Clone Sequence Records
BO17108.3prime Sequence
673 bp (546 high quality bases) assembled on 2006-10-13
> BO17108.3prime
ATGGTCTAGAAAGCTTGCTTCGCCAGGCTCGATGGCCACCAGTTCGTCAA
GGAGCTCAACCCTTCGCTGCAGTCCCTTCGAGTCCTTCTCACTGCCCCTG
ACACCCTCCGCCACCCCGCCCCAACTAAAGGACCTATGCCCAGGATCCTC
CAGTCCATCGTCCTCGTACTCTTCGCAGATGTTGTGCATCGCACAGATGC
TCTCCACAATGAGGCGCACCTCGTTCAAATCCCGGGCCTCCAAAGCGTAC
AGGGTATTGAAACGTCGTGCCAAGGTGTCCAGTACCTGTTCCGCCAGCTC
GAAGGCGGGACGCAGCATTTCGTTGAACATCGCATCCTTGCGGAAGCACT
CGGCCTCAATGGGCCGCATCAGGTAGGATTTGAGAGGAAACACATCGTTT
CCGATGAGATAGCTGCCCGCCGGCATGGTCCTCGGATTCAGGGCCAATGT
CTGGCCAATGGGTGAGTCCTCGAAGCTGTACTCCATGGCCAGCTCAACGT
AGCAGTCGACGATCTTTCGCTCGGCATTGCATATTAACTGGAGCACCACA
GGCACATCGGCGTGCTCCGACTCCAGAAATACGTCCAGTCGCCTCAGCGT
TATTATGCCAAACAGTTCCCGAAAGCAGCGCAGTTTGTCCAGTCTCTGAA
TTCCCTGCAGGGTGCTCCGCTGG
BO17108.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:06:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32187-PA | 1230 | CG32187-RA | 573..1227 | 673..19 | 3225 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:49:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32187-RA | 1326 | CG32187-RA | 645..1299 | 673..19 | 3245 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:49:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17804943..17805597 | 19..673 | 3245 | 99.7 | Plus |
Blast to na_te.dros performed 2015-02-10 17:49:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 3517..3579 | 281..346 | 115 | 68.2 | Plus |
BO17108.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:02:34 Download gff for
BO17108.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32187-PA | 573..1230 | 15..673 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:45:28 Download gff for
BO17108.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32187-RA | 645..1304 | 14..673 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:01:19 Download gff for
BO17108.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32187-RA | 645..1304 | 14..673 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:01:19 Download gff for
BO17108.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17804938..17805597 | 14..673 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:45:28 Download gff for
BO17108.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17798038..17798697 | 14..673 | 99 | | Plus |
BO17108.5prime Sequence
569 bp (510 high quality bases) assembled on 2006-10-13
> BO17108.5prime
GAAGTTATCAGTCGACATGGAGGAACGCGCTGTGCTCGCTAACATTGCGT
CCATAATCACCAAGGACTTGCTGATTGATCAGCCGTCCGTGGACATCAAT
TCAGGCATTTATCCGCTGTTGACCTTCGACGAGGACGACGATGAGGCAGA
GATTTTCGCTTTGATGCAGCGAAAACGGGCGTTGGCTTCCGGCCGGAAGC
GCAGGAACTCCCAAGAACCGGAGGACCGGAAACAGGACCTAAAGATGCCC
AAGCTGGAGTGGCACCACCCGGAACTCAACCTACTGCACCGCTACACGGA
TGCCCAGTTCGAGTCCTACCTTCACATGCGCAAGCTAACATTCCTGAAAA
TCCAGCAAGCCCTAGAGAAAACTTTATGTGGAATCGCGTTGCCAGGCTAT
CCCAGTCCGCCGGCGCAGACCATGGTGTCCTTGGCCCTGTGGAAGCTGTC
CACCGACGAGCACTTCGAGGAGATCGCCCGCAAGTTTCGACTGCCCTGGG
CTCTCTGCCAGCAAGTGGTGCGGGCATTCTGGCACTGCATCTCCGATAAT
TACGAGAGCTTTATTAAGT
BO17108.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:06:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32187-PA | 1230 | CG32187-RA | 1..553 | 17..569 | 2740 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:49:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32187-RA | 1326 | CG32187-RA | 72..625 | 16..569 | 2755 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:49:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17805964..17806294 | 346..16 | 1655 | 100 | Minus |
3L | 28110227 | 3L | 17805617..17805840 | 569..346 | 1105 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:49:50 has no hits.
