Clone BO17111 Report

Search the DGRC for BO17111

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:171
Well:11
Vector:pDNR-Dual
Associated Gene/TranscriptCG17010-RA
Protein status:BO17111.pep: validated full length
Sequenced Size:1321

Clone Sequence Records

BO17111.3prime Sequence

706 bp (667 high quality bases) assembled on 2006-10-13

> BO17111.3prime
ATGGTCTAGAAAGCTTGCTGCTTTGTTGGCAGGTGGCTCATTAGCAGTCT
CCACGGGTTTCACAGGAGCTTGATCTGCGGTCTCCGCAGGCTTTGGAGGT
TCATCAGTGGTCTCCGCAGGCTTTGGAGGTTCATTGGAGGTTTCCACTGC
TTTCGGAGGTTCCTCGGAGGTCGTTGGTGGAGGTGCTTCCACAACCGGAT
CCTCCGGTGGAGGAGGTGCAGGTTTTTGCGGTTCTTCCACAACTTCCTTT
TGGGAGTGTGCTTCTTCGGGCGTAGGGACTACCATTGAAGGCGGTGGCGT
CTTTGTTACCATATTATCATCTTCATGTTGCGGACTAGAAGGTGGAATGA
CACTAAACGTGGGCGTCGAATAGCATAGGTCACTTTTGGCGCTTTCCTTG
CCCGGAAAACTTGGCTGAGTGCCGCGGCGGCCCATGGAGTAGGCGGCGCA
GGAGTGTGCCGCACTGATATGATGTTCTGTGGACAGTTTGGGAAATCGAG
CTATGTGATAGGCCAAGCTGCCCATAAAGGCATCACCGGCACCCGAGGGA
TCGGCCAAGTGCGGCACATCGGAGGCGGGCACATGGGTGCACATATCTTT
GCTCTTCTTGGACATGTAAACGGCTCCTTGCTCGCCCATGGTAATGATCA
CGCTCTTGGCTCCCTTTGCGATAAGAGTTTCAGCTGCTTTTCGCGCCTGA
TCAGGG

BO17111.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG17010-PA 1290 CG17010-RA 600..1287 706..19 3440 100 Minus
CG17010-PB 753 CG17010-RB 373..750 396..19 1890 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:14:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG17010-RA 1413 CG17010-RA 696..1383 706..19 3440 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:14:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12357189..12357876 706..19 3440 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:14:12 has no hits.

BO17111.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:02:38 Download gff for BO17111.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17010-PA 600..1290 15..706 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:27:00 Download gff for BO17111.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17010-RA 696..1390 10..706 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:47:46 Download gff for BO17111.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17010-RA 696..1390 10..706 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:47:46 Download gff for BO17111.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 12357189..12357883 10..706 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:27:00 Download gff for BO17111.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12357189..12357883 10..706 99   Minus

BO17111.5prime Sequence

653 bp (639 high quality bases) assembled on 2006-10-13

> BO17111.5prime
GAAGTTATCAGTCGACATGGGAAAGAAGCTGGATGTGGTTGTCTTCGGGA
CGGCAAACATCGAATATATAACATATGTCCCGGAATTGCCGAAACCCGGT
GAACTTGTCGCCGGAACGTACATGGAGACCTGTTTCGGTGGCAAGGGAGC
CAATCAGTGTGTGGCAGCTGCCAAATTGGGGGCCTCCACCGTCCTGGTCG
CCAAGTTGGGCAAGGACGAATCGGGCGATGACTACCTAAACCACCTGCAA
CAGCACGAGGTTGATGTGACGCACGTCCAGCAGGTGGAGAACAATCCCAC
GGGCATGAGTGAAATCGCGGTTTCTGAGAATGGAGATCAGTACAAGATCA
ACGTGGCTGGTGCGAATGTATTTCTCACGGCCAAGGATGTGACCCGGGCT
AAGAAGTCCTTTCAGGATGCGAAGGTGCTTCTCTGCCAACTGGAAACGGA
TATGAATGCCACCATGTGTGCGTTGCGTCAGTTCAAGGGGGTTTCCCTGC
TCCACATGTCGCCAATGCGAAAAGATATTCCAAATGCCATGATTGGCTTG
CCTACTATTCTGGTTGCGAATCAAGAGGCAGCTGCCAACCTAACCGATAT
GGAAGAAGTGTTAACCCCTGATCAGGCGCGAAAAGCAGCTGAAACTCTTA
TCG

BO17111.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG17010-PA 1290 CG17010-RA 1..637 17..653 3185 100 Plus
CG17010-PB 753 CG17010-RB 1..373 17..389 1865 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:00:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG17010-RA 1413 CG17010-RA 97..733 17..653 3185 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:00:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12356646..12357226 73..653 2905 100 Plus
2L 23513712 2L 12356537..12356592 17..72 280 100 Plus
Blast to na_te.dros performed on 2015-02-12 04:00:24 has no hits.

