Clone BO17106 Report

Search the DGRC for BO17106

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:171
Well:6
Vector:pDNR-Dual
Associated Gene/Transcriptash2-RB
Protein status:BO17106.pep: validated full length
Sequenced Size:1084

Clone Sequence Records

BO17106.5prime Sequence

627 bp (523 high quality bases) assembled on 2006-10-13

> BO17106.5prime
GAAGTTATCAGTCGACATGGCGTCATCTTTTACGGACGAGGAGTCTTCCC
TCTCCAAAAACAATCGACAGAAAAGGAAATTTCCCGGCACGGATTCGGGT
CCCACGGGCAAGAAGGGTCGGCCCAGTTCCGATATTACGGCCAATGTAAA
GTTGCCACCGCATGGCTATCCATTGGAACACCCCTTCAACAAGGATGGCT
ATCGTTATATACTCGCCGAACCGGATCCACATGCTCCATTTCGTCAGGAG
TTCGACGAGAGCTCCGATTGGGCTGGCAAACCTATCCCCGGCTGGCTCTA
CCGCATCCTGGTGCCACATTCTGTGCTCCTGGCGCTGCATGATCGGGCAC
CACAGCTGAAAATAAGCGAGGATCGGTTGGCGGTGACGGGCGAACGTGGT
TACTGCATGGTCCGAGCCACACACTCTGTGAACCGGGGATGCTGGTACTT
TGAGGTCACCATCGAAGAGATGCCCGACGGAGCTGCCACGCGACTTGGCT
GGGGCCGGGAGTACGGCAACTTGCAGGCTCCATTGGGATACGACAAGTTC
GGTTACTCCTGGAGATCTCGCAAGGGCACCAAGTTTACCGAGAGCCATGG
CAAACACTACAGTGATGCCTATGTGGA

BO17106.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG6677-PB 1053 ash2-RB 1..611 17..627 3055 100 Plus
CG6677-PA 1872 ash2-RA 848..1430 45..627 2915 100 Plus
CG6677-PC 1671 ash2-RC 647..1229 45..627 2915 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:34:27
Subject Length Description Subject Range Query Range Score Percent Strand
ash2-RB 1413 CG6677-RB 187..797 17..627 3055 100 Plus
ash2-RE 1271 CG6677-RE 73..655 45..627 2915 100 Plus
ash2-RC 1949 CG6677-RC 751..1333 45..627 2915 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:34:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24651861..24652241 45..425 1905 100 Plus
3R 32079331 3R 24652310..24652511 426..627 1010 100 Plus
Blast to na_te.dros performed on 2015-02-10 16:34:22 has no hits.

BO17106.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:02:32 Download gff for BO17106.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6677-PB 1..610 17..626 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:14:40 Download gff for BO17106.5prime
Subject Subject Range Query Range Percent Splice Strand
ash2-RB 181..796 8..626 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:48:15 Download gff for BO17106.5prime
Subject Subject Range Query Range Percent Splice Strand
ash2-RB 181..796 8..626 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:48:15 Download gff for BO17106.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 24651861..24652241 45..425 100 -> Plus
3R 24652310..24652510 426..626 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:14:40 Download gff for BO17106.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20477583..20477963 45..425 100 -> Plus
arm_3R 20478032..20478232 426..626 100   Plus

BO17106.3prime Sequence

564 bp (561 high quality bases) assembled on 2006-10-13

> BO17106.3prime
ATGGTCTAGAAAGCTTGCAAGACCCATATTATCCAAGCGCAGACGTCCAT
CGTGTTCTGTGAGGTAGAGGGTGTCGGCTAAACATTGCTCTGTGATCAGC
TCCTCCACGCGATCGTGCATCCCCTTGGCTTTGTGCTCGACGAGCACCTC
GGGATACTTGAAGGCGGGTCCGAAGTTTACGCTGACCGTTGCACTTTTGT
GGATCGAGATGGCCGGGAAATAGCTGCCGGCATAAATGTCTTCGAATGCC
ACACCCTGCGATTGACCGTTCTTAAAGAACTCGATGCGGCTGCCCTGCAG
GATGTGCAGATTTTTCAGGGTTTCTGTGATCTTGTCCTTATCCTCGTAGT
ACAGATGAGACTTGAACTTGACCAGGGGCCGATCTTTGAATGTGTTGGGC
AGATAGTCGAGCGACGCCTCCTCTGGCAGCTCTATGAGGAATCCCAATGT
ATCGCCCTCCACATAGGCATCACTGTAGTGTTTGCCATGGCTCTCGGTAA
ACTTGGTGCCCTTGCGAGATCTCCAGGAGTAACCGAACTTGTCGTATCCC
AATGGAGCCTGCAA

