Clone Sequence Records
BO17110.3prime Sequence
656 bp (628 high quality bases) assembled on 2006-10-13
> BO17110.3prime
ATGGTCTAGAAAGCTTGCATCATCATTTACAGGTCCTTCAAAGGGAGCCT
TGCAACCAGCCTTTTCGTAAAACTCGAATGGCAGCGGATCCTCGTTGTCG
TAATAGTCGGAATCGCGGGCGCAACTGGGACCAAGTTCCATTTTCACCAT
CTTGTCGCGCCAAAAGTCGAGAAGCTCTTTGGTGAGAACCTCATCCCTCA
GATTGAAAATCCAACTGTTGTAGTCGTCGGGCCCATAGAAACCAGCATCA
CCCTTGTACTCCTGCAGCAGCTCGGCGGCCTTGTTTTGATCCTCCGCTGA
GGGTGTGCCATCGAAGAGCAGCTTCCAGATTATCTCCCTGGCGGCTGCCG
CTATCTTCTTCACGCTGGCCTGGTGAACGCTGTCCGGAACGATGATTTTG
GTCAGAACAAAGCGCTTCATTAGAGTTCGGTATTCCTCGAGCGGATTTTC
CTTGGTCAGGGTGGCCTCAAATTCGCCAGACAGAGCGGCGGCATCATCGG
CACTCAGTTCACCCGGAGTTGTAGGCGTCGCTGGCCCATCCTGATCCAGC
GAAGCCTGCTCCTCGAGTGCTGCGCGCACCTTTAAGCTGGCTGCAAATGG
AGCGGTACAACCGGCATGGGCATAGAACTCCAATGGCGGGGTGTCGTCGC
TGTCAA
BO17110.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4930-PA | 1080 | CG4930-RA | 440..1077 | 656..19 | 3190 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:12:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| EndoGI-RC | 1438 | CG4930-RC | 549..1186 | 656..19 | 3190 | 100 | Minus |
| EndoGI-RB | 1406 | CG4930-RB | 595..1232 | 656..19 | 3190 | 100 | Minus |
| EndoGI-RA | 1360 | CG4930-RA | 549..1186 | 656..19 | 3190 | 100 | Minus |
| EndoGI-RC | 1438 | CG4930-RC | 418..528 | 231..122 | 215 | 80.2 | Minus |
| EndoGI-RB | 1406 | CG4930-RB | 464..574 | 231..122 | 215 | 80.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:12:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16258622..16259259 | 656..19 | 3190 | 100 | Minus |
| 2L | 23513712 | 2L | 16258510..16258601 | 213..122 | 205 | 81.5 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:12:23 has no hits.
BO17110.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:02:37 Download gff for
BO17110.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4930-PA | 442..1080 | 18..654 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:03:28 Download gff for
BO17110.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EndoGI-RA | 551..1186 | 19..654 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:23:59 Download gff for
BO17110.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EndoGI-RA | 551..1186 | 19..654 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:23:59 Download gff for
BO17110.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16258624..16259259 | 19..654 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:03:28 Download gff for
BO17110.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16258624..16259259 | 19..654 | 100 | | Minus |
BO17110.5prime Sequence
674 bp (635 high quality bases) assembled on 2006-10-13
> BO17110.5prime
GAAGTTATCAGTCGACATGTCCAAGCGCAAGGCCGAGGACACACAATCCG
ACAAAATGGCAACGGCCGAGAAAGTAGCACAGAACGATTACACCATTGGC
CTGGTGGATCCCGTTAAGGATTACCAAAAGCTTATCGAAACACGCGTGCA
GGTAGACGAAATCGTGGATGATGATGTCACCAAGGAGAATTTCGATCGAA
CGGCTGCAGCGGCGCGTGACGTCATCTGGCGGCTGTTATTCGACGAGGCC
GGTACCTCGCAATCGAACACAGAGAAGGCCAGCCAATTGCTGGAGGAATA
CCGTGGTGACGCCTGCTTCTACGACCCGACGCCGTACAACGAATGGATTG
TCAAGCTGAGGGATGAGGTTCTAAAGAAGGAACTCCTCGACTTTTGGCGC
GATGTGCTGGTGAAGAAGCAACTCGGTCCCTGTTGGTCACGCGACAGTGA
TCTCTTTGACAGCGACGACACCCCGCCATTGGAGTTCTATGCCCATGCCG
GTTGTACCGCTCCATTTGCAGCCAGCTTAAAGGTGCGCGCAGCACTCGAG
GAGCAGGCTTCGCTGGATCAGGATGGGCCAGCGACGCCTACAACTCCGGG
TGAACTGAGTGCCGATGATGCCGCCGCTCTGTCTGGCGAATTTGAGGCCA
CCCTGACCAAAGAAAATCCGCTCG
BO17110.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4930-PA | 1080 | CG4930-RA | 1..658 | 17..674 | 3265 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:36:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| EndoGI-RC | 1438 | CG4930-RC | 110..767 | 17..674 | 3275 | 99.8 | Plus |
| EndoGI-RB | 1406 | CG4930-RB | 156..813 | 17..674 | 3275 | 99.8 | Plus |
| EndoGI-RA | 1360 | CG4930-RA | 110..767 | 17..674 | 3275 | 99.8 | Plus |
| EndoGI-RC | 1438 | CG4930-RC | 974..1083 | 325..435 | 215 | 80.2 | Plus |
| EndoGI-RB | 1406 | CG4930-RB | 1020..1129 | 325..435 | 215 | 80.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:36:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16258245..16258840 | 79..674 | 2965 | 99.8 | Plus |
| 2L | 23513712 | 2L | 16258114..16258179 | 17..82 | 330 | 100 | Plus |
| 2L | 23513712 | 2L | 16259065..16259156 | 344..435 | 205 | 81.5 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:36:15 has no hits.
