Clone Sequence Records
BO17106.5prime Sequence
627 bp (523 high quality bases) assembled on 2006-10-13
> BO17106.5prime
GAAGTTATCAGTCGACATGGCGTCATCTTTTACGGACGAGGAGTCTTCCC
TCTCCAAAAACAATCGACAGAAAAGGAAATTTCCCGGCACGGATTCGGGT
CCCACGGGCAAGAAGGGTCGGCCCAGTTCCGATATTACGGCCAATGTAAA
GTTGCCACCGCATGGCTATCCATTGGAACACCCCTTCAACAAGGATGGCT
ATCGTTATATACTCGCCGAACCGGATCCACATGCTCCATTTCGTCAGGAG
TTCGACGAGAGCTCCGATTGGGCTGGCAAACCTATCCCCGGCTGGCTCTA
CCGCATCCTGGTGCCACATTCTGTGCTCCTGGCGCTGCATGATCGGGCAC
CACAGCTGAAAATAAGCGAGGATCGGTTGGCGGTGACGGGCGAACGTGGT
TACTGCATGGTCCGAGCCACACACTCTGTGAACCGGGGATGCTGGTACTT
TGAGGTCACCATCGAAGAGATGCCCGACGGAGCTGCCACGCGACTTGGCT
GGGGCCGGGAGTACGGCAACTTGCAGGCTCCATTGGGATACGACAAGTTC
GGTTACTCCTGGAGATCTCGCAAGGGCACCAAGTTTACCGAGAGCCATGG
CAAACACTACAGTGATGCCTATGTGGA
BO17106.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6677-PB | 1053 | ash2-RB | 1..611 | 17..627 | 3055 | 100 | Plus |
CG6677-PA | 1872 | ash2-RA | 848..1430 | 45..627 | 2915 | 100 | Plus |
CG6677-PC | 1671 | ash2-RC | 647..1229 | 45..627 | 2915 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:34:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ash2-RB | 1413 | CG6677-RB | 187..797 | 17..627 | 3055 | 100 | Plus |
ash2-RE | 1271 | CG6677-RE | 73..655 | 45..627 | 2915 | 100 | Plus |
ash2-RC | 1949 | CG6677-RC | 751..1333 | 45..627 | 2915 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:34:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24651861..24652241 | 45..425 | 1905 | 100 | Plus |
3R | 32079331 | 3R | 24652310..24652511 | 426..627 | 1010 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:34:22 has no hits.
BO17106.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:02:32 Download gff for
BO17106.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6677-PB | 1..610 | 17..626 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:14:40 Download gff for
BO17106.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ash2-RB | 181..796 | 8..626 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:48:15 Download gff for
BO17106.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ash2-RB | 181..796 | 8..626 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:48:15 Download gff for
BO17106.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24651861..24652241 | 45..425 | 100 | -> | Plus |
3R | 24652310..24652510 | 426..626 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:14:40 Download gff for
BO17106.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20477583..20477963 | 45..425 | 100 | -> | Plus |
arm_3R | 20478032..20478232 | 426..626 | 100 | | Plus |
BO17106.3prime Sequence
564 bp (561 high quality bases) assembled on 2006-10-13
> BO17106.3prime
ATGGTCTAGAAAGCTTGCAAGACCCATATTATCCAAGCGCAGACGTCCAT
CGTGTTCTGTGAGGTAGAGGGTGTCGGCTAAACATTGCTCTGTGATCAGC
TCCTCCACGCGATCGTGCATCCCCTTGGCTTTGTGCTCGACGAGCACCTC
GGGATACTTGAAGGCGGGTCCGAAGTTTACGCTGACCGTTGCACTTTTGT
GGATCGAGATGGCCGGGAAATAGCTGCCGGCATAAATGTCTTCGAATGCC
ACACCCTGCGATTGACCGTTCTTAAAGAACTCGATGCGGCTGCCCTGCAG
GATGTGCAGATTTTTCAGGGTTTCTGTGATCTTGTCCTTATCCTCGTAGT
ACAGATGAGACTTGAACTTGACCAGGGGCCGATCTTTGAATGTGTTGGGC
AGATAGTCGAGCGACGCCTCCTCTGGCAGCTCTATGAGGAATCCCAATGT
ATCGCCCTCCACATAGGCATCACTGTAGTGTTTGCCATGGCTCTCGGTAA
ACTTGGTGCCCTTGCGAGATCTCCAGGAGTAACCGAACTTGTCGTATCCC
AATGGAGCCTGCAA
BO17106.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6677-PA | 1872 | ash2-RA | 1324..1869 | 564..19 | 2730 | 100 | Minus |
