | 55..321 | 353 | 31 | Plus |
DIP1-PI | 378 | CG17686-PI | 76..372 | 55..321 | 353 | 31 | Plus |