BO17110.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:02:38 Download gff for
BO17110.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4930-PA | 1..658 | 17..674 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:14:47 Download gff for
BO17110.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EndoGI-RA | 104..767 | 10..674 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:48:36 Download gff for
BO17110.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EndoGI-RA | 104..767 | 10..674 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:48:36 Download gff for
BO17110.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16258108..16258179 | 10..82 | 95 | -> | Plus |
| 2L | 16258249..16258840 | 83..674 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:14:47 Download gff for
BO17110.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16258108..16258179 | 10..82 | 95 | -> | Plus |
| arm_2L | 16258249..16258840 | 83..674 | 99 | | Plus |
BO17110.complete Sequence
1111 bp assembled on 2006-10-11
GenBank Submission: FJ634028
> BO17110.complete
GAAGTTATCAGTCGACATGTCCAAGCGCAAGGCCGAGGACACACAATCCG
ACAAAATGGCAACGGCCGAGAAAGTAGCACAGAACGATTACACCATTGGC
CTGGTGGATCCCGTTAAGGATTACCAAAAGCTTATCGAAACACGCGTGCA
GGTAGACGAAATCGTGGATGATGATGTCACCAAGGAGAATTTCGATCGAA
CGGCTGCAGCGGCGCGTGACGTCATCTGGCGGCTGTTATTCGACGAGGCC
GGTACCTCGCAATCGAACACAGAGAAGGCCAGCCAATTGCTGGAGGAATA
CCGTGGTGACGCCTGCTTCTACGACCCGACGCCGTACAACGAATGGATTG
TCAAGCTGAGGGATGAGGTTCTAAAGAAGGAACTCCTCGACTTTTGGCGC
GATGTGCTGGTGAAGAAGCAACTCGGTCCCTGTTGGTCACGCGACAGTGA
TCTCTTTGACAGCGACGACACCCCGCCATTGGAGTTCTATGCCCATGCCG
GTTGTACCGCTCCATTTGCAGCCAGCTTAAAGGTGCGCGCAGCACTCGAG
GAGCAGGCTTCGCTGGATCAGGATGGGCCAGCGACGCCTACAACTCCGGG
TGAACTGAGTGCCGATGATGCCGCCGCTCTGTCTGGCGAATTTGAGGCCA
CCCTGACCAAGGAAAATCCGCTCGAGGAATACCGAACTCTAATGAAGCGC
TTTGTTCTGACCAAAATCATCGTTCCGGACAGCGTTCACCAGGCCAGCGT
GAAGAAGATAGCGGCAGCCGCCAGGGAGATAATCTGGAAGCTGCTCTTCG
ATGGCACACCCTCAGCGGAGGATCAAAACAAGGCCGCCGAGCTGCTGCAG
GAGTACAAGGGTGATGCTGGTTTCTATGGGCCCGACGACTACAACAGTTG
GATTTTCAATCTGAGGGATGAGGTTCTCACCAAAGAGCTTCTCGACTTTT
GGCGCGACAAGATGGTGAAAATGGAACTTGGTCCCAGTTGCGCCCGCGAT
TCCGACTATTACGACAACGAGGATCCGCTGCCATTCGAGTTTTACGAAAA
GGCTGGTTGCAAGGCTCCCTTTGAAGGACCTGTAAATGATGATGCAAGCT
TTCTAGACCAT
BO17110.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:52:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| EndoGI-RC | 1080 | CG4930-PC | 1..1077 | 17..1093 | 5385 | 100 | Plus |
| EndoGI-RB | 1080 | CG4930-PB | 1..1077 | 17..1093 | 5385 | 100 | Plus |
| EndoGI-RA | 1080 | CG4930-PA | 1..1077 | 17..1093 | 5385 | 100 | Plus |
| EndoGI-RC | 1080 | CG4930-PC | 328..419 | 899..990 | 205 | 81.5 | Plus |
| EndoGI-RC | 1080 | CG4930-PC | 883..974 | 344..435 | 205 | 81.5 | Plus |
| EndoGI-RB | 1080 | CG4930-PB | 328..419 | 899..990 | 205 | 81.5 | Plus |
| EndoGI-RB | 1080 | CG4930-PB | 883..974 | 344..435 | 205 | 81.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:52:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| EndoGI-RC | 1438 | CG4930-RC | 110..1186 | 17..1093 | 5385 | 100 | Plus |