CG6677-PB | 1053 | ash2-RB | 505..1050 | 564..19 | 2730 | 100 | Minus |
CG6677-PC | 1671 | ash2-RC | 1123..1668 | 564..19 | 2730 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:59:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ash2-RE | 1271 | CG6677-RE | 549..1094 | 564..19 | 2730 | 100 | Minus |
ash2-RC | 1949 | CG6677-RC | 1227..1772 | 564..19 | 2730 | 100 | Minus |
ash2-RB | 1413 | CG6677-RB | 691..1236 | 564..19 | 2730 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:59:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24652781..24653039 | 379..121 | 1295 | 100 | Minus |
3R | 32079331 | 3R | 24652405..24652590 | 564..379 | 930 | 100 | Minus |
3R | 32079331 | 3R | 24653097..24653199 | 121..19 | 515 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 03:59:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G5 | 4856 | G5 G5_DM 4856bp | 655..695 | 215..175 | 106 | 73.2 | Minus |
BO17106.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:02:31 Download gff for
BO17106.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6677-PC | 1125..1671 | 18..562 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:33:19 Download gff for
BO17106.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ash2-RB | 693..1236 | 19..562 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:58:49 Download gff for
BO17106.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ash2-RB | 693..1236 | 19..562 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:58:49 Download gff for
BO17106.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24652407..24652590 | 379..562 | 100 | -> | Minus |
3R | 24652782..24653039 | 121..378 | 100 | -> | Minus |
3R | 24653098..24653199 | 19..120 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:33:19 Download gff for
BO17106.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20478129..20478312 | 379..562 | 100 | -> | Minus |
arm_3R | 20478504..20478761 | 121..378 | 100 | -> | Minus |
arm_3R | 20478820..20478921 | 19..120 | 100 | | Minus |
BO17106.complete Sequence
1084 bp assembled on 2006-10-11
GenBank Submission: FJ634026
> BO17106.complete
GAAGTTATCAGTCGACATGGCGTCATCTTTTACGGACGAGGAGTCTTCCC
TCTCCAAAAACAATCGACAGAAAAGGAAATTTCCCGGCACGGATTCGGGT
CCCACGGGCAAGAAGGGTCGGCCCAGTTCCGATATTACGGCCAATGTAAA
GTTGCCACCGCATGGCTATCCATTGGAACACCCCTTCAACAAGGATGGCT
ATCGTTATATACTCGCCGAACCGGATCCACATGCTCCATTTCGTCAGGAG
TTCGACGAGAGCTCCGATTGGGCTGGCAAACCTATCCCCGGCTGGCTCTA
CCGCATCCTGGTGCCACATTCTGTGCTCCTGGCGCTGCATGATCGGGCAC
CACAGCTGAAAATAAGCGAGGATCGGTTGGCGGTGACGGGCGAACGTGGT
TACTGCATGGTCCGAGCCACACACTCTGTGAACCGGGGATGCTGGTACTT
TGAGGTCACCATCGAAGAGATGCCCGACGGAGCTGCCACGCGACTTGGCT
GGGGCCGGGAGTACGGCAACTTGCAGGCTCCATTGGGATACGACAAGTTC
GGTTACTCCTGGAGATCTCGCAAGGGCACCAAGTTTACCGAGAGCCATGG
CAAACACTACAGTGATGCCTATGTGGAGGGCGATACATTGGGATTCCTCA
TAGAGCTGCCAGAGGAGGCGTCGCTCGACTATCTGCCCAACACATTCAAA
GATCGGCCCCTGGTCAAGTTCAAGTCTCATCTGTACTACGAGGATAAGGA
CAAGATCACAGAAACCCTGAAAAATCTGCACATCCTGCAGGGCAGCCGCA
TCGAGTTCTTTAAGAACGGTCAATCGCAGGGTGTGGCATTCGAAGACATT
TATGCCGGCAGCTATTTCCCGGCCATCTCGATCCACAAAAGTGCAACGGT
CAGCGTAAACTTCGGACCCGCCTTCAAGTATCCCGAGGTGCTCGTCGAGC
ACAAAGCCAAGGGGATGCACGATCGCGTGGAGGAGCTGATCACAGAGCAA
TGTTTAGCCGACACCCTCTACCTCACAGAACACGATGGACGTCTGCGCTT
GGATAATATGGGTCTTGCAAGCTTTCTAGACCAT
BO17106.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:06:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ash2-RB | 1053 | CG6677-PB | 1..1050 | 17..1066 | 5250 | 100 | Plus |