BO17111.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:02:39 Download gff for BO17111.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17010-PA 1..637 17..653 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:33:32 Download gff for BO17111.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17010-RA 93..733 12..653 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:00:07 Download gff for BO17111.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17010-RA 93..733 12..653 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:00:07 Download gff for BO17111.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 12356533..12356592 12..72 96 -> Plus
2L 12356646..12357226 73..653 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:33:32 Download gff for BO17111.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12356533..12356592 12..72 96 -> Plus
arm_2L 12356646..12357226 73..653 100   Plus

BO17111.complete Sequence

1321 bp assembled on 2006-10-11

GenBank Submission: FJ634029

> BO17111.complete
GAAGTTATCAGTCGACATGGGAAAGAAGCTGGATGTGGTTGTCTTCGGGA
CGGCAAACATCGAATATATAACATATGTCCCGGAATTGCCGAAACCCGGT
GAACTTGTCGCCGGAACGTACATGGAGACCTGTTTCGGTGGCAAGGGAGC
CAATCAGTGTGTGGCAGCTGCCAAATTGGGGGCCTCCACCGTCCTGGTCG
CCAAGTTGGGCAAGGACGAATCGGGCGATGACTACCTAAACCACCTGCAA
CAGCACGAGGTTGATGTGACGCACGTCCAGCAGGTGGAGAACAATCCCAC
GGGCATGAGTGAAATCGCGGTTTCTGAGAATGGAGATCAGTACAAGATCA
ACGTGGCTGGTGCGAATGTATTTCTCACGGCCAAGGATGTGACCCGGGCT
AAGAAGTCCTTTCAGGATGCGAAGGTGCTTCTCTGCCAACTGGAAACGGA
TATGAATGCCACCATGTGTGCGTTGCGTCAGTTCAAGGGGGTTTCCCTGC
TCCACATGTCGCCAATGCGAAAAGATATTCCAAATGCCATGATTGGCTTG
CCTACTATTCTGGTTGCGAATCAAGAGGCAGCTGCCAACCTAACCGATAT
GGAAGAAGTGTTAACCCCTGATCAGGCGCGAAAAGCAGCTGAAACTCTTA
TCGCAAAGGGAGCCAAGAGCGTGATCATTACCATGGGCGAGCAAGGAGCC
GTTTACATGTCCAAGAAGAGCAAAGATATGTGCACCCATGTGCCCGCCTC
CGATGTGCCGCACTTGGCCGATCCCTCGGGTGCCGGTGATGCCTTTATGG
GCAGCTTGGCCTATCACATAGCTCGATTTCCCAAACTGTCCACAGAACAT
CATATCAGTGCGGCACACTCCTGCGCCGCCTACTCCATGGGCCGCCGCGG
CACTCAGCCAAGTTTTCCGGGCAAGGAAAGCGCCAAAAGTGACCTATGCT
ATTCGACGCCCACGTTTAGTGTCATTCCACCTTCTAGTCCGCAACATGAA
GATGATAATATGGTAACAAAGACGCCACCGCCTTCAATGGTAGTCCCTAC
GCCCGAAGAAGCACACTCCCAAAAGGAAGTTGTGGAAGAACCGCAAAAAC
CTGCACCTCCTCCACCGGAGGATCCGGTTGTGGAAGCACCTCCACCAACG
ACCTCCGAGGAACCTCCGAAAGCAGTGGAAACCTCCAATGAACCTCCAAA
GCCTGCGGAGACCACTGATGAACCTCCAAAGCCTGCGGAGACCGCAGATC
AAGCTCCTGTGAAACCCGTGGAGACTGCTAATGAGCCACCTGCCAACAAA
GCAGCAAGCTTTCTAGACCAT

BO17111.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:03:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG17010-RA 1290 CG17010-PA 1..1287 17..1303 6435 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:03:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG17010-RA 1413 CG17010-RA 97..1383 17..1303 6435 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:03:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12356646..12357876 73..1303 6155 100 Plus
2L 23513712 2L 12356537..12356592 17..72 280 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:03:32 has no hits.

BO17111.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:25:03 Download gff for BO17111.complete
Subject Subject Range Query Range Percent Splice Strand
CG17010-RA 1..1290 17..1307 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:45:28 Download gff for BO17111.complete
Subject Subject Range Query Range Percent Splice Strand
CG17010-RA 93..1390 12..1312 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:34 Download gff for BO17111.complete
Subject Subject Range Query Range Percent Splice Strand
CG17010-RA 97..1383 17..1305 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:25:03 Download gff for BO17111.complete
Subject Subject Range Query Range Percent Splice Strand
CG17010-RA 93..1390 12..1312 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:09:22 Download gff for BO17111.complete
Subject Subject Range Query Range Percent Splice Strand
CG17010-RA 97..1383 17..1305 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:09:22 Download gff for BO17111.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12356537..12356592 17..72 100 -> Plus
2L 12356646..12357876 73..1305 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:34 Download gff for BO17111.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12356537..12356592 17..72 100 -> Plus
arm_2L 12356646..12357876 73..1305 99   Plus

BO17111.pep Sequence

Translation from 16 to 1321

> BO17111.pep
MGKKLDVVVFGTANIEYITYVPELPKPGELVAGTYMETCFGGKGANQCVA
AAKLGASTVLVAKLGKDESGDDYLNHLQQHEVDVTHVQQVENNPTGMSEI
AVSENGDQYKINVAGANVFLTAKDVTRAKKSFQDAKVLLCQLETDMNATM
CALRQFKGVSLLHMSPMRKDIPNAMIGLPTILVANQEAAANLTDMEEVLT
PDQARKAAETLIAKGAKSVIITMGEQGAVYMSKKSKDMCTHVPASDVPHL
ADPSGAGDAFMGSLAYHIARFPKLSTEHHISAAHSCAAYSMGRRGTQPSF
PGKESAKSDLCYSTPTFSVIPPSSPQHEDDNMVTKTPPPSMVVPTPEEAH
SQKEVVEEPQKPAPPPPEDPVVEAPPPTTSEEPPKAVETSNEPPKPAETT
DEPPKPAETADQAPVKPVETANEPPANKAASFLDH

BO17111.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:01:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG17010-PA 429 CG17010-PA 1..429 1..429 2239 100 Plus
CG13369-PA 304 CG13369-PA 5..302 6..301 685 48 Plus