BO17106.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG6677-PA 1872 ash2-RA 1324..1869 564..19 2730 100 Minus
CG6677-PB 1053 ash2-RB 505..1050 564..19 2730 100 Minus
CG6677-PC 1671 ash2-RC 1123..1668 564..19 2730 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:59:39
Subject Length Description Subject Range Query Range Score Percent Strand
ash2-RE 1271 CG6677-RE 549..1094 564..19 2730 100 Minus
ash2-RC 1949 CG6677-RC 1227..1772 564..19 2730 100 Minus
ash2-RB 1413 CG6677-RB 691..1236 564..19 2730 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:59:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24652781..24653039 379..121 1295 100 Minus
3R 32079331 3R 24652405..24652590 564..379 930 100 Minus
3R 32079331 3R 24653097..24653199 121..19 515 100 Minus
Blast to na_te.dros performed 2015-02-12 03:59:38
Subject Length Description Subject Range Query Range Score Percent Strand
G5 4856 G5 G5_DM 4856bp 655..695 215..175 106 73.2 Minus

BO17106.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:02:31 Download gff for BO17106.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6677-PC 1125..1671 18..562 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:33:19 Download gff for BO17106.3prime
Subject Subject Range Query Range Percent Splice Strand
ash2-RB 693..1236 19..562 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:58:49 Download gff for BO17106.3prime
Subject Subject Range Query Range Percent Splice Strand
ash2-RB 693..1236 19..562 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:58:49 Download gff for BO17106.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 24652407..24652590 379..562 100 -> Minus
3R 24652782..24653039 121..378 100 -> Minus
3R 24653098..24653199 19..120 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:33:19 Download gff for BO17106.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20478129..20478312 379..562 100 -> Minus
arm_3R 20478504..20478761 121..378 100 -> Minus
arm_3R 20478820..20478921 19..120 100   Minus

BO17106.complete Sequence

1084 bp assembled on 2006-10-11

GenBank Submission: FJ634026

> BO17106.complete
GAAGTTATCAGTCGACATGGCGTCATCTTTTACGGACGAGGAGTCTTCCC
TCTCCAAAAACAATCGACAGAAAAGGAAATTTCCCGGCACGGATTCGGGT
CCCACGGGCAAGAAGGGTCGGCCCAGTTCCGATATTACGGCCAATGTAAA
GTTGCCACCGCATGGCTATCCATTGGAACACCCCTTCAACAAGGATGGCT
ATCGTTATATACTCGCCGAACCGGATCCACATGCTCCATTTCGTCAGGAG
TTCGACGAGAGCTCCGATTGGGCTGGCAAACCTATCCCCGGCTGGCTCTA
CCGCATCCTGGTGCCACATTCTGTGCTCCTGGCGCTGCATGATCGGGCAC
CACAGCTGAAAATAAGCGAGGATCGGTTGGCGGTGACGGGCGAACGTGGT
TACTGCATGGTCCGAGCCACACACTCTGTGAACCGGGGATGCTGGTACTT
TGAGGTCACCATCGAAGAGATGCCCGACGGAGCTGCCACGCGACTTGGCT
GGGGCCGGGAGTACGGCAACTTGCAGGCTCCATTGGGATACGACAAGTTC
GGTTACTCCTGGAGATCTCGCAAGGGCACCAAGTTTACCGAGAGCCATGG
CAAACACTACAGTGATGCCTATGTGGAGGGCGATACATTGGGATTCCTCA
TAGAGCTGCCAGAGGAGGCGTCGCTCGACTATCTGCCCAACACATTCAAA
GATCGGCCCCTGGTCAAGTTCAAGTCTCATCTGTACTACGAGGATAAGGA
CAAGATCACAGAAACCCTGAAAAATCTGCACATCCTGCAGGGCAGCCGCA
TCGAGTTCTTTAAGAACGGTCAATCGCAGGGTGTGGCATTCGAAGACATT
TATGCCGGCAGCTATTTCCCGGCCATCTCGATCCACAAAAGTGCAACGGT
CAGCGTAAACTTCGGACCCGCCTTCAAGTATCCCGAGGTGCTCGTCGAGC
ACAAAGCCAAGGGGATGCACGATCGCGTGGAGGAGCTGATCACAGAGCAA
TGTTTAGCCGACACCCTCTACCTCACAGAACACGATGGACGTCTGCGCTT
GGATAATATGGGTCTTGCAAGCTTTCTAGACCAT

