Clone BO17108 Report

Search the DGRC for BO17108

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:171
Well:8
Vector:pDNR-Dual
Associated Gene/TranscriptCG32187-RA
Protein status:BO17108.pep: validated full length
Sequenced Size:1261

Clone Sequence Records

BO17108.3prime Sequence

673 bp (546 high quality bases) assembled on 2006-10-13

> BO17108.3prime
ATGGTCTAGAAAGCTTGCTTCGCCAGGCTCGATGGCCACCAGTTCGTCAA
GGAGCTCAACCCTTCGCTGCAGTCCCTTCGAGTCCTTCTCACTGCCCCTG
ACACCCTCCGCCACCCCGCCCCAACTAAAGGACCTATGCCCAGGATCCTC
CAGTCCATCGTCCTCGTACTCTTCGCAGATGTTGTGCATCGCACAGATGC
TCTCCACAATGAGGCGCACCTCGTTCAAATCCCGGGCCTCCAAAGCGTAC
AGGGTATTGAAACGTCGTGCCAAGGTGTCCAGTACCTGTTCCGCCAGCTC
GAAGGCGGGACGCAGCATTTCGTTGAACATCGCATCCTTGCGGAAGCACT
CGGCCTCAATGGGCCGCATCAGGTAGGATTTGAGAGGAAACACATCGTTT
CCGATGAGATAGCTGCCCGCCGGCATGGTCCTCGGATTCAGGGCCAATGT
CTGGCCAATGGGTGAGTCCTCGAAGCTGTACTCCATGGCCAGCTCAACGT
AGCAGTCGACGATCTTTCGCTCGGCATTGCATATTAACTGGAGCACCACA
GGCACATCGGCGTGCTCCGACTCCAGAAATACGTCCAGTCGCCTCAGCGT
TATTATGCCAAACAGTTCCCGAAAGCAGCGCAGTTTGTCCAGTCTCTGAA
TTCCCTGCAGGGTGCTCCGCTGG

BO17108.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:06:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG32187-PA 1230 CG32187-RA 573..1227 673..19 3225 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:49:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG32187-RA 1326 CG32187-RA 645..1299 673..19 3245 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:49:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17804943..17805597 19..673 3245 99.7 Plus
Blast to na_te.dros performed 2015-02-10 17:49:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 3517..3579 281..346 115 68.2 Plus

BO17108.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:02:34 Download gff for BO17108.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32187-PA 573..1230 15..673 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:45:28 Download gff for BO17108.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32187-RA 645..1304 14..673 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:01:19 Download gff for BO17108.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32187-RA 645..1304 14..673 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:01:19 Download gff for BO17108.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 17804938..17805597 14..673 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:45:28 Download gff for BO17108.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17798038..17798697 14..673 99   Plus

BO17108.5prime Sequence

569 bp (510 high quality bases) assembled on 2006-10-13

> BO17108.5prime
GAAGTTATCAGTCGACATGGAGGAACGCGCTGTGCTCGCTAACATTGCGT
CCATAATCACCAAGGACTTGCTGATTGATCAGCCGTCCGTGGACATCAAT
TCAGGCATTTATCCGCTGTTGACCTTCGACGAGGACGACGATGAGGCAGA
GATTTTCGCTTTGATGCAGCGAAAACGGGCGTTGGCTTCCGGCCGGAAGC
GCAGGAACTCCCAAGAACCGGAGGACCGGAAACAGGACCTAAAGATGCCC
AAGCTGGAGTGGCACCACCCGGAACTCAACCTACTGCACCGCTACACGGA
TGCCCAGTTCGAGTCCTACCTTCACATGCGCAAGCTAACATTCCTGAAAA
TCCAGCAAGCCCTAGAGAAAACTTTATGTGGAATCGCGTTGCCAGGCTAT
CCCAGTCCGCCGGCGCAGACCATGGTGTCCTTGGCCCTGTGGAAGCTGTC
CACCGACGAGCACTTCGAGGAGATCGCCCGCAAGTTTCGACTGCCCTGGG
CTCTCTGCCAGCAAGTGGTGCGGGCATTCTGGCACTGCATCTCCGATAAT
TACGAGAGCTTTATTAAGT

BO17108.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:06:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG32187-PA 1230 CG32187-RA 1..553 17..569 2740 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:49:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG32187-RA 1326 CG32187-RA 72..625 16..569 2755 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:49:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17805964..17806294 346..16 1655 100 Minus
3L 28110227 3L 17805617..17805840 569..346 1105 99.6 Minus
Blast to na_te.dros performed on 2015-02-10 17:49:50 has no hits.

