Clone Sequence Records
BO17111.3prime Sequence
706 bp (667 high quality bases) assembled on 2006-10-13
> BO17111.3prime
ATGGTCTAGAAAGCTTGCTGCTTTGTTGGCAGGTGGCTCATTAGCAGTCT
CCACGGGTTTCACAGGAGCTTGATCTGCGGTCTCCGCAGGCTTTGGAGGT
TCATCAGTGGTCTCCGCAGGCTTTGGAGGTTCATTGGAGGTTTCCACTGC
TTTCGGAGGTTCCTCGGAGGTCGTTGGTGGAGGTGCTTCCACAACCGGAT
CCTCCGGTGGAGGAGGTGCAGGTTTTTGCGGTTCTTCCACAACTTCCTTT
TGGGAGTGTGCTTCTTCGGGCGTAGGGACTACCATTGAAGGCGGTGGCGT
CTTTGTTACCATATTATCATCTTCATGTTGCGGACTAGAAGGTGGAATGA
CACTAAACGTGGGCGTCGAATAGCATAGGTCACTTTTGGCGCTTTCCTTG
CCCGGAAAACTTGGCTGAGTGCCGCGGCGGCCCATGGAGTAGGCGGCGCA
GGAGTGTGCCGCACTGATATGATGTTCTGTGGACAGTTTGGGAAATCGAG
CTATGTGATAGGCCAAGCTGCCCATAAAGGCATCACCGGCACCCGAGGGA
TCGGCCAAGTGCGGCACATCGGAGGCGGGCACATGGGTGCACATATCTTT
GCTCTTCTTGGACATGTAAACGGCTCCTTGCTCGCCCATGGTAATGATCA
CGCTCTTGGCTCCCTTTGCGATAAGAGTTTCAGCTGCTTTTCGCGCCTGA
TCAGGG
BO17111.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17010-PA | 1290 | CG17010-RA | 600..1287 | 706..19 | 3440 | 100 | Minus |
CG17010-PB | 753 | CG17010-RB | 373..750 | 396..19 | 1890 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:14:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17010-RA | 1413 | CG17010-RA | 696..1383 | 706..19 | 3440 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:14:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12357189..12357876 | 706..19 | 3440 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:14:12 has no hits.
BO17111.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:02:38 Download gff for
BO17111.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17010-PA | 600..1290 | 15..706 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:27:00 Download gff for
BO17111.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17010-RA | 696..1390 | 10..706 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:47:46 Download gff for
BO17111.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17010-RA | 696..1390 | 10..706 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:47:46 Download gff for
BO17111.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12357189..12357883 | 10..706 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:27:00 Download gff for
BO17111.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12357189..12357883 | 10..706 | 99 | | Minus |
BO17111.5prime Sequence
653 bp (639 high quality bases) assembled on 2006-10-13
> BO17111.5prime
GAAGTTATCAGTCGACATGGGAAAGAAGCTGGATGTGGTTGTCTTCGGGA
CGGCAAACATCGAATATATAACATATGTCCCGGAATTGCCGAAACCCGGT
GAACTTGTCGCCGGAACGTACATGGAGACCTGTTTCGGTGGCAAGGGAGC
CAATCAGTGTGTGGCAGCTGCCAAATTGGGGGCCTCCACCGTCCTGGTCG
CCAAGTTGGGCAAGGACGAATCGGGCGATGACTACCTAAACCACCTGCAA
CAGCACGAGGTTGATGTGACGCACGTCCAGCAGGTGGAGAACAATCCCAC
GGGCATGAGTGAAATCGCGGTTTCTGAGAATGGAGATCAGTACAAGATCA
ACGTGGCTGGTGCGAATGTATTTCTCACGGCCAAGGATGTGACCCGGGCT
AAGAAGTCCTTTCAGGATGCGAAGGTGCTTCTCTGCCAACTGGAAACGGA
TATGAATGCCACCATGTGTGCGTTGCGTCAGTTCAAGGGGGTTTCCCTGC
TCCACATGTCGCCAATGCGAAAAGATATTCCAAATGCCATGATTGGCTTG
CCTACTATTCTGGTTGCGAATCAAGAGGCAGCTGCCAACCTAACCGATAT
GGAAGAAGTGTTAACCCCTGATCAGGCGCGAAAAGCAGCTGAAACTCTTA
TCG
BO17111.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17010-PA | 1290 | CG17010-RA | 1..637 | 17..653 | 3185 | 100 | Plus |
CG17010-PB | 753 | CG17010-RB | 1..373 | 17..389 | 1865 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:00:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17010-RA | 1413 | CG17010-RA | 97..733 | 17..653 | 3185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:00:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12356646..12357226 | 73..653 | 2905 | 100 | Plus |
2L | 23513712 | 2L | 12356537..12356592 | 17..72 | 280 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:00:24 has no hits.