BO17106.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:06:31
Subject Length Description Subject Range Query Range Score Percent Strand
ash2-RB 1053 CG6677-PB 1..1050 17..1066 5250 100 Plus
ash2-RC 1671 CG6677-PC 647..1668 45..1066 5110 100 Plus
ash2-RE 663 CG6677-PE 1..660 407..1066 3300 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:06:32
Subject Length Description Subject Range Query Range Score Percent Strand
ash2-RB 1413 CG6677-RB 187..1236 17..1066 5250 100 Plus
ash2-RE 1271 CG6677-RE 73..1094 45..1066 5110 100 Plus
ash2-RC 1949 CG6677-RC 751..1772 45..1066 5110 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:06:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24651861..24652241 45..425 1905 100 Plus
3R 32079331 3R 24652310..24652590 426..706 1405 100 Plus
3R 32079331 3R 24652781..24653039 706..964 1295 100 Plus
3R 32079331 3R 24653097..24653199 964..1066 515 100 Plus
Blast to na_te.dros performed on 2014-11-27 11:06:30 has no hits.

BO17106.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:25:01 Download gff for BO17106.complete
Subject Subject Range Query Range Percent Splice Strand
ash2-RB 1..1053 17..1067 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:45:25 Download gff for BO17106.complete
Subject Subject Range Query Range Percent Splice Strand
ash2-RB 71..1126 8..1066 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:19:46 Download gff for BO17106.complete
Subject Subject Range Query Range Percent Splice Strand
ash2-RB 187..1236 17..1068 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:25:01 Download gff for BO17106.complete
Subject Subject Range Query Range Percent Splice Strand
ash2-RB 71..1126 8..1066 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:38:56 Download gff for BO17106.complete
Subject Subject Range Query Range Percent Splice Strand
ash2-RB 187..1236 17..1068 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:38:56 Download gff for BO17106.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24651603..24651630 17..44 100 -> Plus
3R 24651861..24652241 45..425 100 -> Plus
3R 24652310..24652590 426..706 100 -> Plus
3R 24652782..24653039 707..964 100 -> Plus
3R 24653098..24653199 965..1068 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:19:46 Download gff for BO17106.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20477325..20477352 17..44 100 -> Plus
arm_3R 20477583..20477963 45..425 100 -> Plus
arm_3R 20478032..20478312 426..706 100 -> Plus
arm_3R 20478504..20478761 707..964 100 -> Plus
arm_3R 20478820..20478921 965..1068 98   Plus

BO17106.pep Sequence

Translation from 16 to 1084

> BO17106.pep
MASSFTDEESSLSKNNRQKRKFPGTDSGPTGKKGRPSSDITANVKLPPHG
YPLEHPFNKDGYRYILAEPDPHAPFRQEFDESSDWAGKPIPGWLYRILVP
HSVLLALHDRAPQLKISEDRLAVTGERGYCMVRATHSVNRGCWYFEVTIE
EMPDGAATRLGWGREYGNLQAPLGYDKFGYSWRSRKGTKFTESHGKHYSD
AYVEGDTLGFLIELPEEASLDYLPNTFKDRPLVKFKSHLYYEDKDKITET
LKNLHILQGSRIEFFKNGQSQGVAFEDIYAGSYFPAISIHKSATVSVNFG
PAFKYPEVLVEHKAKGMHDRVEELITEQCLADTLYLTEHDGRLRLDNMGL
ASFLDH

BO17106.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:01:41
Subject Length Description Subject Range Query Range Score Percent Strand
ash2-PB 350 CG6677-PB 1..350 1..350 1886 100 Plus
ash2-PC 556 CG6677-PC 215..556 9..350 1841 99.4 Plus
ash2-PE 220 CG6677-PE 1..220 131..350 1179 100 Plus