BO17108.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:02:35 Download gff for BO17108.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32187-PA 1..553 17..569 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:45:29 Download gff for BO17108.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32187-RA 62..625 5..569 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:01:56 Download gff for BO17108.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32187-RA 62..625 5..569 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:01:56 Download gff for BO17108.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 17805964..17806304 5..346 98   Minus
3L 17805617..17805839 347..569 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:45:29 Download gff for BO17108.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17798717..17798939 347..569 99 <- Minus
arm_3L 17799064..17799404 5..346 98   Minus

BO17108.complete Sequence

1261 bp assembled on 2007-03-23

GenBank Submission: FJ634027

> BO17108.complete
GAAGTTATCAGTCGACATGGAGGAACGCGCTGTGCTCGCTAACATTGCGT
CCATAATCACCAAGGACTTGCTGATTGATCAGCCGTCCGTGGACATCAAT
TCAGGCATTTATCCGCTGTTGACCTTCGACGAGGACGACGATGAGGCAGA
GATTTTCGCTTTGATGCAGCGAAAACGGGCGTTGGCTTCCGGCCGGAAGC
GCAGGAACTCCCAAGAACCGGAGGACCGGAAACAGGACCTAAAGATGCCC
AAGCTGGAGTGGCACCACCCGGAACTCAACCTACTGCACCGCTACACGGA
TGCCCAGTTCGAGTCCTACCTTCACATGCGCAAGCTAACATTCCTGAAAA
TCCAGCAAGCCCTAGAGAAAACTTTATGTGGAATCGCGTTGCCAGGCTAT
CCCAGTCCGCCGGCGCAGACCATGGTGTCCTTGGCCCTGTGGAAGCTGTC
CACCGACGAGCACTTCGAGGAGATCGCCCGCAAGTTTCGACTGCCCTGGG
CTCTCTGCCAGCAGGTGGTGCGGGCATTCTGGCACTGCATCTCCGATAAT
TACGAGAGCTTTATTAAGTGGCCAAACTCACTGGCGGCCCAGCGGAGCAC
CCTGCAGGGATATCAGAGACTGGACAAACTGCGCTGCTTTCGGGAACTGT
TTGGCATAATAACGCTGAGGCGACTGGACGTATTTCTGGAGTCGGAGCAC
GCCGATGTGCCTGTGGTGCTCCAGTTAATATGCAATGCCGAGCGAAAGAT
CGTCGACTGCTACGTTGAGCTGGCCATGGAGTACAGCTTCGAGGACTCAC
CCATTGGCCAGACATTGGCCCTGAATCCGAGGACCATGCCGGCGGGCAGC
TATCTCATCGGAAACGATGTGTTTCCTCTCAAATCCTACCTGATGCGGCC
CATTGAGGCCGAGTGCTTCCGCAAGGATGCGATGTTCAACGAAATGCTGC
GTCCCGCCTTCGAGCTGGCGGAACAGGTACTGGACACCTTGGCACGACGT
TTCAATACCCTGTACGCTTTGGAGGCCCGGGATTTGAACGAGGTGCGCCT
CATTGTGGAGAGCATCTGTGCGATGCACAACATCTGCGAAGAGTACGAGG
ACGATGGACTGGAGGATCCTGGGCATAGGTCCTTTAGTTGGGGCGGGGTG
GCGGAGGGTGTCAGGGGCAGTGAGAAGGACTCGAAGGGACTGCAGCGAAG
GGTTGAGCTCCTTGACGAACTGGTGGCCATCGAGCCTGGCGAAGCAAGCT
TTCTAGACCAT

BO17108.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:44:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG32187-RA 1230 CG32187-PA 1..1227 17..1243 6135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:44:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG32187-RA 1326 CG32187-RA 72..1299 16..1243 6140 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:44:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17804943..17805840 1243..346 4490 100 Minus
3L 28110227 3L 17805964..17806294 346..16 1655 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:44:18 has no hits.

BO17108.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:10:42 Download gff for BO17108.complete
Subject Subject Range Query Range Percent Splice Strand
CG32187-RA 1..1230 17..1247 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:28:32 Download gff for BO17108.complete
Subject Subject Range Query Range Percent Splice Strand
CG32187-RA 62..1302 5..1247 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:43:16 Download gff for BO17108.complete
Subject Subject Range Query Range Percent Splice Strand
CG32187-RA 73..1299 17..1245 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:10:42 Download gff for BO17108.complete
Subject Subject Range Query Range Percent Splice Strand
CG32187-RA 62..1302 5..1247 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:02:35 Download gff for BO17108.complete
Subject Subject Range Query Range Percent Splice Strand
CG32187-RA 73..1299 17..1245 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:02:35 Download gff for BO17108.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17804941..17805839 347..1245 99 <- Minus
3L 17805964..17806293 17..346 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:43:16 Download gff for BO17108.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17798041..17798939 347..1245 99 <- Minus
arm_3L 17799064..17799393 17..346 100   Minus

BO17108.pep Sequence

Translation from 16 to 1261

> BO17108.pep
MEERAVLANIASIITKDLLIDQPSVDINSGIYPLLTFDEDDDEAEIFALM
QRKRALASGRKRRNSQEPEDRKQDLKMPKLEWHHPELNLLHRYTDAQFES
YLHMRKLTFLKIQQALEKTLCGIALPGYPSPPAQTMVSLALWKLSTDEHF
EEIARKFRLPWALCQQVVRAFWHCISDNYESFIKWPNSLAAQRSTLQGYQ
RLDKLRCFRELFGIITLRRLDVFLESEHADVPVVLQLICNAERKIVDCYV
ELAMEYSFEDSPIGQTLALNPRTMPAGSYLIGNDVFPLKSYLMRPIEAEC
FRKDAMFNEMLRPAFELAEQVLDTLARRFNTLYALEARDLNEVRLIVESI
CAMHNICEEYEDDGLEDPGHRSFSWGGVAEGVRGSEKDSKGLQRRVELLD
ELVAIEPGEASFLDH

BO17108.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:32:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG32187-PA 409 CG32187-PA 1..409 1..409 2133 100 Plus