BO17108.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:02:35 Download gff for
BO17108.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32187-PA | 1..553 | 17..569 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:45:29 Download gff for
BO17108.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32187-RA | 62..625 | 5..569 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:01:56 Download gff for
BO17108.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32187-RA | 62..625 | 5..569 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:01:56 Download gff for
BO17108.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17805964..17806304 | 5..346 | 98 | | Minus |
3L | 17805617..17805839 | 347..569 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:45:29 Download gff for
BO17108.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17798717..17798939 | 347..569 | 99 | <- | Minus |
arm_3L | 17799064..17799404 | 5..346 | 98 | | Minus |
BO17108.complete Sequence
1261 bp assembled on 2007-03-23
GenBank Submission: FJ634027
> BO17108.complete
GAAGTTATCAGTCGACATGGAGGAACGCGCTGTGCTCGCTAACATTGCGT
CCATAATCACCAAGGACTTGCTGATTGATCAGCCGTCCGTGGACATCAAT
TCAGGCATTTATCCGCTGTTGACCTTCGACGAGGACGACGATGAGGCAGA
GATTTTCGCTTTGATGCAGCGAAAACGGGCGTTGGCTTCCGGCCGGAAGC
GCAGGAACTCCCAAGAACCGGAGGACCGGAAACAGGACCTAAAGATGCCC
AAGCTGGAGTGGCACCACCCGGAACTCAACCTACTGCACCGCTACACGGA
TGCCCAGTTCGAGTCCTACCTTCACATGCGCAAGCTAACATTCCTGAAAA
TCCAGCAAGCCCTAGAGAAAACTTTATGTGGAATCGCGTTGCCAGGCTAT
CCCAGTCCGCCGGCGCAGACCATGGTGTCCTTGGCCCTGTGGAAGCTGTC
CACCGACGAGCACTTCGAGGAGATCGCCCGCAAGTTTCGACTGCCCTGGG
CTCTCTGCCAGCAGGTGGTGCGGGCATTCTGGCACTGCATCTCCGATAAT
TACGAGAGCTTTATTAAGTGGCCAAACTCACTGGCGGCCCAGCGGAGCAC
CCTGCAGGGATATCAGAGACTGGACAAACTGCGCTGCTTTCGGGAACTGT
TTGGCATAATAACGCTGAGGCGACTGGACGTATTTCTGGAGTCGGAGCAC
GCCGATGTGCCTGTGGTGCTCCAGTTAATATGCAATGCCGAGCGAAAGAT
CGTCGACTGCTACGTTGAGCTGGCCATGGAGTACAGCTTCGAGGACTCAC
CCATTGGCCAGACATTGGCCCTGAATCCGAGGACCATGCCGGCGGGCAGC
TATCTCATCGGAAACGATGTGTTTCCTCTCAAATCCTACCTGATGCGGCC
CATTGAGGCCGAGTGCTTCCGCAAGGATGCGATGTTCAACGAAATGCTGC
GTCCCGCCTTCGAGCTGGCGGAACAGGTACTGGACACCTTGGCACGACGT
TTCAATACCCTGTACGCTTTGGAGGCCCGGGATTTGAACGAGGTGCGCCT
CATTGTGGAGAGCATCTGTGCGATGCACAACATCTGCGAAGAGTACGAGG
ACGATGGACTGGAGGATCCTGGGCATAGGTCCTTTAGTTGGGGCGGGGTG
GCGGAGGGTGTCAGGGGCAGTGAGAAGGACTCGAAGGGACTGCAGCGAAG
GGTTGAGCTCCTTGACGAACTGGTGGCCATCGAGCCTGGCGAAGCAAGCT
TTCTAGACCAT
BO17108.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:44:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32187-RA | 1230 | CG32187-PA | 1..1227 | 17..1243 | 6135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:44:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32187-RA | 1326 | CG32187-RA | 72..1299 | 16..1243 | 6140 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:44:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17804943..17805840 | 1243..346 | 4490 | 100 | Minus |
3L | 28110227 | 3L | 17805964..17806294 | 346..16 | 1655 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:44:18 has no hits.
BO17108.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:10:42 Download gff for
BO17108.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32187-RA | 1..1230 | 17..1247 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:28:32 Download gff for
BO17108.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32187-RA | 62..1302 | 5..1247 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:43:16 Download gff for
BO17108.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32187-RA | 73..1299 | 17..1245 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:10:42 Download gff for
BO17108.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32187-RA | 62..1302 | 5..1247 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:02:35 Download gff for
BO17108.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32187-RA | 73..1299 | 17..1245 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:02:35 Download gff for
BO17108.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17804941..17805839 | 347..1245 | 99 | <- | Minus |
3L | 17805964..17806293 | 17..346 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:43:16 Download gff for
BO17108.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17798041..17798939 | 347..1245 | 99 | <- | Minus |
arm_3L | 17799064..17799393 | 17..346 | 100 | | Minus |
BO17108.pep Sequence
Translation from 16 to 1261
> BO17108.pep
MEERAVLANIASIITKDLLIDQPSVDINSGIYPLLTFDEDDDEAEIFALM
QRKRALASGRKRRNSQEPEDRKQDLKMPKLEWHHPELNLLHRYTDAQFES
YLHMRKLTFLKIQQALEKTLCGIALPGYPSPPAQTMVSLALWKLSTDEHF
EEIARKFRLPWALCQQVVRAFWHCISDNYESFIKWPNSLAAQRSTLQGYQ
RLDKLRCFRELFGIITLRRLDVFLESEHADVPVVLQLICNAERKIVDCYV
ELAMEYSFEDSPIGQTLALNPRTMPAGSYLIGNDVFPLKSYLMRPIEAEC
FRKDAMFNEMLRPAFELAEQVLDTLARRFNTLYALEARDLNEVRLIVESI
CAMHNICEEYEDDGLEDPGHRSFSWGGVAEGVRGSEKDSKGLQRRVELLD
ELVAIEPGEASFLDH
BO17108.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:32:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32187-PA | 409 | CG32187-PA | 1..409 | 1..409 | 2133 | 100 | Plus |