| EndoGI-RB | 1406 | CG4930-RB | 156..1232 | 17..1093 | 5385 | 100 | Plus |
| EndoGI-RA | 1360 | CG4930-RA | 110..1186 | 17..1093 | 5385 | 100 | Plus |
| EndoGI-RC | 1438 | CG4930-RC | 437..528 | 899..990 | 205 | 81.5 | Plus |
| EndoGI-RC | 1438 | CG4930-RC | 992..1083 | 344..435 | 205 | 81.5 | Plus |
| EndoGI-RB | 1406 | CG4930-RB | 483..574 | 899..990 | 205 | 81.5 | Plus |
| EndoGI-RB | 1406 | CG4930-RB | 1038..1129 | 344..435 | 205 | 81.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:52:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16258245..16259259 | 79..1093 | 5075 | 100 | Plus |
| 2L | 23513712 | 2L | 16258114..16258179 | 17..82 | 330 | 100 | Plus |
| 2L | 23513712 | 2L | 16258510..16258601 | 899..990 | 205 | 81.5 | Plus |
| 2L | 23513712 | 2L | 16259065..16259156 | 344..435 | 205 | 81.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:52:53 has no hits.
BO17110.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:25:02 Download gff for
BO17110.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4930-RA | 1..1080 | 17..1094 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:45:26 Download gff for
BO17110.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4930-RA | 116..1198 | 10..1093 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:15:09 Download gff for
BO17110.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EndoGI-RA | 110..1186 | 17..1095 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:25:02 Download gff for
BO17110.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4930-RA | 116..1198 | 10..1093 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:30:13 Download gff for
BO17110.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EndoGI-RA | 110..1186 | 17..1095 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:30:13 Download gff for
BO17110.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16258114..16258179 | 17..82 | 100 | -> | Plus |
| 2L | 16258249..16259259 | 83..1095 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:15:09 Download gff for
BO17110.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16258114..16258179 | 17..82 | 100 | -> | Plus |
| arm_2L | 16258249..16259259 | 83..1095 | 99 | | Plus |
BO17110.pep Sequence
Translation from 16 to 1111
> BO17110.pep
MSKRKAEDTQSDKMATAEKVAQNDYTIGLVDPVKDYQKLIETRVQVDEIV
DDDVTKENFDRTAAAARDVIWRLLFDEAGTSQSNTEKASQLLEEYRGDAC
FYDPTPYNEWIVKLRDEVLKKELLDFWRDVLVKKQLGPCWSRDSDLFDSD
DTPPLEFYAHAGCTAPFAASLKVRAALEEQASLDQDGPATPTTPGELSAD
DAAALSGEFEATLTKENPLEEYRTLMKRFVLTKIIVPDSVHQASVKKIAA
AAREIIWKLLFDGTPSAEDQNKAAELLQEYKGDAGFYGPDDYNSWIFNLR
DEVLTKELLDFWRDKMVKMELGPSCARDSDYYDNEDPLPFEFYEKAGCKA
PFEGPVNDDASFLDH
BO17110.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:01:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| EndoGI-PC | 359 | CG4930-PC | 1..359 | 1..359 | 1890 | 100 | Plus |
| EndoGI-PB | 359 | CG4930-PB | 1..359 | 1..359 | 1890 | 100 | Plus |
| EndoGI-PA | 359 | CG4930-PA | 1..359 | 1..359 | 1890 | 100 | Plus |