BO17111.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:02:39 Download gff for
BO17111.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17010-PA | 1..637 | 17..653 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:33:32 Download gff for
BO17111.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17010-RA | 93..733 | 12..653 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:00:07 Download gff for
BO17111.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17010-RA | 93..733 | 12..653 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:00:07 Download gff for
BO17111.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12356533..12356592 | 12..72 | 96 | -> | Plus |
2L | 12356646..12357226 | 73..653 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:33:32 Download gff for
BO17111.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12356533..12356592 | 12..72 | 96 | -> | Plus |
arm_2L | 12356646..12357226 | 73..653 | 100 | | Plus |
BO17111.complete Sequence
1321 bp assembled on 2006-10-11
GenBank Submission: FJ634029
> BO17111.complete
GAAGTTATCAGTCGACATGGGAAAGAAGCTGGATGTGGTTGTCTTCGGGA
CGGCAAACATCGAATATATAACATATGTCCCGGAATTGCCGAAACCCGGT
GAACTTGTCGCCGGAACGTACATGGAGACCTGTTTCGGTGGCAAGGGAGC
CAATCAGTGTGTGGCAGCTGCCAAATTGGGGGCCTCCACCGTCCTGGTCG
CCAAGTTGGGCAAGGACGAATCGGGCGATGACTACCTAAACCACCTGCAA
CAGCACGAGGTTGATGTGACGCACGTCCAGCAGGTGGAGAACAATCCCAC
GGGCATGAGTGAAATCGCGGTTTCTGAGAATGGAGATCAGTACAAGATCA
ACGTGGCTGGTGCGAATGTATTTCTCACGGCCAAGGATGTGACCCGGGCT
AAGAAGTCCTTTCAGGATGCGAAGGTGCTTCTCTGCCAACTGGAAACGGA
TATGAATGCCACCATGTGTGCGTTGCGTCAGTTCAAGGGGGTTTCCCTGC
TCCACATGTCGCCAATGCGAAAAGATATTCCAAATGCCATGATTGGCTTG
CCTACTATTCTGGTTGCGAATCAAGAGGCAGCTGCCAACCTAACCGATAT
GGAAGAAGTGTTAACCCCTGATCAGGCGCGAAAAGCAGCTGAAACTCTTA
TCGCAAAGGGAGCCAAGAGCGTGATCATTACCATGGGCGAGCAAGGAGCC
GTTTACATGTCCAAGAAGAGCAAAGATATGTGCACCCATGTGCCCGCCTC
CGATGTGCCGCACTTGGCCGATCCCTCGGGTGCCGGTGATGCCTTTATGG
GCAGCTTGGCCTATCACATAGCTCGATTTCCCAAACTGTCCACAGAACAT
CATATCAGTGCGGCACACTCCTGCGCCGCCTACTCCATGGGCCGCCGCGG
CACTCAGCCAAGTTTTCCGGGCAAGGAAAGCGCCAAAAGTGACCTATGCT
ATTCGACGCCCACGTTTAGTGTCATTCCACCTTCTAGTCCGCAACATGAA
GATGATAATATGGTAACAAAGACGCCACCGCCTTCAATGGTAGTCCCTAC
GCCCGAAGAAGCACACTCCCAAAAGGAAGTTGTGGAAGAACCGCAAAAAC
CTGCACCTCCTCCACCGGAGGATCCGGTTGTGGAAGCACCTCCACCAACG
ACCTCCGAGGAACCTCCGAAAGCAGTGGAAACCTCCAATGAACCTCCAAA
GCCTGCGGAGACCACTGATGAACCTCCAAAGCCTGCGGAGACCGCAGATC
AAGCTCCTGTGAAACCCGTGGAGACTGCTAATGAGCCACCTGCCAACAAA
GCAGCAAGCTTTCTAGACCAT
BO17111.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:03:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17010-RA | 1290 | CG17010-PA | 1..1287 | 17..1303 | 6435 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:03:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17010-RA | 1413 | CG17010-RA | 97..1383 | 17..1303 | 6435 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:03:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12356646..12357876 | 73..1303 | 6155 | 100 | Plus |
2L | 23513712 | 2L | 12356537..12356592 | 17..72 | 280 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:03:32 has no hits.
BO17111.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:25:03 Download gff for
BO17111.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17010-RA | 1..1290 | 17..1307 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:45:28 Download gff for
BO17111.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17010-RA | 93..1390 | 12..1312 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:34 Download gff for
BO17111.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17010-RA | 97..1383 | 17..1305 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:25:03 Download gff for
BO17111.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17010-RA | 93..1390 | 12..1312 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:09:22 Download gff for
BO17111.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17010-RA | 97..1383 | 17..1305 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:09:22 Download gff for
BO17111.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12356537..12356592 | 17..72 | 100 | -> | Plus |
2L | 12356646..12357876 | 73..1305 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:34 Download gff for
BO17111.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12356537..12356592 | 17..72 | 100 | -> | Plus |
arm_2L | 12356646..12357876 | 73..1305 | 99 | | Plus |
BO17111.pep Sequence
Translation from 16 to 1321
> BO17111.pep
MGKKLDVVVFGTANIEYITYVPELPKPGELVAGTYMETCFGGKGANQCVA
AAKLGASTVLVAKLGKDESGDDYLNHLQQHEVDVTHVQQVENNPTGMSEI
AVSENGDQYKINVAGANVFLTAKDVTRAKKSFQDAKVLLCQLETDMNATM
CALRQFKGVSLLHMSPMRKDIPNAMIGLPTILVANQEAAANLTDMEEVLT
PDQARKAAETLIAKGAKSVIITMGEQGAVYMSKKSKDMCTHVPASDVPHL
ADPSGAGDAFMGSLAYHIARFPKLSTEHHISAAHSCAAYSMGRRGTQPSF
PGKESAKSDLCYSTPTFSVIPPSSPQHEDDNMVTKTPPPSMVVPTPEEAH
SQKEVVEEPQKPAPPPPEDPVVEAPPPTTSEEPPKAVETSNEPPKPAETT
DEPPKPAETADQAPVKPVETANEPPANKAASFLDH
BO17111.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:01:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17010-PA | 429 | CG17010-PA | 1..429 | 1..429 | 2239 | 100 | Plus |
CG13369-PA | 304 | CG13369-PA | 5..302 | 6..301 | 685 | 48 | Plus |