ash2-RC | 1671 | CG6677-PC | 647..1668 | 45..1066 | 5110 | 100 | Plus |
ash2-RE | 663 | CG6677-PE | 1..660 | 407..1066 | 3300 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:06:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ash2-RB | 1413 | CG6677-RB | 187..1236 | 17..1066 | 5250 | 100 | Plus |
ash2-RE | 1271 | CG6677-RE | 73..1094 | 45..1066 | 5110 | 100 | Plus |
ash2-RC | 1949 | CG6677-RC | 751..1772 | 45..1066 | 5110 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:06:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24651861..24652241 | 45..425 | 1905 | 100 | Plus |
3R | 32079331 | 3R | 24652310..24652590 | 426..706 | 1405 | 100 | Plus |
3R | 32079331 | 3R | 24652781..24653039 | 706..964 | 1295 | 100 | Plus |
3R | 32079331 | 3R | 24653097..24653199 | 964..1066 | 515 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 11:06:30 has no hits.
BO17106.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:25:01 Download gff for
BO17106.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ash2-RB | 1..1053 | 17..1067 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:45:25 Download gff for
BO17106.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ash2-RB | 71..1126 | 8..1066 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:19:46 Download gff for
BO17106.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ash2-RB | 187..1236 | 17..1068 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:25:01 Download gff for
BO17106.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ash2-RB | 71..1126 | 8..1066 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:38:56 Download gff for
BO17106.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ash2-RB | 187..1236 | 17..1068 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:38:56 Download gff for
BO17106.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24651603..24651630 | 17..44 | 100 | -> | Plus |
3R | 24651861..24652241 | 45..425 | 100 | -> | Plus |
3R | 24652310..24652590 | 426..706 | 100 | -> | Plus |
3R | 24652782..24653039 | 707..964 | 100 | -> | Plus |
3R | 24653098..24653199 | 965..1068 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:19:46 Download gff for
BO17106.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20477325..20477352 | 17..44 | 100 | -> | Plus |
arm_3R | 20477583..20477963 | 45..425 | 100 | -> | Plus |
arm_3R | 20478032..20478312 | 426..706 | 100 | -> | Plus |
arm_3R | 20478504..20478761 | 707..964 | 100 | -> | Plus |
arm_3R | 20478820..20478921 | 965..1068 | 98 | | Plus |
BO17106.pep Sequence
Translation from 16 to 1084
> BO17106.pep
MASSFTDEESSLSKNNRQKRKFPGTDSGPTGKKGRPSSDITANVKLPPHG
YPLEHPFNKDGYRYILAEPDPHAPFRQEFDESSDWAGKPIPGWLYRILVP
HSVLLALHDRAPQLKISEDRLAVTGERGYCMVRATHSVNRGCWYFEVTIE
EMPDGAATRLGWGREYGNLQAPLGYDKFGYSWRSRKGTKFTESHGKHYSD
AYVEGDTLGFLIELPEEASLDYLPNTFKDRPLVKFKSHLYYEDKDKITET
LKNLHILQGSRIEFFKNGQSQGVAFEDIYAGSYFPAISIHKSATVSVNFG
PAFKYPEVLVEHKAKGMHDRVEELITEQCLADTLYLTEHDGRLRLDNMGL
ASFLDH
BO17106.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:01:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ash2-PB | 350 | CG6677-PB | 1..350 | 1..350 | 1886 | 100 | Plus |
ash2-PC | 556 | CG6677-PC | 215..556 | 9..350 | 1841 | 99.4 | Plus |
ash2-PE | 220 | CG6677-PE | 1..220 | 131..350 | 1179 | 100 | Plus |